Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq37 143 5e-32 seq3566 132 9e-29 seq71 125 1e-26 seq1100 104 5e-20 seq65 98.7 2e-18 seq451 93.3 8e-17 seq10 91.5 3e-16 >seq37 Length=1900563 Score = 143 bits (158), Expect = 5e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | ||||| ||| ||| |||||||||| ||||||||||| Sbjct 366439 GGGACAGTCTCAGGTAGATAGTTTCTATGGAGCGTAGGCCTCCCAAAAGGTAACGGAGGC 366380 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||||| | || | ||| ||| | || | | |||||||||||| ||||| Sbjct 366379 GTGCAAAGATTCTTCGAG-TCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 366322 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||| | | ||| | ||| |||||||||||||||||| |||| ||||||| || Sbjct 366321 GCTTGACTACAAGACCTACC-GTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGA 366263 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || || ||||| ||||||||||| | ||||||||| ||| || |||||| Sbjct 366262 TGTCGAGTGGAAGGGCCGTCGCTCAATGGATAAAAGTTACTCTAGGGATA 366213 >seq3566 Length=49936 Score = 132 bits (146), Expect = 9e-29 Identities = 173/233 (74%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 109 ACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAG 168 |||||||| | |||| | || ||| ||||||| |||||||||||| |||| ||| Sbjct 9656 ACGGGACAATCTCAGATAGACAATTTCTATGGGGCGTAGGCCTCCCAAAGA-TAACAGAG 9714 Query 169 GCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATG-CGCAC-AGTGCAAAGGCAAAAG 226 || ||||||| ||||| | ||||||| | || | | | |||||||||||||||| Sbjct 9715 GCATGCAAAGATTTTCTCAGATCGGATGGAGAT--TGACCCTCGAGTGCAAAGGCAAAAG 9772 Query 227 GGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGG 286 | | |||||||| | ||| ||| || || ||||||||| || |||| ||||||| Sbjct 9773 GAAGCTTGACTGCAAAACCGCCAA-TCGAGTGAAGACGAAAGTTGGCCTTAGTGATCCGA 9831 Query 287 CGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || | ||| |||| |||||| || |||||||| ||| || ||||| Sbjct 9832 CGGTGTCGAGTAGAAGGGCCATCGCTCAACAGATAAAAGTTACTCTAAGGATA 9884 >seq71 Length=1438040 Score = 125 bits (138), Expect = 1e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||| | |||||||||| | |||| ||| |||||||||||||||| Sbjct 489411 AGTGCAAAGGCAGAAGAGAGTTTGACTGCAAGACCCATCCGTCGAGCAGGGACGAAAGTC 489470 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| ||||||| |||| || ||||| ||||||||||| | ||||||||| || Sbjct 489471 GGCCTTAGTGATCCGATGGTGTCGAGTGGAAGGGCCGTCGCTCAATGGATAAAAGTTATT 489530 Query 331 CTGGGGATA 339 || |||||| Sbjct 489531 CTAGGGATA 489539 >seq1100 Length=222598 Score = 104 bits (114), Expect = 5e-20 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| | Sbjct 87513 GGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTG 87572 Query 172 CCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||| || |||| || | ||| | || || | || || | ||| || Sbjct 87573 TGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCCTG 87627 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| || Sbjct 87628 CCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGT 87687 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 87688 CCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 87736 >seq65 Length=1810282 Score = 98.7 bits (108), Expect = 2e-18 Identities = 127/169 (75%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 174 CAAAGATACCCTCAGCTTGGATGGAAACCATG-CGCAC-AGTGCAAAGGCAAAAGGGTGT 231 ||||| | | |||| | ||||||||| || | | | |||||||| | | ||||| | Sbjct 86400 CAAAGGTTTCTTCAGATCGGATGGAAAT--TGACTCTCGAGTGCAAAAGTAGAAGGGAGC 86457 Query 232 TTGACTGCGACACCC-TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | |||| || | || ||||| |||||||||||| |||| |||||| |||| Sbjct 86458 TTGACTGCAAAACCCATCCA-TCGAGCAGAGACGAAAGTCGGCCTTAGCGATCCGACGGT 86516 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || || ||||| | | ||||||| | |||||||| || | |||||| Sbjct 86517 GCCGAGTGGAAGGACTGTCGCTCAATAGATAAAAGTGACTCGAGGGATA 86565 >seq451 Length=626033 Score = 93.3 bits (102), Expect = 8e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| | ||||| |||| |||| | ||| | | ||| || | | || Sbjct 379454 GCCTCCCAAA-ACTAACGAAGGCATACAAAAGTTTCCTTGGGTCGGACAGAGATTA-GCC 379397 Query 208 CAC-AGTGCAAA-GGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265 | | |||||||| |||| ||||| ||||||||| | |||| | || || ||||| | Sbjct 379396 CTCGAGTGCAAAAGGCAGAAGGGAGTTTGACTGTAAGACCCACCCATCGAGTAGGGATAA 379337 Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 ||||||| |||| |||||| | ||| || ||||| |||| ||||| ||||||||||| Sbjct 379336 AAGTCGGCCTTAGTGATCCCATGATGCCGAGTGGAAGGGCCATCGCTTAACGGATAAAAG 379277 Query 326 CTACCCTGGGGATA 339 | | | |||||| Sbjct 379276 TTCCTTTAGGGATA 379263 >seq10 Length=3029378 Score = 91.5 bits (100), Expect = 3e-16 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 213 TGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGG 272 |||||||||| |||| | |||||||| | ||| | | || ||||| || |||||| || Sbjct 1679035 TGCAAAGGCAGAAGGA-GCTTGACTGCAAGACCACCCA-TCGAGCAGAGATGAAAGTTGG 1678978 Query 273 GCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCT 332 |||||||||||| | |||| || ||||| | || |||||| | |||| |||| || || Sbjct 1678977 CCTTAATGATCCGACAGTGCCGAGTGGAAGGACCATCGCTCAATGGATCAAAGTGACTCT 1678918 Query 333 GGGGATA 339 |||||| Sbjct 1678917 AGGGATA 1678911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982137149056