Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1100 107 2e-21 seq99 78.8 1e-12 seq594 75.2 1e-11 >seq1100 Length=222598 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 87369 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 87310 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 87309 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 87250 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 87249 GACAAGGAATTTCGCTACCTTAGGACAGTTA 87219 >seq99 Length=1347885 Score = 78.8 bits (86), Expect = 1e-12 Identities = 91/127 (72%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 47 GTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNN 106 ||| || |||||||||| || | | ||||||||| | || | | ||||||| Sbjct 1062494 GTACTCTGCATCTTCACGGAGAATTCAATTTCACCAGGTCCATGTTGGAGACAGCGGGGC 1062553 Query 107 NNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 166 | |||||||| ||||||||| ||| ||||||||||||||||| ||||||| Sbjct 1062554 AGTCATTCCACCATTCATGCAGGTCGCTGGTTATGCGACAAGGAATTTCGCTCCCTTAGG 1062613 Query 167 ACCGTTA 173 || |||| Sbjct 1062614 ACAGTTA 1062620 >seq594 Length=596850 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 116 ACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||| ||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 74039 ACCTTTCGTGC-GGTCGGAACTTACCCAACAAG-AATTTCGCTACATTAGGACCGTTA 73984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547058166444