Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1453 172 1e-40 seq898 136 8e-30 seq4226 134 3e-29 seq9062 120 6e-25 seq1011 105 1e-20 seq285 104 5e-20 seq329 93.3 8e-17 seq124 82.4 2e-13 >seq1453 Length=184460 Score = 172 bits (190), Expect = 1e-40 Identities = 142/172 (83%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| |||||| | || || | ||||| ||||||||||||| Sbjct 179264 GGCATTGCTCCGTCAGGCTTTCGCCCATTACGAAA-ATTCTCCACTACTGCCTCCCGTAG 179206 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||||| |||| | ||| |||||| | || ||||| ||| Sbjct 179205 GAGTCTGGGCCGTGTCTCAGTCCCAATATGGCTGATCATCCTCTCGGACCAGCTACTGAT 179146 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCC 172 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| Sbjct 179145 CATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC 179094 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| |||||| | || || || ||||||||||||||||| Sbjct 183574 GGCATTGCTTCGTCAGGCTTTCGTCCATTGCGAAAAATTTCCTACTGCTGCCTCCCGTAG 183515 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||| ||||||||| | | |||||| | ||| |||||||| || ||||| || Sbjct 183514 GAGTCTGGGCCATGTCTCAGTTCTAGTGTGGCTGATCATCCTCTCAGACCAGCTACTAAT 183455 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153 | ||| |||| | |||||| ||||||||||| Sbjct 183454 CATCGTCTTGATAAGCTATTGCCTCACCAACTA 183422 >seq898 Length=358302 Score = 136 bits (150), Expect = 8e-30 Identities = 133/169 (79%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| || || | ||||||||||||| | | |||||| Sbjct 341038 GCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCTCCACTGCTGCCTCGCATCGGAGTCG 340979 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||| |||||||||||||| |||| | | ||| |||||||| || ||||| |||| || Sbjct 340978 GGGC-GTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCAGACCAGCTACTGATCATCAT 340920 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||| |||||||| ||| |||||| |||||| | |||||||| || Sbjct 340919 TTTGGTAAGCTATTATTTCA-CAACTAGCTAATCAGATGCGAGCCCCTC 340872 Score = 73.4 bits (80), Expect = 8e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282 |||| ||||||||| |||| || ||| |||| |||| ||||||||||| || | | Sbjct 341593 TATGGGGTATTAGCAACTGTTTTCAGTTGTTGTTCCCCTCTTAAAGGCAGGTT-CTTATG 341651 Query 283 TGTTACTCACCCGTCCGCCACT 304 ||||||||||||||||||||| Sbjct 341652 CGTTACTCACCCGTCCGCCACT 341673 >seq4226 Length=45139 Score = 134 bits (148), Expect = 3e-29 Identities = 212/304 (70%), Gaps = 16/304 (5%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| | ||||||||| || | ||| |||| ||||| |||| Sbjct 32816 GGCATTGCTCCATCAGGCTTTCATCTATTGTGCAAAATTCTCCATTGCTACCTCCTGTAG 32757 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||| ||| ||||||||||||| | || | | ||| |||||| | || ||||| || Sbjct 32756 GAGTCTAGGCTATGTCTCAGTCCCAGTATGACTGATCATCCTCTCGGACCAGCTACTAAT 32697 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||| |||| | | |||| ||||||||||| |||||| | | |||||| || | Sbjct 32696 TATCGTCTTGATAAGTTATTGCCTCACCAACTAGCTAATCAGACATGAGCCCCTCCTCGG 32637 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 || | ||||| | | | ||| | | | ||||||||| | Sbjct 32636 ACG--GATTCTTTCTTTTA-------------CTTCTCAGCCGACGAGGTATTAGCAACC 32592 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| ||| |||| ||| || |||||||| || |||||||| |||||| ||||| Sbjct 32591 ATTTCCAGTTGTTGTTCCCCTCCAAAGGGCAGGTT-CTTACGTGTTAGTCACCCATCCGC 32533 Query 301 CACT 304 |||| Sbjct 32532 CACT 32529 >seq9062 Length=14617 Score = 120 bits (132), Expect = 6e-25 Identities = 132/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| ||| | |||||| || | | ||||||||||||||||| Sbjct 10650 GGCATTGCTCCATCAGGCTTTTGCTTATTGTGGAAATTTTC--ACTGCTGCCTCCCGTAG 10707 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| |||||| | ||||||||||| ||| | ||| |||||||| || || || || Sbjct 10708 GAGTTTGGGCCATATCTCAGTCCCAGCATGGTTGATCATCCTCTCAGACCAGCCACTAAT 10767 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | || |||||| ||||||| ||| ||||||| |||||| | || ||||| || Sbjct 10768 CATCACCTTGGTAAGCTATTACCTCCCCAACTAGCTAATCAGATGCAAGCCCCTC 10822 >seq1011 Length=254932 Score = 105 bits (116), Expect = 1e-20 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||| ||||| ||| | |||||| Sbjct 126049 GCTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCACTACTGCCCCCCATGGGAGTCC 126108 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||| | |||||| | ||| || || | |||| || | | Sbjct 126109 GGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCC-AAAAGATCAGCTAAGCATAATTTG 126167 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || |||| | |||||||||||||| Sbjct 126168 CTTGGTCAGCCTTTATTTGACCAACTACCTAAT 126200 >seq285 Length=822937 Score = 104 bits (114), Expect = 5e-20 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48 CTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAG 107 |||||| |||||||| | |||||| |||| ||||||| ||||| | ||| ||||| | Sbjct 504773 CTGCCTTCCGTAGGAATTTGGGCCATGTCGTAGTCCCAGTGTGGTTGATCATCCTCTTGG 504832 Query 108 TCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCG 167 || ||||| |||| || |||||| |||||| ||||||||||| |||||| | | || Sbjct 504833 ACCAGCTACTGATCATCTCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACACG 504892 Query 168 AGCCC 172 ||||| Sbjct 504893 AGCCC 504897 >seq329 Length=700968 Score = 93.3 bits (102), Expect = 8e-17 Identities = 205/305 (67%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| || | ||| || ||| | | | ||| |||||||| ||| Sbjct 492630 GGCATTGCTTCGTCAGGCTTCCATCCAATGCAAAATGTTCTCTACTAATGCCTCCCATAG 492689 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||| | ||||| ||| | |||||| | ||| ||||| | || |||| || Sbjct 492690 GAGTCTGGGTCATGTCTTAGTTCTAATGTGTTTGATCATTCTCTCGGACCAGCTATTAAT 492749 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | || |||||| |||||| ||||||||||| |||||| | || | ||| ||| Sbjct 492750 CATCATCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGATGCAAACCCTTCT---- 492805 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 || ||| || || | | ||||| | | |||| | ||||||| | Sbjct 492806 -CG---AATGATTCCTC-------CTTTTCCTCCTCAGCC--TATGGGATATTAGCAATT 492852 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||| || ||| |||| ||| || || || || || |||||||||||||| ||| | Sbjct 492853 GTTTTCAGTTGTTGTTCCCCTCCCAAGGGTAGATT-CTTCCGTGTTACTCACCCATCCAC 492911 Query 301 CACTA 305 || || Sbjct 492912 CATTA 492916 >seq124 Length=1137588 Score = 82.4 bits (90), Expect = 2e-13 Identities = 115/164 (70%), Gaps = 13/164 (8%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 71 |||| | |||| | |||| | || || | | ||| |||| |||||||||||| || ||| Sbjct 891572 ATCAAGCTTTCGTCTATTGCGAAAAATTCTCTACTACTGCTTCCCGTAGGAGTTTGAGCC 891631 Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGG 131 |||||| |||||| ||||| ||| || ||||| |||| || || | Sbjct 891632 ATGTCTCGGTCCCAGTGTGG-------------CAGACCAGCTACTGATCATCATGTTAG 891678 Query 132 TGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | |||||| ||||| ||| || |||||| | |||||||| || Sbjct 891679 TAAGCTATTGTCTCATCAATTAGCTAATCAGATGCGAGCCCCTC 891722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998132868096