Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq5514 123 6e-26 seq1100 111 4e-22 seq1259 95.1 3e-17 >seq5514 Length=30179 Score = 123 bits (136), Expect = 6e-26 Identities = 248/354 (70%), Gaps = 13/354 (4%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 ||||||||| |||| ||| | |||||| ||||| | |||||| ||| || |||| Sbjct 18122 TTTTTCAACATCAGTCAATTCAGACCTCCACTTAGTT-TCACCCAAGCTT-CATCCTGAT 18179 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 | | ||||||||| || | | | ||||| || | ||| | ||||||| |||| Sbjct 18180 CTT-GGATAGATCACCTAGGTCT-GGGTCCATAAGTAAT-GACAAT-CGCCCTATGAAGA 18235 Query 149 CTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 |||||||| | || | ||| | ||| |||| | ||||||| ||||||||| Sbjct 18236 CTCGCTTT-CACTGCTGCTCTGATGGGTTCCCTTAATCAA-GCCACTGTCTATAAGTCGC 18293 Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACG 266 | | |||| | ||| | |||| ||| | | | | ||||||||||||| | Sbjct 18294 CGGCTCATTTTTCAATAAATACGTGATCAGAGATTACATTCTCCTCCCACTGCTTGGGAG 18353 Query 267 CATACGGTTT-CAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325 | |||||||| || | ||||||| |||| | | |||| || ||| |||||||||| Sbjct 18354 CTTACGGTTTTCATGTTCTATTTTACTCTCTGATGCGGGTTTTTTTAT--CTTTCCCTCA 18411 Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 ||||||| |||||||||||||| || |||||||||||||| | | |||||| Sbjct 18412 TGGTACTACTTCACTATCGGTCACCTAGGAGTATTTAGCCTTGCAAGGTGGTCC 18465 >seq1100 Length=222598 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 85379 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 85321 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 85320 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 85261 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 85260 GTGGTCCCCC 85251 >seq1259 Length=190105 Score = 95.1 bits (104), Expect = 3e-17 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACT 257 || |||||||||| |||| | ||| ||| |||| || | | || | | |||||| | Sbjct 124589 ATGAGTCGCTGACTCATTCTTCAACAGGCACGCGGTTAGAAATCACATTCTCCTCCCATT 124530 Query 258 GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 | || || ||| ||| | | |||||||||||| || | |||||||||||| || Sbjct 124529 ACATGAGAGCTCACGATTTTATGTTCTATTTCACTCTCCGAT--GGGGTTCTTTTCATCT 124472 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 || ||||| |||||| || ||||| |||| || |||||||||||||| Sbjct 124471 TTTCCTCATAGTACTATTTTGCTATCAGTCATCTAGGAGTATTTAGCCTTG 124421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241267797504