Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1100 196 8e-48 seq1061 158 2e-36 seq3566 156 7e-36 seq5514 138 2e-30 seq1199 138 2e-30 seq536 131 3e-28 seq949 123 4e-26 seq480 122 1e-25 seq11 118 2e-24 seq1076 111 2e-22 seq899 86.0 1e-14 seq231 84.2 3e-14 seq8986 78.8 1e-12 >seq1100 Length=222598 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 88037 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 87978 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 87977 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 87918 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 87917 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 87858 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 87857 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 87798 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 87797 AGTCGACATCG 87787 >seq1061 Length=256299 Score = 158 bits (174), Expect = 2e-36 Identities = 201/276 (73%), Gaps = 7/276 (3%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| ||||||||| |||| | |||| | ||| |||| ||| |||| Sbjct 240976 GGTGGGCTTACTACTTAGATGCTTTCAACAGTTATTCACTCCGTACTTGGCTACCCA--- 240920 Query 64 ATGCACTTGGCAGT----ACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGT 119 ||| | | || | || |||| |||||||||| ||||| || | | ||||||| Sbjct 240919 ATGTTTATCGTAGAGATGATAATTGGTACACCAGAGGTGTGTCCTTCTTGATTCTCTCGT 240860 Query 120 ACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTC 179 |||| | || ||||||||| ||| | | || | |||||| | || |||||||||| Sbjct 240859 ACTAGAAAAAGGTCCTCTCAATGCTCCAATGTCCGCATCGGATATGAACTGAACTGTCTC 240800 Query 180 GCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGA 239 |||| ||||||||||||||| ||| | ||||||||| |||| |||||||||||||| | Sbjct 240799 GCGATGTTCTGAACCCAGCTTACGTACTACTTTAATGGACGAATAGCCCAACCCTTGGAA 240740 Query 240 CCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| ||||||| | || |||||||||||| Sbjct 240739 TATACTATAGCCCCAATTGGCGAAGAGCCGACATCG 240704 >seq3566 Length=49936 Score = 156 bits (172), Expect = 7e-36 Identities = 193/260 (74%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGG-CA 75 ||||||||| |||||| |||| || |||| ||| |||||| | | ||| || Sbjct 10192 CTTAGATGCTTTCAGCAGTTATTTGCTCTGCACTTGGCTACCCAGCGTTTATCGTGGGCA 10133 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | || |||| |||||||||| ||| ||| | |||||||||||||||| || |||| Sbjct 10132 CGATAATTGGTACACCAGAGGTGCATCCTTCCAG-TCCTCTCGTACTAAGGCAAGGTCCT 10074 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || ||| || | | ||| |||||||||||||| |||||||||| ||| | Sbjct 10073 CTCAATGCTCGAACGTCCGCATCAAATATGGACCGAACTGTCTAGCGACGTTCTAAACTC 10014 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||| || |||||| |||| || |||| || ||| || Sbjct 10013 AACTCACGTACCATTTTAATGAGCGAATAG-CCAACCTTTGGAACATACTACATCCCTAG 9955 Query 256 GATGAGACGAGCCGACATCG 275 | || |||||||||||| Sbjct 9954 ATGGCGAAGAGCCGACATCG 9935 >seq5514 Length=30179 Score = 138 bits (152), Expect = 2e-30 Identities = 195/273 (71%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||| ||||| |||||| |||| | ||| |||| ||| |||| Sbjct 16095 GGTGGGCTTACTACTTGGATGCTTTCAGCAGTTATTCACTCCGTACTTGGCTACCCAATG 16154 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | | | | || |||| |||||||||| |||| || || | |||| |||| Sbjct 16155 TTTACCGTAGAGATGATAATTGGTACACCAGAGGTGTGTCTTTCTCGATTCTCTTATACT 16214 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | | | ||||||||| ||| || | | |||||| | |||||||||||||||| Sbjct 16215 AGAAAAGGATCCTCTCAATGCTCCAACATCTGCATCGGATATGAACCGAACTGTCTCGCG 16274 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||||| ||| ||| || || | ||||||||| |||| |||||||||||||| | | Sbjct 16275 ACGTTCTAAACTCAGTTCATGTACTGCTTTAATGGACGAATAGCCCAACCCTTGGAATAT 16334 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||| | || |||||||||||| Sbjct 16335 ACTATAGCCCCAATTGGCGAAGAGCCGACATCG 16367 >seq1199 Length=206590 Score = 138 bits (152), Expect = 2e-30 Identities = 176/240 (73%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCAC--TTGGC 74 ||||||| | |||||| |||||| |||| |||| || ||||| ||| | | ||| Sbjct 195783 CTTAGATACTTTCAGCCGTTATCCACTCCACACTTGCCTACCCAG-TATTTATCGTGGGC 195841 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 | | |||| || ||||| |||| || || || |||||||||| ||| || || | | Sbjct 195842 ATGATAACTAGTACACCAAAGGTGCATCATTCTCGATCCTCTCGTATTAAAGAAAGGTTC 195901 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||||| | ||| | | | |||| |||| |||||||||| ||||||||||||| Sbjct 195902 TCTCAATGCTTTAACGTCGGCACCAGATATGGACTGAACTGTCTCATGACGTTCTGAACC 195961 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 ||| || ||| | ||||||||| |||| || ||||| ||| | || |||| |||||||| Sbjct 195962 CAGATCACGTATCGCTTTAATGGACGAATAGACCAACGCTTAGAACATACTACAGCCCCA 196021 >seq536 Length=489579 Score = 131 bits (144), Expect = 3e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 169 CGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCC 228 ||||||||||| |||||||||||| ||||||| ||| || |||||||||||||||||||| Sbjct 119547 CGAACTGTCTCACGACGTTCTGAATCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCC 119606 Query 229 AACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||| | |||| |||||||||| | || || ||||||||| Sbjct 119607 AACCCTTGGAATATACTACAGCCCCAGGTGGCGAAGAACCGACATCG 119653 >seq949 Length=270181 Score = 123 bits (136), Expect = 4e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||||||||||||||| ||| |||||||||||||||| ||| | |||||||||| Sbjct 15420 GATATGGACCGAACTGTCTCACGAAGTTCTGAACCCAGCTCACGTACTGCTTTAATGGGT 15479 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| ||||| |||||| || |||| ||||||| | | || |||||||||||| Sbjct 15480 GAACAACCCAATCCTTGGAACATACTATAGCCCCAAGTGGCGAAGAGCCGACATCG 15535 >seq480 Length=510625 Score = 122 bits (134), Expect = 1e-25 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 159 GGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGG 218 ||||| ||| ||||||||||||| | |||| ||| ||||||| |||||| |||||| ||| Sbjct 90842 GGATATGGATCGAACTGTCTCGCAATGTTCCGAATCCAGCTCACGTGCCGCTTTAACGGG 90901 Query 219 CGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||| |||| |||| || |||| ||| | |||| | || |||||||||||| Sbjct 90902 CGAACAGCCTAACCTTTGGAACATACTACAGTCTCAGGTGGCGAAGAGCCGACATCG 90958 >seq11 Length=2925444 Score = 118 bits (130), Expect = 2e-24 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 84 GGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATT 143 ||| ||||| ||||| ||| ||| ||||||| |||||| || ||||||| || | Sbjct 1712893 GGTACACCATAGGTTGACCCAACCCAGTCCTCTAGTACTAGGGTTGGCTCCTCACAGTTC 1712834 Query 144 TCCT----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 ||| || || ||| |||||| |||||||| |||| || ||| | |||||| || Sbjct 1712833 TCCCTTTAACACCAACGGTAGATAGGAACCGAACTATCTCATGATGTTTTAAACCCAACT 1712774 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259 | | | || |||| || | ||||| | |||||||||||||| ||| | || ||||||| Sbjct 1712773 CACATACCACTTTCATCGATGAACAATCGAACCCTTGGGACCTTCTTTAACCTCAGGATG 1712714 Query 260 AGACGAGCCGACATCG 275 || ||| |||||||| Sbjct 1712713 TGATGAGTCGACATCG 1712698 >seq1076 Length=305446 Score = 111 bits (122), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 49 CTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCC 107 ||| ||| || ||| | | | || |||| | ||||||| |||| |||| | | Sbjct 222308 CTTGGCTACCTAGCATTTACTCTGGGCACGATAACTGGTATACCAAAGGTGCAGCTTTTT 222249 Query 108 CGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGA 167 | | ||||||||||| | | || | || |||| ||| | | || | |||||| || Sbjct 222248 TGATTCTCTCGTACTACGAAAAGATTCTTTCAATATTCTAATGTCCGCACCGGATATAGA 222189 Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||| || |||||||||||| | | || |||||||||||||||| | Sbjct 222188 CCGAACTGTCTCACGATATTTTGAACCCAGCTCACATACC-GTTTAATGGGCGAACAGTC 222130 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 ||||||||| || | | ||| |||||| | || ||||||| ||| Sbjct 222129 TAACCCTTGGAACACAGTACAGTCCCAGG-GGTGAAGAGCCGATATC 222084 >seq899 Length=293458 Score = 86.0 bits (94), Expect = 1e-14 Identities = 153/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 35 TTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTT-GGCAGTACAACTGGTGCACCAG 93 |||| | ||||| |||| ||| ||| | | | | |||| | |||| | || | | Sbjct 123437 TTATTCGTTCCACACTTGGCTATCCAACATTTATCGTAGGCACGATAACTAATACATCGG 123378 Query 94 AGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCC 153 |||| ||| ||| |||||| |||||| | | | |||| || ||| | || Sbjct 123377 AGGTACATCCTTCCATATCCTCTTGTACTAGAAAAAAATTCTCTTAATATTCTAATGCTT 123318 Query 154 ACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTA 213 | |||||| || |||||| |||| | || ||||||| | ||||| || | ||||| Sbjct 123317 GCATCGGATATAGATCGAACTATCTCACAACATTCTGAATCTAGCTCATGTACTGCTTTA 123258 Query 214 ATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 |||| ||||||||||| ||||| || |||| ||||||||| Sbjct 123257 ATGGATGAACAGCCCAATCCTTGAAACATACTACAGCCCCAG 123216 >seq231 Length=965820 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 113 CTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAA 172 |||| |||||| ||| || ||||||||| || ||||| ||| |||| | |||||||| Sbjct 60589 CTCTTGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCTACGTCGGACATGGACCGAA 60530 Query 173 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTA 213 ||||| |||||| |||||||||||| ||| || |||| Sbjct 60529 TCGTCTCATGACGTTTTGAACCCAGCTCACGTACCGTTTTA 60489 >seq8986 Length=9173 Score = 78.8 bits (86), Expect = 1e-12 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| ||| |||||| ||| |||| ||||||| |||||| | | || Sbjct 3063 GGCATGATAACTGGTACACTAGAGGTGCATCCTTCCCAGTCCTCTTGTACTAGGAAAAGA 3004 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 ||||||||| || || | | | ||||| ||||||||||||||| ||| ||| Sbjct 3003 TCCTCTCAATGCTCTAACACTCGCACTGGATATGGACCGAACTGTCTCACGATGTT 2948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780597617616