Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1100 159 8e-37 seq5514 105 2e-20 seq321 98.7 2e-18 seq266 87.8 4e-15 >seq1100 Length=222598 Score = 159 bits (176), Expect = 8e-37 Identities = 152/192 (79%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 86014 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 85958 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 85957 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 85898 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 85897 CTCGATCACTTCCTTT-CCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 85839 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 85838 GTTTCCCTCTCG 85827 >seq5514 Length=30179 Score = 105 bits (116), Expect = 2e-20 Identities = 138/189 (73%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| ||||| ||| | ||| ||| || | || || || Sbjct 17694 CCACAGCTTCGGCAGATCGCTTAACCCCA--TTCATCTTCGATGCAAGAGTGCTCGATCA 17751 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||| ||||||||||||||| |||||||| | || || ||| ||| | ||| Sbjct 17752 GTGAGCTATTACACACTCTTTCAAGGAT-GCTGCTTCTAGGCAAATCTCTTGGCTATCTC 17810 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 | | | || || ||| |||||| | || ||||||||||||||| |||| | | Sbjct 17811 TGTGCCCCTACCTCTTTTATCACTGACTGGTCATTTAGGGGCCTTAGCTAGTGATTCGAG 17870 Query 387 CTGTTTCCC 395 |||||| || Sbjct 17871 CTGTTTTCC 17879 >seq321 Length=710470 Score = 98.7 bits (108), Expect = 2e-18 Identities = 139/193 (72%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 |||||||||||| ||| ||||| ||||| | ||| || | | | |||| || | Sbjct 439276 CCACAGCTTCGGTAGATCACTTA-GCCCCATT-CATCTTCAGTACAAGAGCACTCGATTA 439333 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||| | ||||||||||||| ||||||| ||| | || || ||||||||||| | Sbjct 439334 GTGAGCTATCATGCACTCTTTCAAGAATGGCTGGTTCTAGGCAAATCTCCTGGTTGTTTG 439393 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | || ||||| | || | ||||||||||||||| | ||| || Sbjct 439394 TGCACTGCTACCTCCTT-----CATAGCGGTTATTTAGGGGCCTTAGCTAGTAATCCGGA 439448 Query 387 CTGTTTCCCTCTC 399 |||||||||||| Sbjct 439449 TTGTTTCCCTCTC 439461 >seq266 Length=832214 Score = 87.8 bits (96), Expect = 4e-15 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| ||||||| ||| |||| |||||| | ||| ||||||| | | || || || Sbjct 177932 CCACAACTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCA 177875 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAA 311 |||||||||||||||||||||||||| ||| |||||| | || || Sbjct 177874 GTGAGCTATTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAA 177830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177284921344