Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1100 168 2e-39 seq620 145 3e-32 seq5514 120 1e-24 seq1259 109 2e-21 seq275 89.7 2e-15 seq58 75.2 4e-11 >seq1100 Length=222598 Score = 168 bits (186), Expect = 2e-39 Identities = 343/495 (69%), Gaps = 26/495 (5%) Strand=Plus/Minus Query 93 CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCA 152 |||||| |||| ||||||||||||| || | ||| ||||| || |||| | Sbjct 85731 CCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGA 85672 Query 153 TTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCA 212 ||||| ||| |||||||||| | | ||| ||||||||||||||||| ||||| |||| Sbjct 85671 TTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCA 85612 Query 213 TCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCA 271 ||||| | ||| | || || ||||||||||||||||| | | ||| | | ||||| Sbjct 85611 TCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCA 85552 Query 272 ACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTAT 331 |||||| ||||| |||||| | | |||||||| || | | | | | | Sbjct 85551 ACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGA----ATCT 85497 Query 332 TCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAA 389 || || || | | | || |||| || | || |||| || | | || | Sbjct 85496 TC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC--- 85444 Query 390 CTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTACCTAAAAGGCACTTCAG 447 ||||| | | ||| | | ||||| ||||||| | || || | || | || | Sbjct 85443 CTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGTGC---GCCCGCGC-TCCG 85388 Query 448 CTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCCAGGGG 502 ||| |||| |||||| ||| | | |||||| ||||| ||||||||| |||| Sbjct 85387 CTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGG 85328 Query 503 TACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGC 562 | |||||||||||||||||||||||||||| |||||||||||| |||| || |||||| Sbjct 85327 TTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGC 85268 Query 563 TTAACGGGTGGTCCC 577 ||| |||||||||| Sbjct 85267 TTAGAGGGTGGTCCC 85253 >seq620 Length=413206 Score = 145 bits (160), Expect = 3e-32 Identities = 288/418 (69%), Gaps = 30/418 (7%) Strand=Plus/Plus Query 149 TGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAG 208 ||||||||||||||||||||||| | | | ||| || |||| |||||||| || ||||| Sbjct 50259 TGCATTTCGGGGAGAACCAGCTAGCTCTAGGTTCGAGTGGCATTTCACCC-TAACCACAA 50317 Query 209 GTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCT 268 |||||| || | ||||||| ||| ||||| | ||||||| || | | ||| ||| Sbjct 50318 CTCATCCGCTGACTTTTCAATACCAGTTGGTTCAGACCTCCACTTAGTTTCATCCGAGCT 50377 Query 269 TCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTCATACGC 326 ||| |||| ||||||||||||| | |||| | | | | | ||| || |||| Sbjct 50378 TCATCCTGGTCATGGATAGATCATCCAGGTTCGAATCCATAAGCAGTGACAATCAT---- 50433 Query 327 CCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTAACCTCGCGACAC 381 |||| | |||| |||||||| ||||| | | ||| |||||| || ||| Sbjct 50434 CCTA-TGAAACTCACTTTCGCTGCGGCT----CTAATGGGTTCCCTTAACCAAGC--CAC 50486 Query 382 AACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGC 440 | || | || ||||||||||| || |||||| | |||| | | || Sbjct 50487 TATCCATGAGTCATTGGCTCATTCTTTAATAGGCACACGGTCA--GAGATCATA------ 50538 Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGG 500 ||| |||| || | ||| || ||| |||||| || |||||||||| ||| | Sbjct 50539 --TTCTCCTCCCACTGCTTGGGAGCTCATAGTTTCATGTTCTATTTCACTATCCGATGGA 50596 Query 501 GGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 ||| |||||||| ||| ||||||||||| | | | ||| | |||| | |||||||| Sbjct 50597 GGTTCTTTTCACTTTTTTCTCACGGTACTACTTCACCATCAGACACCTAAGAGTATTT 50654 >seq5514 Length=30179 Score = 120 bits (132), Expect = 1e-24 Identities = 311/468 (66%), Gaps = 27/468 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || ||||||| ||||||||||| | | || || ||| |||||| Sbjct 18039 GCTGCACCTCAACATATTTCGGACAGAACCAGCTAGCTCTGGTTTCGAGTGGTATTTCAC 18098 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 || || ||||| | |||| || | |||||||| | ||| ||| | ||||||| || Sbjct 18099 CC-TAACCACAACTTATCCACTGATTTTTCAACATCAGTCAATTCAGACCTCCACTTAGT 18157 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGTG 314 | |||| |||||| |||| | |||||||||||| | | | ||||| | | || Sbjct 18158 TTCACCCAAGCTTCATCCTGATCTTGGATAGATCACCTAGGTCTGGGTCCATAAGTAATG 18217 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAAC--- 371 || | |||||||| ||||||||||| || | ||| | | ||||| | Sbjct 18218 ACAAT----CGCCCTATGAAGACTCGCTTTCACTGCTGCT----CTGATGGGTTCCCTTA 18269 Query 372 CTCGCGACAC-AACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTA 430 || | ||| | || |||| |||||||| ||||| | ||| ||| || Sbjct 18270 ATCAAGCCACTGTCTATAAGTCGCCGGCTCATTTTTCAATAAATACGTGATCAGAGATTA 18329 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG-TTTCAGGTACTATTTCAC 489 | ||| |||| || | ||| || | || ||||| || |||||| || Sbjct 18330 C----------ATTCTCCTCCCACTGCTTGGGAGCTTACGGTTTTCATGTTCTATTTTAC 18379 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 || | | |||| |||| | |||||||||| |||||| | | |||||||||||| | Sbjct 18380 TCTCTGATGCGGGT-TTTTTTATCTTTCCCTCATGGTACTACTTCACTATCGGTCACCTA 18438 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTT 597 ||||||||||| ||| |||||||| |||||||| || |||| Sbjct 18439 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGTTGATTCACATGAGATTT 18486 >seq1259 Length=190105 Score = 109 bits (120), Expect = 2e-21 Identities = 293/437 (67%), Gaps = 36/437 (8%) Strand=Plus/Minus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTA--TCACGAAGTTTGATTGGCCTTTCA 195 |||| ||| ||||||||||| ||| ||| | ||| || || || || |||| ||||| Sbjct 124832 CTGCGCCTCAATGCATTTCGAGGA-AACTAACTAGTTCTGGA--TTCGAGTGGCATTTCA 124776 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 ||| || || || ||||| || | |||||| | ||| | ||| | |||| || Sbjct 124775 CCC-TAACC-CAACTCATCTGCTGATCCTTCAACATCAGTCGATTCAGACCTCTACTTAC 124718 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGA--TCGT 313 | | |||| |||||| | || ||| ||||||||||| | ||| ||| | | || Sbjct 124717 TTTCACCCAAGCTTCATCTTGATCATTGATAGATCACTCAGGCTCGAGTCCATAAGTAGT 124658 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TA 369 | || ||| |||||| ||||| |||||||| |||| ||| || | || Sbjct 124657 GACAATCA----CCCTATGAAGACTCACTTTCGCTGTGGCT---CCAGTGGGTTCCATTA 124605 Query 370 ACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGG 428 ||| || || || | | |||| | |||||||||||| |||||||| || Sbjct 124604 ACCAAGC--CATTACCTATGAGTCGCTGACTCATTCTTCAACAGGCACGCGGT------- 124554 Query 429 TACCTAAAAGGCAC-TTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTC 487 || || ||| ||| |||| | || || || | ||| | || ||||||| Sbjct 124553 ----TAGAAATCACATTCTCCTCCCATTACATGAGAGCTCACGATTTTATGTTCTATTTC 124498 Query 488 ACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 |||| ||| ||||| ||||||| |||| ||||| ||||| | |||||| |||| | Sbjct 124497 ACTCTCCGAT-GGGGTTCTTTTCATCTTTTCCTCATAGTACTATTTTGCTATCAGTCATC 124439 Query 548 AAGGAGTATTTAGGCTT 564 |||||||||||| ||| Sbjct 124438 TAGGAGTATTTAGCCTT 124422 >seq275 Length=784850 Score = 89.7 bits (98), Expect = 2e-15 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 189 CCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTC 248 ||||||||||||| ||||| ||||||||| | ||| | || || |||||||||||||| Sbjct 567805 CCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACATGGGTTCGGTCCTC 567864 Query 249 CACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 || | | ||| | | ||||||||||| ||||| |||||| ||| |||||||| Sbjct 567865 CAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATC-GATCGGTTCGGGTC 567921 >seq58 Length=1689606 Score = 75.2 bits (82), Expect = 4e-11 Identities = 101/141 (72%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 151 CATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGT 210 |||||||| |||||||||||| | | |||||| |||| ||||| | ||| |||| | Sbjct 266246 CATTTCGGAGAGAACCAGCTAGCTCTGGGTTTGAGTGGCATTTCATCTCTAATCACAACT 266187 Query 211 CATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTC 270 |||| | | | ||||| | ||| ||||| | ||||||| | ||| || ||||| Sbjct 266186 AATCCATTGATTCTTCAATATCAGTCGGTTCAGACCTCCACTTAATTTTATCCAAGCTTC 266127 Query 271 AACCTGCCCATGGATAGATCA 291 | | | | ||||||||||| Sbjct 266126 ATCTTAGTCGTGGATAGATCA 266106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817113682944