Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq99 125 1e-26 seq1453 91.5 2e-16 seq5055 86.0 1e-14 seq898 86.0 1e-14 seq9062 84.2 4e-14 seq79 84.2 4e-14 seq150 77.0 5e-12 >seq99 Length=1347885 Score = 125 bits (138), Expect = 1e-26 Identities = 199/284 (70%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 7 CTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCC 66 |||||| ||||| |||||| | | |||||| || |||| | |||||||| | | Sbjct 298766 CTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGTCGTTGGTGTTCTTTC 298707 Query 67 GTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGA 126 || |||| ||||||||||||| ||| |||| |||| | | |||| || Sbjct 298706 CGATCTCTATGCATTTCACCGCTCCACCGAAAATTTTCTCTGCCCTTATCGTACTCCAGC 298647 Query 127 AAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTT 186 |||| | | | | | ||||||||||| | ||| || | |||||| Sbjct 298646 TTGGTAGTTCTACCGCCTGTCCA-GGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAA 298588 Query 187 CCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTAC 246 || |||||| | |||||| |||||| | |||||||||||||||| ||| || |||| Sbjct 298587 GCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTAC 298528 Query 247 CGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||| ||||||||| ||||||||||||| || Sbjct 298527 CGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 298484 >seq1453 Length=184460 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | ||||| |||||| | | |||||||||||||| ||| || ||||| Sbjct 179426 CCACCTACAGACACTTTATGCCCAATCATTTCGGATAACGCTTGCATCCTTTGTCTTACC 179367 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||| |||||| || ||||||||||||| || Sbjct 179366 ACGGCTGCTGGCACAGAGTTAGTCGATGCTTATTCCTCAGATA 179324 >seq5055 Length=71670 Score = 86.0 bits (94), Expect = 1e-14 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 ||||| |||||| | |||||||||||||||| ||| | ||||||||||| || ||| Sbjct 52551 CTTTATGCCCAATCATTCCGGATAACGCTTGCATCCTCTATCTTACCGCGGCTACTAGCA 52610 Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||||| ||||||||||||| || Sbjct 52611 CAGAGTTAGCCGATGCTTATTCCTCAGATA 52640 >seq898 Length=358302 Score = 86.0 bits (94), Expect = 1e-14 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 || |||||||| | ||| || | |||||| || |||||| ||||| ||| Sbjct 341478 GGATTGAGCCCTGGGATTTGACGGCAGACTTGAAAAGCCACCTACAGATGCTTTATGCCC 341419 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | ||| ||||| |||||| ||| || ||||||||||| |||||| | ||||||| Sbjct 341418 AATCATTCCAGATAATGCTTGCATCCTCTGTCTTACCGCGGCTACTGGCATGGAGTTAGC 341359 Query 271 CGTGGCTTATTCCTCAG 287 || | ||||||||||| Sbjct 341358 CGATGTTTATTCCTCAG 341342 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| ||||| |||||| | ||| |||||||||||| ||| || ||||| Sbjct 341208 CCACCTACAGATGCTTTATGCCCAATCATTCCAGATAACGCTTGCATCCTCTGTCTTACC 341149 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAG 287 | |||| |||||| | ||||||||| | ||||||||||| Sbjct 341148 GTGGCTACTGGCATGGAGTTAGCCGATGTTTATTCCTCAG 341109 >seq9062 Length=14617 Score = 84.2 bits (92), Expect = 4e-14 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 152 GGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCA 211 |||||||||| || ||| || | ||| || || |||||| ||||||||||| Sbjct 10451 GGTTGAGCCCTGAGATTTGACGGCGGACCTGAAAAGCCACCTACAAATGCTTTACACCCA 10510 Query 212 ATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCC 271 || | || |||||||| ||| ||| || ||||| ||||| || |||| ||||||| Sbjct 10511 ATCATTCTGGATAACGTTTGTATCCTTTGTCTTACCACGGCTACTAGCACAGAGTTAGCT 10570 Query 272 GTGGCTTATTCCTCAGGTA 290 | ||||||||||||| || Sbjct 10571 GATGCTTATTCCTCAGATA 10589 >seq79 Length=1584733 Score = 84.2 bits (92), Expect = 4e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 217 TCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGC 276 |||||||||||||||| ||| || ||||| ||||||||||||| ||||||||| || Sbjct 863190 TCCGGATAACGCTTGCATCCTCTGTCTTACCACGGCTGCTGGCACAGAGTTAGCCGATGC 863249 Query 277 TTATTCCTCAGGTA 290 ||||||||||| || Sbjct 863250 TTATTCCTCAGATA 863263 >seq150 Length=1123864 Score = 77.0 bits (84), Expect = 5e-12 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 |||||| ||||| | || |||||||| |||| ||| || ||| ||||||||||||| Sbjct 416544 CTTTACGTCCAATCATTCTGGATAACGTTTGCATCCTCTGTCTTATTGCGGCTGCTGGCA 416603 Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | | ||||||| ||||||||||||| || Sbjct 416604 CAGAATTAGCCGATGCTTATTCCTCAGATA 416633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828585176076