Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq783 96.9 4e-18 seq38 78.8 1e-12 >seq783 Length=351393 Score = 96.9 bits (106), Expect = 4e-18 Identities = 133/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| |||||||| | |||||||| ||| ||| | |||||||| ||||| Sbjct 346861 TTACTTTGAAGAAATTAGAATGCTCAAAGCAAGCCCACGCTTTGGATACATTAGCATGGG 346920 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTT-TGTAGGT-TTCTAGGACCGCCCGTAATGAT 130 |||| || | |||| | ||| || || ||| || ||| || | | |||||||| Sbjct 346921 ATAACAGCACAGGATTTT-GGTCCTTGTTGTGTTGGCATTCGAGATCGGA--GTAATGAT 346977 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | |||||| |||||| | |||| || |||| ||||||||||||||||||||| Sbjct 346978 TAAGAGGGATAGCCGGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 347037 >seq38 Length=1915673 Score = 78.8 bits (86), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| ||||||| || |||||| || | |||||||| || ||||| | |||||| | || Sbjct 1679938 ACTATTACTTTAAAGAAATTAAAGTGCTCAAAGCAAACCCATGCTCTGGATACATAAGCA 1679997 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | || | ||||| ||| || || |||| || ||||| Sbjct 1679998 TGGGATAACATTATAGGATTT-CGATCCTATTGTGTTGGCTTTCAGGATCGGA-GTAATA 1680055 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | | |||| | || | |||| || || || |||||||||||||||| Sbjct 1680056 ATTAAGAGAAACAGTCAGAGGCATTCATATTTCATAGTTGGAGTTGAAATTCTTGGATTT 1680115 Query 189 AT 190 || Sbjct 1680116 AT 1680117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511867290240