Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1100 237 4e-60 seq99 174 4e-41 seq594 127 5e-27 seq386 125 2e-26 seq3566 122 2e-25 seq1061 109 1e-21 seq5514 104 6e-20 seq105 102 2e-19 seq956 100 7e-19 seq3766 93.3 1e-16 seq132 86.0 2e-14 seq1215 78.8 2e-12 seq207 75.2 3e-11 >seq1100 Length=222598 Score = 237 bits (262), Expect = 4e-60 Identities = 300/413 (73%), Gaps = 22/413 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 87344 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 87285 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 87284 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 87225 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||| ||| | || Sbjct 87224 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 87171 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 87170 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 87111 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 87110 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 87051 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 87050 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 87006 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | |||||||| | ||||| | |||| |||||| Sbjct 87005 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTAC 86953 >seq99 Length=1347885 Score = 174 bits (192), Expect = 4e-41 Identities = 210/286 (73%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| |||||||||||| | || ||||||||||| ||| | ||||||||||| || Sbjct 1062495 TACTCTGCATCTTCACGGAGAATTCAATTTCACCAGGTCCATGTTGGAGACAGCGGGGCA 1062554 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 || || | |||||| ||||||||| ||| ||||||||||||||||| |||||||| Sbjct 1062555 GTCATTCCACCATTCATGCAGGTCGCTGGTTATGCGACAAGGAATTTCGCTCCCTTAGGA 1062614 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||| ||||||||| || | ||| ||| | || Sbjct 1062615 CAGTTAGAGTTACTGCCGCCGTTTATCGGGGCTTCCATTCAAAGC------TTATCACAC 1062668 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||| ||||| |||| || ||||| || || | | Sbjct 1062669 TTCTCCTTCCGACCTTCCAGCACCGAGCAGGTGTCAGACTTTATACATCGTGTTACCACT 1062728 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 | ||||||| | |||||||||||||||||| || | ||| |||| Sbjct 1062729 TAGCAGAGTCCGGTGTTTTTAATAAACAGTTGCTTCCCCCTAGTAT 1062774 >seq594 Length=596850 Score = 127 bits (140), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 5/148 (3%) Strand=Plus/Minus Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 || ||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||| | Sbjct 74038 CCTTTCGTGC-GGTCGGAACTTACCCAACAAG-AATTTCGCTACATTAGGACCGTTATAG 73981 Query 136 TTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT---TCGCGTTAGCTAACCCCATC 192 ||||||| |||||| |||||||||||| || ||| | | | || | ||| | Sbjct 73980 TTACGGCTGCCGTTCACCGGGGCTTCGGTCGTCGGCTCCCTGTCATCAGGTCACCAACTT 73921 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGT 220 || ||||||||||||||||||||||| Sbjct 73920 CCTTGACCTTCCGGCACCGGGCAGGCGT 73893 >seq386 Length=628416 Score = 125 bits (138), Expect = 2e-26 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||||||| ||| ||||||| || |||||| Sbjct 609859 GCATCTTCACAGACATGTCTATTTCACTGAGCCTCTCTCCGAGACAGTACCCAGATCGTT 609918 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | ||| |||||| ||||||||||||| ||| || ||||| |||| |||| ||||||| Sbjct 609919 ATGCCTTTCGTGTGGGTCGGAACTTACTCGATAAAAAATTTTGCTATCTTAAAACCGTTA 609978 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTC 161 | |||| ||||||||| | ||||||||| Sbjct 609979 TAATTACAGCCGCCGTTCATCGGGGCTTC 610007 >seq3566 Length=49936 Score = 122 bits (134), Expect = 2e-25 Identities = 121/154 (79%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 ||||||||||||| || || |||||| ||| || | ||||||| ||| ||||| Sbjct 9474 TGCATCTTCACAGACATGTCTATTTCATCGAGCTTCTCTTTGAGACAGTGCCCAGATCGT 9415 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 || || ||||||| ||||||| ||| |||||||||||| |||||||||||||||| Sbjct 9414 TATACCTTTCGTGC-GGTCGGA-CTT----GACAAGGAATTTTACTACCTTAGGACCGTT 9361 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 || ||||||||||| ||| | |||| ||||| || Sbjct 9360 ATAGTTACGGCCGCAGTTCATCGGGACTTCGGTC 9327 >seq1061 Length=256299 Score = 109 bits (120), Expect = 1e-21 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 5 GATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCG 64 |||| | ||||||||| || || | ||||||| | |||| | |||| || ||| Sbjct 240247 GATAGTCCGCATCTTCATAGACATGTTTATTTCACCAAATCTCTCTTCGAGATAGTGCCC 240188 Query 65 CCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 124 |||||||| || ||| | | ||| | ||||||| ||| ||| |||||| |||| |||| Sbjct 240187 AAATCGTTACACCTTTCATACGGGTTGAAACTTACTCGATAAGAAATTTCACTACTTTAG 240128 Query 125 GACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 ||||||||| |||||||||||| | || |||||||| Sbjct 240127 GACCGTTATAATTACGGCCGCCGCTCACTAGGGCTTCG 240090 >seq5514 Length=30179 Score = 104 bits (114), Expect = 6e-20 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||| || || || ||||||| | |||| | |||| || | | |||||| Sbjct 16832 GCATCTTCATAGACATGTCTATTTCACCAAATCTCTCTTTGAGATAGTGTCCAGATCGTT 16891 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || ||| | | ||| | ||||||| ||| ||| |||||| |||| ||| |||||||| Sbjct 16892 ACACCTTTCATACGGGTTGAAACTTACTCGATAAGAAATTTCACTACTTTAAGACCGTTA 16951 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 | ||||||||||| || || |||||||| Sbjct 16952 TAATTACGGCCGCCATTCACTAGGGCTTCG 16981 >seq105 Length=1283933 Score = 102 bits (112), Expect = 2e-19 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| || || |||||| ||| ||| |||| || ||| || | Sbjct 856188 CTGCATCTTCACAGATATGTCTATTTCATCGAGCCTCTCTCTGAGAAAGTGCCCAGATTG 856129 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||| ||| || || | || ||||||||| ||||||| ||||| |||||||||| |||| Sbjct 856128 TTATGCCTTTTGTATGGATCAGAACTTACCTGACAAGGGATTTCACTACCTTAGGGCCGT 856069 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTC 161 ||| |||| | || ||| |||||| |||| Sbjct 856068 TATGGTTATAGTTGCTGTTCACCGGGACTTC 856038 >seq956 Length=248699 Score = 100 bits (110), Expect = 7e-19 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| ||| || || ||||||| ||||||| | |||||| | || || Sbjct 186775 GCATCTTTACAAACATGTCTATTTCACCGAGTCTCTCTTCGAGACAATATCCAGATTATT 186716 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || ||||||| ||| | |||| | | || |||||||||||||||||||| ||||||| Sbjct 186715 ACTCCTTTCGTGCGGGTTGAAACTCATCTGATAAGGAATTTCGCTACCTTAGAACCGTTA 186656 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 | |||||| | || ||| | || |||||| || Sbjct 186655 TAGTTACGACTGCTGTTCGCTGGAGCTTCGGTC 186623 >seq3766 Length=56865 Score = 93.3 bits (102), Expect = 1e-16 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || |||| | ||| ||| | |||| || | |||||| Sbjct 42817 GCATCTTCACAGATATGTCTATTTTATCGAGCCTCTCTTCGAGATAGTATCTAGATCGTT 42758 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| | ||||| |||||||| | | ||| |||||| ||| |||| || ||||| Sbjct 42757 ACGCCTTTCATACAGGTTGGAACTTATCAAATAAGAAATTTCACTATCTTAAGATCGTTA 42698 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCA 166 | ||||| || | |||| || ||||||| ||| Sbjct 42697 TAGTTACAGCTGTCGTTCACTAAGGCTTCGGTCA 42664 >seq132 Length=1244686 Score = 86.0 bits (94), Expect = 2e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 86 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGC 145 || ||| |||||| |||| ||| ||||||||||||||||||||||||| ||||||| || Sbjct 700005 AGATCGAAACTTATCCGATAAGAAATTTCGCTACCTTAGGACCGTTATAGTTACGGTCGT 700064 Query 146 CGTTTACCGGGGCTTCGATC 165 | || |||||||| |||| Sbjct 700065 CATTCCTCGGGGCTTTGATC 700084 >seq1215 Length=218231 Score = 78.8 bits (86), Expect = 2e-12 Identities = 144/210 (69%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | || |||| ||| || ||| ||| || | | | || || Sbjct 142790 GCATCTTCACAGACAAGTCTATTTAACTAAGCCTCTCCA--AGATAGTGTCCCGATTATT 142847 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | ||| ||| || | || ||||||| ||||||| ||||| ||||||||||||| ||| Sbjct 142848 ATGCCTTTCATGTGGATCTGAACTTATCCGACAAAAAATTTTGCTACCTTAGGACTATTA 142907 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | |||| |||||| || | || | | ||||| | |||| | | | | ||| Sbjct 142908 TAGTTATGGCCGCAATTCATCGAGAAATTGATCACCAACTTCCTTGTCATCAAGTCACCA 142967 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGC 218 | ||| |||||| ||||| |||||||| Sbjct 142968 ACTTCATTGACCTTCTGGCACTGGGCAGGC 142997 >seq207 Length=956685 Score = 75.2 bits (82), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 ||||||| | || || ||||||||| |||| | |||||| || | || ||| |||| Sbjct 787404 ATCTTCATGGAGAATTTAATTTCACTAGGTCTATGTTGGAGATAGTGG-GCAATCATTAC 787346 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 |||||| || ||| | ||||| ||||||||||||| ||||||| ||| || Sbjct 787345 ACCATTCATGTGGGTTGCTACTTAGATGACAAGGAATTTCACTACCTT-GGA----TAGA 787291 Query 135 GTTACGGCCGCCGTTTACCGGGGCTT 160 ||||| | | || ||||| | ||||| Sbjct 787290 GTTACTGTCTCCATTTACTGAGGCTT 787265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260462660352