Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1100 149 9e-34 seq99 132 7e-29 seq1061 105 9e-21 seq5514 96.9 5e-18 seq8 80.6 4e-13 >seq1100 Length=222598 Score = 149 bits (164), Expect = 9e-34 Identities = 178/238 (75%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 87158 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 87100 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 87099 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 87042 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 87041 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 86991 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || |||| | ||| |||| |||||| |||||| || ||||||||||||||| Sbjct 86990 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTT 86933 >seq99 Length=1347885 Score = 132 bits (146), Expect = 7e-29 Identities = 178/244 (73%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||| ||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 1062681 CCTTCCAGCACCGAGCAGGTGTCAGACTTTATACATCGTGTTACCA-CTTAGCAGAGTCC 1062739 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||| ||||||| ||| | | ||| || | | |||| | Sbjct 1062740 GGTGTTTTTAATAAACAGTTGCTTCCCCCTAGTATGTGCTACTTTCCTAA--TCAAAAGA 1062797 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||| ||||||| ||| ||||||| ||| ||||| Sbjct 1062798 T--------AGGAGAG-CACCCCTTCTCCCAAAGTTACAGGGTCATTTTGTCGAGTTCCT 1062848 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| ||| |||||| |||||| || ||||||||||||||| Sbjct 1062849 TCGACATGGTTCTCTCGATGTGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 1062908 Query 245 GGTA 248 |||| Sbjct 1062909 GGTA 1062912 >seq1061 Length=256299 Score = 105 bits (116), Expect = 9e-21 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||| ||||||| ||||| |||||||||| || ||||| | |||| | Sbjct 239933 GGCACCCCTTCTCCTGAAGTTATGGGGCTATTTTGCCGAGTTTCTTAAAAAGAGTTATCT 239874 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||||||| |||||||||||| ||| |||| Sbjct 239873 CGCGCCCCTAAGTATTCTCTACCTATCCACCTGTGTCGATTTCGGGTA 239826 >seq5514 Length=30179 Score = 96.9 bits (106), Expect = 5e-18 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||| |||||||| ||||||| ||||| |||||||||| |||||||| | |||| | Sbjct 17140 GGCACTCCTTCTCCTGAAGTTATGGGGCTATTTTGCCGAGTTCCTTAAAAAGAGTTATCT 17199 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG-GTTT 242 || | || |||||||||||||| |||||||||||| |||| Sbjct 17200 CGCATCTCTAAGTATTCTCTACCTACCCACCTGTGTCGAGTTT 17242 >seq8 Length=3011817 Score = 80.6 bits (88), Expect = 4e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||| |||||||||||||| ||||| ||| ||||||| | |||| | Sbjct 2983690 GGCACCCCTTCTCTCGAAGTTACGGGGCTATTTTATCGAGTTCCTTAGAGAGAGTTGTCT 2983631 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 || | ||| |||||||||||| |||||||| Sbjct 2983630 CGCGCCCCTAGATATTCTCTACCTACCCACCTGT 2983597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694220012388