Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1453 179 9e-43 seq4226 159 8e-37 seq898 159 8e-37 seq9062 156 1e-35 seq329 114 3e-23 seq1011 111 4e-22 seq285 100 7e-19 seq124 77.0 8e-12 >seq1453 Length=184460 Score = 179 bits (198), Expect = 9e-43 Identities = 156/191 (82%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||| | |||||||| ||| ||| |||||| ||| | |||||||| |||||||| Sbjct 179294 TTCACGACCTGTGGGCCTTCTACAT-CACACGGCATTGCTCCGTCAGGCTTTCGCCCATT 179236 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||| ||||| ||||||||||||||||||||| |||||||||||| ||| | | Sbjct 179235 ACGAAA-ATTCTCCACTACTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATAT 179177 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| ||| || ||| || ||| || | ||| Sbjct 179176 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACCA 179117 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 179116 ACTAGCTAATC 179106 Score = 170 bits (188), Expect = 5e-40 Identities = 141/172 (82%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 |||||||| | |||||||||| ||| | |||||||| || |||||| | || ||| || Sbjct 183592 GGCCTTCTAGCTCCACGCGGCATTGCTTCGTCAGGCTTTCGTCCATTGCGAAAAATTTCC 183533 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||| Sbjct 183532 TACTGCTGCCTCCCGTAGGAGTCTGGGCCATGTCTCAGTTCTAGTGTGGCTGATCATCCT 183473 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAG 189 ||||||||||||| ||| ||| || | | || ||| || | |||||||| Sbjct 183472 CTCAGACCAGCTACTAATCATCGTCTTGATAAGCTATTGCCTCACCAACTAG 183421 >seq4226 Length=45139 Score = 159 bits (176), Expect = 8e-37 Identities = 276/403 (68%), Gaps = 30/403 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| |||||||||| | | ||| Sbjct 32847 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCATCAGGCTTTCATCTATT 32788 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 |||||| |||| ||| |||| ||||| |||||||||| | | ||||||||| ||||| | Sbjct 32787 GTGCAAAATTCTCCATTGCTACCTCCTGTAGGAGTCTAGGCTATGTCTCAGTCCCAGTAT 32728 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | ||| |||||||||| ||||||||| || ||| || | | | ||| || | ||| Sbjct 32727 GACTGATCATCCTCTCGGACCAGCTACTAATTATCGTCTTGATAAGTTATTGCCTCACCA 32668 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | || | | ||| | || || | ||||| Sbjct 32667 ACTAGCTAATCAGACATGAGCCCCTCC------------TCGGACGGATTCTTTCTTT-T 32621 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 ||| | | | ||||||||| ||| |||||||| ||| | |||||||| |||| Sbjct 32620 ACTTCTCAGCCGACGAGGTATTAGCAACCATTTCCAGTTGTTGTTCCCCTCCAAAGGGCA 32561 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | ||| |||||| ||||||||| ||| || ||| Sbjct 32560 GGTTCTTACGTGTTAGTCACCCATCCGCCACT------GGAAACA-----TTGC------ 32518 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 || |||| ||| |||||||||||| || | ||| |||||||| Sbjct 32517 TTTCCGTCCGATTTGCATGTGTTAAGCATATCGCTAGCGTTCA 32475 >seq898 Length=358302 Score = 159 bits (176), Expect = 8e-37 Identities = 285/410 (70%), Gaps = 32/410 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || || || || ||||| | | | |||| || ||| | |||||||| |||||||| Sbjct 341075 TTCACGACTCGTGGGTCTTCTACCTCTATGCGGTATTGCTCCGTCAGGCTTTCGCCCATT 341016 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||| ||||||||||||| | | |||||| || | |||||||||| ||||||| Sbjct 341015 GCAGAAAATTCTCCACTGCTGCCTCGCATCGGAGTCGGGGC-GTGTCTCAGTCCCAGTGT 340957 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | ||| |||||||||||||||||||| |||| || | ||| || |||| | || Sbjct 340956 GACTGATCATCCTCTCAGACCAGCTACTGATCATCATTTTGGTAAGCTATTATTTC-ACA 340898 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| || | | | ||| | | || || ||| ||| |||| Sbjct 340897 ACTAGCTAATCAGATGCGAGCCCCTCC--TCG-GACAG-------ATTCCTCCT-TTTGC 340849 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || ||||||||| || ||||||||| || | ||||||| | || Sbjct 340848 TCCTCAGCC--TACAGGGTATTAGCAACTGTTTCCAGTTATTGTTCCCCTCCCAAGGACA 340791 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | ||||||| ||| |||||||||| ||| | || ||| || Sbjct 340790 GGTTCTTACGCATTACTTACCTGTCCGCCACT------AGAAATATCA-----CTTTCT- 340743 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||| | ||||||||||||||| ||||| Sbjct 340742 -----GTTTGACTTGCATGTGTTAAGTATGCCGCCAGCGTTCATCCTGAG 340698 Score = 82.4 bits (90), Expect = 2e-13 Identities = 114/159 (72%), Gaps = 18/159 (11%) Strand=Plus/Plus Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315 |||| ||||||||| || |||| |||| ||| | |||||| |||||| ||| | | Sbjct 341593 TATGGGGTATTAGCAACTGTTTTCAGTTGTTGTTCCCCTCTTAAAGGCAGGTTCTTATGC 341652 Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375 |||||||||||||||||||| ||| || || ||| || || ||| Sbjct 341653 GTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTGCT------GTCCGA 341695 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||||||||| || | ||||||||||||| ||||| Sbjct 341696 C-TGCATGTGTTAAGCATACCGCCAGCGTTCATCCTGAG 341733 >seq9062 Length=14617 Score = 156 bits (172), Expect = 1e-35 Identities = 283/410 (69%), Gaps = 33/410 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || |||| |||||||| | | || ||||||| ||| |||||||||| || ||| Sbjct 10619 TTCACGACCCATGGGCCTTCTACCTCCATGCGGCATTGCTCCATCAGGCTTTTGCTTATT 10678 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || || | ||||||||||||||||||||| ||| || | ||||||| |||| | Sbjct 10679 GTGGAAATTTTC--ACTGCTGCCTCCCGTAGGAGTTTGGGCCATATCTCAGTCCCAGCAT 10736 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 || || |||||||||||||||||| | ||| || ||| ||| || |||||| | ||| Sbjct 10737 GGTTGATCATCCTCTCAGACCAGCCACTAATCATCACCTTGGTAAGCTATTACCTCCCCA 10796 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| || | | ||| || ||| ||| ||| |||| Sbjct 10797 ACTAGCTAATCAGATGCAAGCCCCTCCTCAAG-CAGA---------TTCCTCCT-TTTGC 10845 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | | ||||||| ||| ||| ||| ||| | |||||||| |||| Sbjct 10846 TCCT--CAGGCTACGAGATATTAGCAACCATTTTTAGTTGTTGTTCCCCTCCA-AGGGCA 10902 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 ||| | | ||||||||| || |||||| ||| || || |||| Sbjct 10903 AGTTCTTACGCGTTACTCACCTGTTTGCCACT------GGAAACACCA-----CTTC--- 10948 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| ||||||||| ||||| || |||||| ||| |||| ||||| Sbjct 10949 ---CCGTCTGACTTGCATATGTTATGCATGCCGCTAGCATTCATCCTGAG 10995 >seq329 Length=700968 Score = 114 bits (126), Expect = 3e-23 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 |||||||| | | || ||||| ||| | |||||||| | ||| || ||| ||| | Sbjct 492612 GGCCTTCTACCTCCATATGGCATTGCTTCGTCAGGCTTCCATCCAATGCAAAATGTTCTC 492671 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||| |||||||| ||||||||||| | ||||| ||||| | |||| || |||| || Sbjct 492672 TACTAATGCCTCCCATAGGAGTCTGGGTCATGTCTTAGTTCTAATGTGTTTGATCATTCT 492731 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||| ||||||||| ||| || || ||| || ||| || | |||||||||||||| Sbjct 492732 CTCGGACCAGCTATTAATCATCATCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 492789 >seq1011 Length=254932 Score = 111 bits (122), Expect = 4e-22 Identities = 128/171 (75%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 24 CTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGC 83 ||||| || ||| || |||| ||| ||||| | |||||||| ||| |||||||||| | Sbjct 126031 CTTCACTCATGCGATATTGCTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCACTAC 126090 Query 84 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGA 143 |||| ||| | |||||| || |||||||||||| | |||||||||| |||||| ||| Sbjct 126091 TGCCCCCCATGGGAGTCCGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCC-AAAAGA 126149 Query 144 CCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 |||||| | || | || ||| ||| ||| ||||||| ||||| Sbjct 126150 TCAGCTAAGCATAATTTGCTTGGTCAGCCTTTATTTGACCAACTACCTAAT 126200 >seq285 Length=822937 Score = 100 bits (110), Expect = 7e-19 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 |||||| |||||||| | ||| || |||| ||| ||||||||| || ||||||||| | Sbjct 504773 CTGCCTTCCGTAGGAATTTGGGCCATGTCGTAGTCCCAGTGTGGTTGATCATCCTCTTGG 504832 Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||||| |||| || ||| ||| || ||| || | |||||||||||||| Sbjct 504833 ACCAGCTACTGATCATCTCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 504885 >seq124 Length=1137588 Score = 77.0 bits (84), Expect = 8e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 || |||| || ||| |||| |||| || | |||| | || |||| | ||| |||| ||| Sbjct 891556 CATGCGGTATTGCTCTATCAAGCTTTCGTCTATTGCGAAAAATTCTCTACTACTGCTTCC 891615 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||||||||| || || |||||| || |||||||||| Sbjct 891616 CGTAGGAGTTTGAGCCATGTCTCGGTCCCAGTGTGGC 891652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222072934656