Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq16439 118 9e-25 seq4226 93.3 4e-17 seq1453 91.5 1e-16 seq9062 82.4 6e-14 seq1931 77.0 3e-12 >seq16439 Length=2844 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 251 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 193 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 192 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 133 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 132 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 93 >seq4226 Length=45139 Score = 93.3 bits (102), Expect = 4e-17 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||| || ||||| | || | ||| | ||| ||| ||||||| |||||| || Sbjct 33710 GAGTTGCAACCTGCAATCTGATCTGAGGATGGATTTT-TGGAGTTAGCTCACCCTCGTGG 33652 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | | |||| ||| | |||||||| ||||||| | | |||||||| ||| Sbjct 33651 GATCGTGACCCTTTGTTTCGGCCATTGTAGCACGTGTGTCGTCTAGGGCATAAGGGGCAT 33592 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151 || ||||||||||||||| ||||||||||| Sbjct 33591 GATGACTTGACGTCATCCTCACCTTCCTCC 33562 >seq1453 Length=184460 Score = 91.5 bits (100), Expect = 1e-16 Identities = 118/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || ||||||| | | | ||| | ||| || |||||| || |||| Sbjct 180158 CGAGTTGCAGCCTGCAATCCGAATTGAGGATGAATTTT--GGAGCTAGCTCACCTGCGCG 180101 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || |||| ||| ||||||||| ||||||| |||| | ||||| || || Sbjct 180100 GGATCACGACCCTTTGTCCCGACCATTGTACCACGTGTGTCGCCCAAGGCATAAAGGGCA 180041 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||| |||||||||| | || |||| Sbjct 180040 TGATGACTTGACGTCATTTTTACCTTCCTCCAGCTTATCAC 180000 >seq9062 Length=14617 Score = 82.4 bits (90), Expect = 6e-14 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 5 GTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGT 63 ||||||| || ||||||| ||| | ||| | ||| | | ||||||| | ||| || Sbjct 9759 GTTGCAGCCTGCAATCCGAACTGAGGATGGATTTTTAGAG-TTAGCTCACTCTCATAGGA 9817 Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123 | ||| ||| ||| ||||| || ||||||| ||| |||||||| ||||| Sbjct 9818 TCGCGATCCTTTGTCGTGGCCATTATAGCACGTGTGTCACCCAGGGCATAAGGGGCATGA 9877 Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 ||||||||||||||| || |||||||||| || ||| Sbjct 9878 TGACTTGACGTCATCCTCATCTTCCTCCGGCTTATCA 9914 >seq1931 Length=138391 Score = 77.0 bits (84), Expect = 3e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 45 TTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCC 104 ||||||| || ||||||| ||| | ||| ||| | |||||||| |||||| || Sbjct 64909 TTAGCTCACCTTCGCGGGATGGTGATCCTTTGTCTCGGCCATTGTAGCACGTGTTTCACC 64968 Query 105 CTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 | ||||| | ||||| ||||||||||||||| ||||||||||| Sbjct 64969 CCGGATATAAGAGGCATGATGACTTGACGTCATCCTCACCTTCCTCC 65015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415892173320