Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1453 187 5e-45 seq4226 163 6e-38 seq898 158 3e-36 seq1011 154 3e-35 seq9062 150 4e-34 seq329 122 2e-25 seq285 122 2e-25 seq831 84.2 5e-14 seq124 84.2 5e-14 >seq1453 Length=184460 Score = 187 bits (206), Expect = 5e-45 Identities = 145/170 (85%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| |||||||| || ||||||||||||||||| | || |||| ||||| ||||||| Sbjct 179269 CACACGGCATTG-CTCCGTCAGGCTTTCGCCCATTA-CGAAAATTCTCCACTACTGCCTC 179212 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| ||| | || |||||||||||||| |||||| | Sbjct 179211 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATATGGCTGATCATCCTCTCGGACCAGCT 179152 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| ||| |||||| ||| ||| ||||||||||||||||||| ||| Sbjct 179151 ACTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 179102 Score = 179 bits (198), Expect = 8e-43 Identities = 150/181 (83%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 8 ATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCC 67 ||||| | |||||| | | |||||||||||| | | ||||||||||| |||||| Sbjct 183599 ATCCGTGGGCCTTCTAGCTC-CACGCGGCATTGCTTCG-TCAGGCTTTCGTCCATTGCGA 183542 Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || ||| || ||||||||||||||||||||||||| || ||||||||||| |||||| || Sbjct 183541 AAAATTTCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCATGTCTCAGTTCTAGTGTGGCT 183482 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 ||||||||||||||||||| ||| ||| ||| |||| | ||| ||| |||||||||||| Sbjct 183481 GATCATCCTCTCAGACCAGCTACTAATCATCGTCTTGATAAGCTATTGCCTCACCAACTA 183422 Query 188 G 188 | Sbjct 183421 G 183421 >seq4226 Length=45139 Score = 163 bits (180), Expect = 6e-38 Identities = 139/170 (82%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||||| | ||||| ||| |||| ||| |||| |||| Sbjct 32821 CACGCGGCATTG-CTCCATCAGGCTTTCATCTATTGTGCAAAATTCTCCATTGCTACCTC 32763 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 | |||||||||| | | ||||||||| ||||| ||||||||||||||||| |||||| | Sbjct 32762 CTGTAGGAGTCTAGGCTATGTCTCAGTCCCAGTATGACTGATCATCCTCTCGGACCAGCT 32703 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || || ||| |||| | || ||| ||||||||||||||||||| ||| Sbjct 32702 ACTAATTATCGTCTTGATAAGTTATTGCCTCACCAACTAGCTAATCAGAC 32653 >seq898 Length=358302 Score = 158 bits (174), Expect = 3e-36 Identities = 137/166 (83%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 |||| |||| || |||||||||||||||||| || |||| ||||||||||||| | Sbjct 341046 GCGGTATTG-CTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCTCCACTGCTGCCTCGCA 340988 Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACG 151 | |||||| || | |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 340987 TCGGAGTCGGGGC-GTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCAGACCAGCTACT 340929 Query 152 GATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 |||| || ||||| ||| |||| ||| ||||||||||||| || Sbjct 340928 GATCATCATTTTGGTAAGCTATTATTTCA-CAACTAGCTAATCAGA 340884 >seq1011 Length=254932 Score = 154 bits (170), Expect = 3e-35 Identities = 155/199 (78%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 20 TCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCAC 79 || ||||| || ||| |||| ||||||| ||||||| |||||||||||| ||||||||| Sbjct 126029 TCCTTCACTCATGCGATATTG-CTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCAC 126087 Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139 | ||||| ||| | |||||| || |||||||||||| | |||||| |||||||||| Sbjct 126088 TACTGCCCCCCATGGGAGTCCGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCC-AAA 126146 Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACC 199 ||| ||| || | || | |||||| |||| ||| | |||||||| ||||| | || Sbjct 126147 AGATCAGCTAAGCATAATTTGCTTGGTCAGCCTTTATTTGACCAACTACCTAATACTACG 126206 Query 200 TAGGCTCATCTGATAGCGC 218 ||||||||| | ||||| Sbjct 126207 CAGGCTCATCAAACAGCGC 126225 >seq9062 Length=14617 Score = 150 bits (166), Expect = 4e-34 Identities = 136/169 (80%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || ||||||||| || |||||||||| || ||||| || || | ||||||||||| Sbjct 10645 CATGCGGCATTG-CTCCATCAGGCTTTTGCTTATTGTGGAAATTTTC--ACTGCTGCCTC 10701 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||| ||| || | ||||||| |||| || |||||||||||||||||||| Sbjct 10702 CCGTAGGAGTTTGGGCCATATCTCAGTCCCAGCATGGTTGATCATCCTCTCAGACCAGCC 10761 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || ||| || ||||||| ||| |||||||| |||||||||||||| || Sbjct 10762 ACTAATCATCACCTTGGTAAGCTATTACCTCCCCAACTAGCTAATCAGA 10810 >seq329 Length=700968 Score = 122 bits (134), Expect = 2e-25 Identities = 126/164 (77%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTA 93 ||||||| | | |||||||| | ||| || ||| ||| | ||| |||||||| || Sbjct 492630 GGCATTGCTTCG-TCAGGCTTCCATCCAATGCAAAATGTTCTCTACTAATGCCTCCCATA 492688 Query 94 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGA 153 ||||||||| | ||||| ||||| | |||| ||||||| ||||| |||||| || | Sbjct 492689 GGAGTCTGGGTCATGTCTTAGTTCTAATGTGTTTGATCATTCTCTCGGACCAGCTATTAA 492748 Query 154 TCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || || |||||| ||| ||| ||||||||||||||||||| || Sbjct 492749 TCATCATCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGA 492792 >seq285 Length=822937 Score = 122 bits (134), Expect = 2e-25 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 82 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAG 141 |||||| |||||||| | ||| || |||| ||| |||||||| |||||||||||| | Sbjct 504773 CTGCCTTCCGTAGGAATTTGGGCCATGTCGTAGTCCCAGTGTGGTTGATCATCCTCTTGG 504832 Query 142 ACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||||| ||| |||| || ||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 504833 ACCAGCTACTGATCATCTCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 504889 >seq831 Length=299777 Score = 84.2 bits (92), Expect = 5e-14 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| ||| || | || | ||| |||| |||||| Sbjct 88905 CTTTACAAGCAGCACTGCCCTTCTT-CACCCACACGATAGTG-CAGGACCAGGTTTTCGC 88848 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||| | | || ||| |||||| || | ||||| | | Sbjct 88847 CCATTGTCCAAGATTCCCCAATACCACC-CCCACGGGAGTCCAAGCCATATCTCAATCCT 88789 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174 |||||| ||||||||| ||||||| || | || | | |||||| |||| || Sbjct 88788 AGTGTGGTTGATCATCCAAAGAGACCAGCTAAGCTTCATTGGCTTGGTCAGCCTTT 88733 >seq124 Length=1137588 Score = 84.2 bits (92), Expect = 5e-14 Identities = 126/179 (70%), Gaps = 15/179 (8%) Strand=Plus/Plus Query 19 TTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCA 78 |||| || | || |||| |||| || |||| ||||||| | |||| || |||| | | Sbjct 891547 TTCTATCTC-CATGCGGTATTG-CTCTATCAAGCTTTCGTCTATTGCGAAAAATTCTCTA 891604 Query 79 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 138 || |||| |||||||||||| || || |||||| || |||||||| Sbjct 891605 CTACTGCTTCCCGTAGGAGTTTGAGCCATGTCTCGGTCCCAGTGTG-------------G 891651 Query 139 CAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 |||||||| ||| |||| || || || ||| ||| |||| ||| ||||||||| || Sbjct 891652 CAGACCAGCTACTGATCATCATGTTAGTAAGCTATTGTCTCATCAATTAGCTAATCAGA 891710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071713175680