Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq43 250 4e-64 seq81 203 6e-50 seq340 183 5e-44 >seq43 Length=1757131 Score = 250 bits (276), Expect = 4e-64 Identities = 233/294 (79%), Gaps = 9/294 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||| |||| ||| | || |||||||||||||||||||| ||||||| Sbjct 1683074 TACTAGGTTGAATTAATATTGCGGC-ATGGCTATCAGTAGGGTAAAACTAACTTGTCTCA 1683132 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || | |||||||||||||||| ||||| | |||||| ||||||| ||| || Sbjct 1683133 AGATGATCTAAACCCAGCTCACATTCCCGA-------GTGAACCATCCAACACTTGGTGA 1683185 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 | | |||||| || |||||||||||| |||||||| ||||||||||||| ||| |||| Sbjct 1683186 AATTTGCTTCACAATAATAGGAAGAGCCAACATCGAAAGATCAAAAAGCAATGTCACTAT 1683245 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| ||||||||||| |||||||||||| | || ||||| ||| || |||||||||| | Sbjct 1683246 GAATGCTTGGCTGCCGCAAGCCAGTTATTCTTGCAGTAACCTTTTTGACACCTCTAGCTT 1683305 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | || | ||| | ||| |||||| ||||| || ||||||| ||| ||||||| Sbjct 1683306 C-AACTCCGAAGATCTATAGGATCCATAGGTCATGCTTTCATAGTTCGTATTCA 1683358 Score = 168 bits (186), Expect = 1e-39 Identities = 181/235 (77%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 |||||| ||||| |||| ||||||| | | |||||||| ||||||| || |||||||| Sbjct 1732129 AGTAGG-TAAAATTAACTTGTCTCACAATGATCTAAACCTAGCTCACAGTCTCTATTAGT 1732187 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG---AGCCGACA 152 |||| |||||| | || ||| ||||||||||| |||||| |||| |||||||| Sbjct 1732188 GGGTAAACAATGCCACACTTGGTAAATTCTGCTTCACAATGATAAGAAGATCAGCCGACA 1732247 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 || | |||||||||||||||| | | |||| ||||||||| | ||| ||| |||||| | Sbjct 1732248 TCAAGGGATCAAAAAGCAACGACAC-CTGAATGCTTGGCTGTCGCAAACCAATTATCCTT 1732306 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGAT 267 | ||| |||| || |||| ||||| || | | ||| || ||||||| || || Sbjct 1732307 GCAGTAGGTTTTGTGACACCCCTAGCTTC--ACTACGAAGGTCTAAAGGGTCAAT 1732359 >seq81 Length=1427834 Score = 203 bits (224), Expect = 6e-50 Identities = 206/266 (77%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 29 GGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 || ||| || || |||||||||| |||||||||| ||||||| |||||||| || | Sbjct 612669 GGCCATTAGCAGAATAAAACTAACTTGTCTCATGATTATCTAAACTCAGCTCACATTTTC 612728 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 | || |||| ||||||||||||| || ||||| ||||| || |||||||||||| Sbjct 612729 TTTTGGTGG-TGAACAATCCAACACTCGGTGAATTTTGCTTTATAATAATAGGAAGAGCC 612787 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 |||| ||||||| |||| |||| ||| | || | ||||||||||||||||||| |||| Sbjct 612788 AACATTGAAGGATAAAAAGGCAATGTCATTGTGTATGCTTGGCTGCCACAAGCCAATTAT 612847 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 | ||| ||||||||| || | ||||| | || || | ||| || ||| |||||| ||| Sbjct 612848 ACTTGTAGTAACTTTTTTGACTCCTCTTG-CTGCAACTCCGAAGGTCTACAGGATCAATA 612906 Query 269 GGCCACACTTTCATGGTTTGTATTCA 294 ||||| |||||| || ||||||| Sbjct 612907 GGCCATGTTTTCATAATTCGTATTCA 612932 >seq340 Length=705485 Score = 183 bits (202), Expect = 5e-44 Identities = 187/242 (77%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||| |||||||||| ||| | | | | || |||||||||| |||| | ||| ||||| Sbjct 260721 CATCAATAGGGTAAAATTAA--TATTTAACGATGGTCTAAACCTAGCTTATGTTACCTAT 260664 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | |||||| |||||| || || | ||||||||||| | ||||||||||||||| || Sbjct 260663 TCGTGGGTAGACAATCTAATACTCAATGAATTCTGCTTTGCAATGATAGGAAGAGCCAAC 260604 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | | |||||| ||||||||| | |||||||| ||||||||||||| ||||||||| || Sbjct 260603 AAAGGAGGATC-AAAAGCAACATTGCTATGAATGCTTGGCTGCCACGAGCCAGTTAGCCT 260545 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 | ||||||||||| ||| | | | |||||| | | || || || |||||| | || Sbjct 260544 TATGGTAACTTTTTCAACACTTTAAACTTCAAATCCCAAAGGTCTCAAAGATCGACAAGC 260485 Query 272 CA 273 || Sbjct 260484 CA 260483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854171396736