Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1453 152 1e-34 seq99 150 5e-34 seq4226 131 4e-28 seq43 131 4e-28 seq23 118 3e-24 seq9062 113 1e-22 seq150 102 2e-19 seq898 96.9 9e-18 seq5055 87.8 5e-15 seq1011 86.0 2e-14 seq79 82.4 2e-13 >seq1453 Length=184460 Score = 152 bits (168), Expect = 1e-34 Identities = 285/412 (69%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| || |||||| ||||||||||||| ||||| || ||| ||| Sbjct 179324 TATCTGAGGAATAAGCATCGACTAACTCTGTGCCAGCAGCCGTGGTAAGACAAAGGATGC 179383 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| || ||| | ||||| ||||| || | ||| || | | |||| | || Sbjct 179384 AAGCGTTATCCGAAATGATTGGGCATAAAGTGTCTGTAGGTGGCTTTTTAAGTCCATCGT 179443 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGC-ACGA--CTAGAGTGTGTC 179 ||||| | |||| |||| | | | | |||| | || | || || | || Sbjct 179444 CAAATCTCAAGGCTCAACCCTGAACAGG---TGGTGAAAACTACCAAGCTGGAATATGGT 179500 Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAA 239 || ||| | |||| | || ||| ||||||| |||||| || | | ||||||||| Sbjct 179501 AG-GGGCAGAAAAATTTTAA-TGGAGCGGTGAAATACGTAGAGATCGGAAAGAACACCAA 179558 Query 240 TGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299 | |||| ||| | || || |||||||| || | |||||||| || ||||||| Sbjct 179559 CGACGAAAGCACTCTACTAGGCCGACACTGACACTGAGAGACGAAAGCTAGGAGAGCAAA 179618 Query 300 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTT 359 ||||||||||||| ||||||| ||| |||||||| ||||| || || | | | Sbjct 179619 TGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGCGTAT 179678 Query 360 ACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| || |||||||| ||| Sbjct 179679 CGACCCATGCAGTGCTGTAGCTAACGCGTTAAGTATCCCACCTGGGGAGTAC 179730 >seq99 Length=1347885 Score = 150 bits (166), Expect = 5e-34 Identities = 220/307 (72%), Gaps = 3/307 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 298484 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 298543 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 298544 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 298603 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | | | Sbjct 298604 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTAG-AACTACCAAGCTGGAGTACGATA-A 298661 Query 183 GGGGGGTG-GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| | | |||| ||| ||| ||||||||| |||| || | | ||||||||| | Sbjct 298662 GGGCAGAGAAAATTTTCGGTGGAGCGGTGAAATGCATAGAGATCGGAAAGAACACCAACG 298721 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||| ||| | ||||| |||||||| || | ||||||| || ||||||| Sbjct 298722 ACGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGTTAGGAGAGCAAATG 298781 Query 302 GGATTAG 308 ||||||| Sbjct 298782 GGATTAG 298788 >seq4226 Length=45139 Score = 131 bits (144), Expect = 4e-28 Identities = 232/336 (69%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| |||||| | ||||||||| ||||||| |||| | ||| || ||| ||| Sbjct 32876 TATCTGAGAAATAAGTATCGGCTAACTCTGTGCCAGTAGCCACAATAAGACAGAGGATGC 32935 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||| ||| | ||||| | ||||||||||| | | ||| || | | ||| | | Sbjct 32936 AAGCATTATTTGGAATGATTGGGCGTAAAGTATCTGTAGGTGGCTTTTCAAGTCCATCAT 32995 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| |||| |||| || | | | ||| | || |||| | || Sbjct 32996 CAAATCCCAAGGCTCAACCCTAGACAGACGGTGGAAACTACCAAGCTGGAGTACGGTAG- 33054 Query 183 GGGGGGTGGAATTCCACG-TGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| | | || | || || ||| ||||||||| |||| || | | ||||||||| | Sbjct 33055 GGGCAGAGAAAATTTTCGATGGAGCGGTGAAATGCATAGAGATCGGAAAGAACACCAACG 33114 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||| ||| | ||||| ||||||||| || | | |||||| |||||||||| Sbjct 33115 ACGAAAGCACTCTACTGGGCCAACACTGACACTGAGAGAAGAAAGCTAGGGGAGCAAATG 33174 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||| ||||||| ||| |||||||| Sbjct 33175 GGATTAGATACCCCAGTAGTCCTAGCCATAAACGAT 33210 >seq43 Length=1757131 Score = 131 bits (144), Expect = 4e-28 Identities = 227/324 (70%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 16 AGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGG 75 ||| |||||||||| ||||| ||||| || |||| ||| ||| ||||| ||| |||| Sbjct 489554 AGCCCCGGCTAACTCCGTGCTAGCAGATGCAGTAAGACGGGGGG-GCAAGTGTTCTTCGG 489612 Query 76 AATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT-GTGAAATCCCCGGG 134 ||| | || ||||||| | || || |||| | | | | | |||||| | Sbjct 489613 AATAATAGGACGTAAAGGGCACGTAGTCGGT-GAATCGGGCTGAAAGTGAAAGTTGC--- 489668 Query 135 CTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAA 193 | || |||| | | ||| | | || ||| ||| | | |||||| | ||||| Sbjct 489669 CAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGCGAGACAGAGGAGAGTGGAG 489728 Query 194 TTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCC 253 || | |||||| ||||||| |||||||| | |||||| |||| || |||||||| Sbjct 489729 TTTCGTGTGTAGGGGTGAAATCTGTAGATATACGAAGGAACGCCAAAAGCAAAGGCAGCT 489788 Query 254 CCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACC 313 | ||||| | || ||| | ||||||| |||||||| || ||||||||||||| Sbjct 489789 CTCTGGGTCCCTAGCGATGCTGTGGTGCGAAAGCATGGGGAGCGAATAGGATTAGATACC 489848 Query 314 CTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||| ||| |||||||| Sbjct 489849 CTGGTAGTCCATGCCGTAAACGAT 489872 >seq23 Length=2323044 Score = 118 bits (130), Expect = 3e-24 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 922349 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 922408 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| |||||||||| |||||||| Sbjct 922409 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGA 922468 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| ||| |||||||| Sbjct 922469 TACCCCAGTAGTCCTAGCCGTAAACGAT 922496 >seq9062 Length=14617 Score = 113 bits (124), Expect = 1e-22 Identities = 228/336 (68%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 2 ATACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTG 61 ||| |||| ||||||||| | ||||||| |||| || ||||| ||||| || ||| | Sbjct 10590 ATATCTGAGGAATAAGCATCAGCTAACTCTGTGCTAGTAGCCGTGGTAAGACAAAGGATA 10531 Query 62 CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTG 121 ||| ||||| | |||| | |||| ||||||| | | ||| || | | | | | | | Sbjct 10530 CAAACGTTATCCAGAATGATTGGGTGTAAAGCATTTGTAGGTGGCTTTTCAGGTCCGCCG 10471 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 | ||||| | ||||| ||||| ||| | | | ||| | || |||| | || Sbjct 10470 TCAAATCTCAGGGCTCAACCTTGGACAGATAGTGGAAACTACTAAGCTGGAGTACGGTAG 10411 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || | | || | | ||| ||||||||| |||| || || ||||||||| Sbjct 10410 -GGACAGAGAAAATTTTGATAGAGCGGTGAAATGCATAGAGATCAAAAG-AACACCAATA 10353 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 | ||| ||| | ||||| ||||||| || || | || ||||| || ||||||| Sbjct 10352 GTGAAAGCACTCTACTGGGCTAACACTAACACTGAGAGACAAAAGCTAGGAGAGCAAATG 10293 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||| ||||||| | | ||||||| Sbjct 10292 GGATTAGATACCCCAGTAGTCCTAGTCGCAAACGAT 10257 >seq150 Length=1123864 Score = 102 bits (112), Expect = 2e-19 Identities = 274/412 (67%), Gaps = 24/412 (6%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||| | |||||||||||||| ||| || ||| ||| Sbjct 416633 TATCTGAGGAATAAGCATCGGCTAATTCTGTGCCAGCAGCCGCAATAAGACAGAGGATGC 416574 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 || ||||| | |||| | ||| |||||||| | | ||| | | | ||| | | || Sbjct 416573 AAACGTTATCCAGAATGATTGGACGTAAAGCATCTGTAGGTGACTTTTCAAGTCCGCCGT 416514 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||| | | || || | | | || | || |||| | || Sbjct 416513 CAAATCCTAGAGA-------GGCGATAGAACTAT------CAAG-CTGGAGTACGATAG- 416469 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 | | |||||| | || |||||||||||| |||| || | | |||||||| || Sbjct 416468 GAGCACAGGAATTTCGA-TGGAGCAGTGAAATGTATAGAGATCAGAAAAAACACCAACGG 416410 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| |||| |||||||| || | |||||||| |||||||||| Sbjct 416409 CGAAAGCACTTTGCTGGACCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGA 416350 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTA---GTTGTTGGGGATTT 359 |||||||||||| |||||| | | |||||||| |||| | || || | || Sbjct 416349 GATTAGATACCCCAATAGTCCTAGTCGTAAACGATGGATACTAAGCGCTG-TGCGTATCG 416291 Query 360 ACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 416290 AC--CCGTGCAGTGCTGTAGCTAACGCGTTAAGTATTCCGCCTGGGGAGTAC 416241 >seq898 Length=358302 Score = 96.9 bits (106), Expect = 9e-18 Identities = 106/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 6 CTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAG 65 |||| |||||| || ||||||||| | |||||| ||||||||||| || ||| |||||| Sbjct 341342 CTGAGGAATAAACATCGGCTAACTCCATGCCAGTAGCCGCGGTAAGACAGAGGATGCAAG 341401 Query 66 CGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAA 125 | ||| ||||| | ||||| |||||| | | ||| || | | ||| | | || || Sbjct 341402 CATTATCTGGAATGATTGGGCATAAAGCATCTGTAGGTGGCTTTTCAAGTCTGCCGTCAA 341461 Query 126 ATCCCCGGGCTTAA-CCTGG 144 ||||| ||||| || ||||| Sbjct 341462 ATCCCAGGGCTCAATCCTGG 341481 Score = 91.5 bits (100), Expect = 4e-16 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 6 CTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAG 65 |||| |||||| || ||||||||| | |||||| |||| |||||| || ||| |||||| Sbjct 341109 CTGAGGAATAAACATCGGCTAACTCCATGCCAGTAGCCACGGTAAGACAGAGGATGCAAG 341168 Query 66 CGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAA 125 ||||| ||||| | ||||| |||||| | | ||| || | | ||| | | | || Sbjct 341169 CGTTATCTGGAATGATTGGGCATAAAGCATCTGTAGGTGGCTTTTCAAGTCCGCCATCAA 341228 Query 126 ATCCCCGGGCTTAA-CCTGG 144 ||||| ||||| || ||||| Sbjct 341229 ATCCCAGGGCTCAATCCTGG 341248 >seq5055 Length=71670 Score = 87.8 bits (96), Expect = 5e-15 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| |||| || ||||||||||| | ||| ||| Sbjct 52640 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCTAGTAGCCGCGGTAAGATAGAGGATGC 52581 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGC 93 |||||||| |||||| | ||||| |||||| Sbjct 52580 AAGCGTTATCCGGAATGATTGGGCATAAAGC 52550 >seq1011 Length=254932 Score = 86.0 bits (94), Expect = 2e-14 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 211 AAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGA 270 |||| | ||||| | |||||| |||| | ||||| ||| | ||||| ||||| Sbjct 125785 AAATCCATAGATCTACAAAGGAACGCCAAAAGTGAAGGGAGCTCTCTGGGTCCCTACTGA 125726 Query 271 CGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCT 330 ||| | ||||||| |||||||| |||||||||||||||||| |||||||| | | | Sbjct 125725 TGCTTGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTAGTAGTCCATGTCGT 125666 Query 331 AAACGAT 337 ||| ||| Sbjct 125665 AAATGAT 125659 >seq79 Length=1584733 Score = 82.4 bits (90), Expect = 2e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||| ||||| || ||| ||| Sbjct 863263 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGTGGTAAGACAGAGGATGC 863204 Query 63 AAGCGTTAATCGGAA 77 |||||||| ||||| Sbjct 863203 AAGCGTTATCCGGAA 863189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289254954624