Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq783 185 1e-44 seq1357 138 2e-30 seq2348 93.3 7e-17 seq256 93.3 7e-17 seq2593 89.7 8e-16 seq131 87.8 3e-15 seq340 75.2 2e-11 >seq783 Length=351393 Score = 185 bits (204), Expect = 1e-44 Identities = 195/256 (76%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||| | || ||| |||||| ||||| ||||||||||||||| Sbjct 347605 ACTCGTTGAATACATCAGTGTAACACGTGTGTGGCCCAAAACATTTAAGGGCATCACAGA 347546 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||| |||||||||||||||||||| | || | | ||||| ||||||||||| || Sbjct 347545 CCTATTATTGCCTCAAACTTCCATGGTCTAAGTGGCCATAGTTCCTCTAAGAAGTTGGCT 347486 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | || |||| ||| |||| |||||||| ||| ||| |||||| Sbjct 347485 GTGGAGGGATGCCTCTGCATAGCTAGTTAACAGGCCAAGGTCTCATTCATTAATGGAATT 347426 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || || ||||||| || ||||||||| ||| |||||||||||||||||||||||| Sbjct 347425 AATCAAACAAATCGCTTCACCAACTAGGAATAAGCATGCACCACCACCCATAGAATCATA 347366 Query 240 AAAGAGCTATCAATCT 255 |||||||| ||||||| Sbjct 347365 AAAGAGCTCTCAATCT 347350 >seq1357 Length=220353 Score = 138 bits (152), Expect = 2e-30 Identities = 102/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||||| ||||||| || |||| ||||||| |||||||| |||||||| Sbjct 167414 GCTAGTTAGCAGGTTGAGGTCTCATTTGTTAATAAAATTAACTAGACAAATGACTCCACC 167355 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||||||| |||||| |||||||||||||| ||||||| || Sbjct 167354 AACTAAGAACGGCTGTGCACCACCATCCATAG-ATCAAGAAAGAGCTCTCAATCTATC 167298 >seq2348 Length=93415 Score = 93.3 bits (102), Expect = 7e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||||| Sbjct 80158 CAGTGTAGCGCGCATGCGGCCTAAAACATCTAAGGGCATCACAGACCAGTTATTGCCTCA 80099 Query 77 A 77 | Sbjct 80098 A 80098 >seq256 Length=873884 Score = 93.3 bits (102), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||| | |||||| ||||||||||||||||||||| || ||||| | || Sbjct 551108 TCAGTGTAGCGCACAAGCGGCCTAGAACATCTAAGGGCATCACAAACTTGTTACTATCTT 551167 Query 76 AAACTTCCATTGGCT-GGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 |||||| | || | || | ||||| |||| | |||| ||||| || | | Sbjct 551168 AAACTTTTGTGACCTAAGCAGTC-ATAGTATCTCTCAAAAGCTAGCCATGAAGAGATGCC 551226 Query 135 GATG--GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 ||| |||| ||||||| | | |||| || ||| |||||| ||||||||| Sbjct 551227 TATGTATAGCTAGTTAGCAGACTGATGTCTTCTTTTTTAATAAAATTAATCAGACAAATT 551286 Query 193 ACTCCACCAACTAAGAACGGCCATGCACC 221 ||| |||||| |||||| ||| |||| Sbjct 551287 ACTTTACCAACAAAGAACAAACATACACC 551315 >seq2593 Length=130948 Score = 89.7 bits (98), Expect = 8e-16 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||| Sbjct 97006 TCAGTGTAGCGCGCATGCGGCTTAAAACATCTAAGGGCATCACAGACCAGTTATTGCCTC 96947 Query 76 AA 77 || Sbjct 96946 AA 96945 >seq131 Length=1199329 Score = 87.8 bits (96), Expect = 3e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||| ||||| |||| | ||| |||| |||||||||| ||| ||||||||||||||||||| Sbjct 693534 TAGTAGGTTGAGGTTTTGTTAGTTAACGGAATTAACTAGATAAATCACTCCACCAACTAA 693475 Query 207 GAACGGCCATGCACCA 222 ||| |||||||||| Sbjct 693474 GAATAACCATGCACCA 693459 >seq340 Length=705485 Score = 75.2 bits (82), Expect = 2e-11 Identities = 79/104 (76%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||| ||| | |||||| || | | ||||||||||||| ||| ||||||| |||||| Sbjct 286622 TAGTAGGATGAGGTCTTATTTATCAATGGAATTAACCAGATAAAGTACTCCACTAACTAA 286563 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || || ||| |||| | |||||||||||| ||||| || || Sbjct 286562 TAATGGTTTTGCGCCACTATCCATAGAATCAAAAAAGAACTCTC 286519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796593470436