Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1453 215 1e-53 seq99 163 7e-38 seq150 161 2e-37 seq4226 158 3e-36 seq43 150 4e-34 seq9062 147 5e-33 seq23 145 2e-32 seq1011 102 2e-19 seq329 100 7e-19 seq898 89.7 1e-15 seq5055 82.4 2e-13 >seq1453 Length=184460 Score = 215 bits (238), Expect = 1e-53 Identities = 296/406 (73%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| || |||||| ||||||||||||| ||||| || ||| || ||| Sbjct 179328 TGAGGAATAAGCATCGACTAACTCTGTGCCAGCAGCCGTGGTAAGACAAAGGATGCAAGC 179387 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||| ||| | ||||| ||||| || |||||||| || ||||||| || ||| Sbjct 179388 GTTATCCGAAATGATTGGGCATAAAGTGTCTGTAGGTGGCTTTTTAAGTCCATCGTCAAA 179447 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAA-CTGCAGGGCTAGAGTGCAGGAGGGGC 183 | |||||||||| | || | | ||||| || | ||| || | | |||||| Sbjct 179448 TCTCAAGGCTCAACCCTGA-ACAGGTGGTGAAAACTACCAAGCTGGAATATGGTAGGGGC 179506 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | | |||| || || ||||||||||| |||||| || | | |||||||| | ||| Sbjct 179507 A-GAAAAATTT-TAATGGAGCGGTGAAATACGTAGAGATCGGAAAGAACACCAACGACGA 179564 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 | || | || | | | |||||||||||| ||||||| || ||||||| |||| Sbjct 179565 AAGCACTCTACTAGGCCGACACTGACACTGAGAGACGAAAGCTAGGAGAGCAAATGGGAT 179624 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGT 362 ||||||||| ||||||| ||||||||||||| |||||||||| | | ||| || | Sbjct 179625 TAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGTATCGACC 179683 Query 363 GCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| |||||||||||||| Sbjct 179684 CATGCAGTGCTGTAGCTAACGCGTTAAGTATCCCACCTGGGGAGTA 179729 >seq99 Length=1347885 Score = 163 bits (180), Expect = 7e-38 Identities = 218/302 (72%), Gaps = 1/302 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 298488 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 298547 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 298548 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 298607 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | ||||||| ||| |||| | | |||| | ||| |||| | | ||||| Sbjct 298608 TCCCAGGGCTCAA-CCCTGGACAGGCGGTAGAACTACCAAGCTGGAGTACGATAAGGGCA 298666 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||| ||| ||||||||||||| |||| || | | |||||||| | |||| Sbjct 298667 GAGAAAATTTTCGGTGGAGCGGTGAAATGCATAGAGATCGGAAAGAACACCAACGACGAA 298726 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| |||||| || ||||||| ||||| Sbjct 298727 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGTTAGGAGAGCAAATGGGATT 298786 Query 305 AG 306 || Sbjct 298787 AG 298788 >seq150 Length=1123864 Score = 161 bits (178), Expect = 2e-37 Identities = 282/405 (70%), Gaps = 18/405 (4%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||| | |||||||||||||| ||| || ||| || | | Sbjct 416629 TGAGGAATAAGCATCGGCTAATTCTGTGCCAGCAGCCGCAATAAGACAGAGGATGCAAAC 416570 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||||||| |||| | ||| ||||||| | ||||||| || | ||||| | || ||| Sbjct 416569 GTTATCCAGAATGATTGGACGTAAAGCATCTGTAGGTGACTTTTCAAGTCCGCCGTCAAA 416510 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 ||| | || || | ||| || | || |||| | ||| ||| Sbjct 416509 TCCTA------------GAGAG-GCGATAGAACTATCAAG-CTGGAGTACGATAGGAGCA 416464 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | | || ||| |||||||| |||| || || | ||||||| |||||| Sbjct 416463 CA-GGAATTTCGA-TGGAGCAGTGAAATGTATAGAGATCAGAAAAAACACCAACGGCGAA 416406 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || ||||||||| | |||||||||||| ||||||| |||||||||| |||| Sbjct 416405 AGCACTTTGCTGGACCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGAGATT 416346 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| |||||| | ||||||||||| |||||| | | | | ||| || | Sbjct 416345 AGATACCCCAATAGTCCTAGTCGTAAACGATGGATACTAAGCG-CTGTGCGTATCGACCC 416287 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| |||||||||| ||||||||||| Sbjct 416286 GTGCAGTGCTGTAGCTAACGCGTTAAGTATTCCGCCTGGGGAGTA 416242 >seq4226 Length=45139 Score = 158 bits (174), Expect = 3e-36 Identities = 276/395 (70%), Gaps = 10/395 (3%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| ||||||| |||| | ||| || ||| || ||| |||| ||||| | Sbjct 32894 CGGCTAACTCTGTGCCAGTAGCCACAATAAGACAGAGGATGCAAGCATTATTTGGAATGA 32953 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||||| | |||||||| || | ||||| | ||| | | |||||||| Sbjct 32954 TTGGGCGTAAAGTATCTGTAGGTGGCTTTTCAAGTCCATCATCAAATCCCAAGGCTCAAC 33013 Query 139 CCCGGGACTG-CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTA 197 || | || | | | |||||| | ||| |||| | | ||||||| | | || | | Sbjct 33014 CCTAG-ACAGACGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA-GAGAAAATTTTC 33071 Query 198 G-TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTG 256 | || ||||||||||||| |||| || | | |||||||| | |||| || | ||| Sbjct 33072 GATGGAGCGGTGAAATGCATAGAGATCGGAAAGAACACCAACGACGAAAGCACTCTACTG 33131 Query 257 GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 316 | | |||||||||||| |||||| |||||||||| ||||||||||||| || Sbjct 33132 GGCCAACACTGACACTGAGAGAAGAAAGCTAGGGGAGCAAATGGGATTAGATACCCCAGT 33191 Query 317 AGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA---AGTGCTCCGGTGCC 373 ||||| ||| ||||||||| ||| |||| | | ||||| | | | || | Sbjct 33192 AGTCCTAGCCATAAACGATGGATATTAGG---CACTGTGCATATCGACCCATGCAGTACT 33248 Query 374 GCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || ||| ||||||| ||| |||||||||| Sbjct 33249 ATAGCTAATGCATTAAGTATCCCATCTGGGGAGTA 33283 >seq43 Length=1757131 Score = 150 bits (166), Expect = 4e-34 Identities = 235/329 (71%), Gaps = 13/329 (4%) Strand=Plus/Plus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 |||||||||||||| ||||| ||||| || |||| ||| |||||| || ||| | ||| Sbjct 489554 AGCCCCGGCTAACTCCGTGCTAGCAGATGCAGTAAGACGG-GGGGGCAAGTGTTCTTCGG 489612 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGC 133 ||| | || ||||||||| ||||| ||| | | | ||||||| || | Sbjct 489613 AATAATAGGACGTAAAGGGCACGTAGTCGGTGAATCGGGCTGAAAGTGAAAGT---TGCC 489669 Query 134 TCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 || | | ||| |||| | ||||| | || || ||| | || || ||||| Sbjct 489670 AAAAACTGGTGGAATGCTCTCGAAACCAATTCA---CTTGAGCGAGACAGAGGAGAGTGG 489726 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 | || | |||||| |||||||| |||||||| | |||||| ||| || ||||| | Sbjct 489727 AGTTTCGTGTGTAGGGGTGAAATCTGTAGATATACGAAGGAACGCCAAAAGCAAAGGCAG 489786 Query 250 CTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 || |||| | || | || ||| || ||||||| |||||||| || |||||||||| Sbjct 489787 CTCTCTGGGTCCCTAGC-GATGCTGTGGTGCGAAAGCATGGGGAGCGAATAGGATTAGAT 489845 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||| |||||||||||||| Sbjct 489846 ACCCTGGTAGTCCATGCCGTAAACGATGA 489874 >seq9062 Length=14617 Score = 147 bits (162), Expect = 5e-33 Identities = 281/406 (69%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| | ||||||| |||| || ||||| ||||| || ||| | | | Sbjct 10585 TGAGGAATAAGCATCAGCTAACTCTGTGCTAGTAGCCGTGGTAAGACAAAGGATACAAAC 10526 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||||||| |||| | |||| |||||| | |||||||| || | | ||| | || ||| Sbjct 10525 GTTATCCAGAATGATTGGGTGTAAAGCATTTGTAGGTGGCTTTTCAGGTCCGCCGTCAAA 10466 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGC 183 | ||||||||| || || | | || ||||| | ||| |||| | | |||| | Sbjct 10465 TCTCAGGGCTCAACCTTGG-ACAGATAGTGGAAACTACTAAGCTGGAGTACGGTAGGGAC 10407 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | | | || | | | ||||||||||||| |||| || | || ||||||| | | || Sbjct 10406 A-GAGAAAATTTTGATAGAGCGGTGAAATGCATAGAGATCAAAAG-AACACCAATAGTGA 10349 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 | || | |||| || ||| |||||||| | ||||| || ||||||| |||| Sbjct 10348 AAGCACTCTACTGGGCTAACACTAACACTGAGAGACAAAAGCTAGGAGAGCAAATGGGAT 10289 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTG 363 ||||||||| ||||||| | || |||||||| |||||||||| | | ||| || | Sbjct 10288 TAGATACCCCAGTAGTCCTAGTCGCAAACGATGGATACTAGGTG-CTGTGCGTATCGGCC 10230 Query 364 C-TCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| ||| |||| ||||||| |||| || ||||| Sbjct 10229 CGTGTAGTGCTATAGCTAACGTGTTAAGTATCCCACTTGAAGAGTA 10184 >seq23 Length=2323044 Score = 145 bits (160), Expect = 2e-32 Identities = 134/170 (79%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 176 GGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACC 235 ||| ||||| |||||| | ||| |||||||||||||||||| || | | ||||||| Sbjct 922337 GGATGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACC 922396 Query 236 AGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCA 295 | |||||| || |||||| | | |||||||||||| ||||||| |||||||| Sbjct 922397 AACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCA 922456 Query 296 AACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 || ||||||||||||| ||||||| ||||||||||||| |||||||| Sbjct 922457 AATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG 922506 >seq1011 Length=254932 Score = 102 bits (112), Expect = 2e-19 Identities = 233/342 (68%), Gaps = 23/342 (7%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC------GTAG 55 ||| ||||| |||||||| ||||||| | ||| |||||||||| | | | | | Sbjct 125981 ACTCGAGGAAGAAGCCCCAGCTAACTCCATGCTAGCAGCCGCGATTAGATCGGGGGGGGG 125922 Query 56 GGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCA 115 ||||| || ||| | ||||| |||||| ||||| || |||||| ||| | || Sbjct 125921 GGGGCAAGTGTTCTT-GGAATGACTGGGTGTAAAAGGCACGTAGGCGGTGAATCGGGTT- 125864 Query 116 GAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCA 175 || ||||| | | || | ||| ||| |||| | |||||| || ||||| Sbjct 125863 GAAGTGAATGTC-ATCAAT-AACTAACGGAATGCTATCGAAACTAATTCACTTGAGTG-- 125808 Query 176 GGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACC 235 || |||| |||| |||||| ||| |||| | ||||| | |||||| || Sbjct 125807 --AG-----AGTGAAATTGT--GTGTAG-GGT-AAATCCATAGATCTACAAAGGAACGCC 125759 Query 236 AGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCA 295 | | ||||| ||| |||| ||||| || || ||||||| |||||||| Sbjct 125758 AAAAGTGAAGGGAGCTCTCTGGGTCCCTACTGATGCTTGGGTGCGAAAGCATGGGGAGCG 125699 Query 296 AACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||| |||||||| | |||||| ||||| Sbjct 125698 AACAGGATTAGATACCCTAGTAGTCCATGTCGTAAATGATGA 125657 >seq329 Length=700968 Score = 100 bits (110), Expect = 7e-19 Identities = 233/346 (67%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||||| | |||| || |||||| ||| | || | ||||| | ||| || Sbjct 492569 TATTTGAGAAATAAGCATCGACTAACTCTATGCTTGTAGACATGGTAAGATAGAGGATGC 492510 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || |||||| ||||| | || |||||||| | || |||| || | ||||| || Sbjct 492509 AAGTGTTATCTGGAATGATTGTGCGTAAAGCATTTATAAGTGGCTTTTCAAGTCCACCGT 492450 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTG-CTTTTGAAACTGCAGGGCTAGAGTGCAGGAG 179 ||| | | |||||| || | ||| | | | |||||| | |||||||| | || Sbjct 492449 CAAATCCCAAGGCTCA-CCACTAGACAGACGATGGAAACTACCAAGCTAGAGTATGGTAG 492391 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||||| |||| | ||| ||||||||||||| |||| ||| | | ||||||| | Sbjct 492390 GGGCACAAAAAATTTCG-GTGGAGCGGTGAAATGCATAGAGATTGGAAAAAACACCAACG 492332 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 | || | |||||||| | ||||| | |||| |||||| ||||||||| Sbjct 492331 ACAAAAGTACTATGCTGGACCGACACTGA-ATTGAGAGATGAAAGCTAAGGGAGCAAATG 492273 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 ||||| |||||| |||||| || ||||| |||| ||| |||| Sbjct 492272 AGATTAAATACCCCAATAGTCCTAGCTGTAAATGATGGATATTAGG 492227 >seq898 Length=358302 Score = 89.7 bits (98), Expect = 1e-15 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| || | ||||||||| | |||||| ||||||||||| || ||| || ||| Sbjct 341343 TGAGGAATAAACATCGGCTAACTCCATGCCAGTAGCCGCGGTAAGACAGAGGATGCAAGC 341402 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||||| ||||| | ||||| ||||| | |||||||| || | ||||| | || ||| Sbjct 341403 ATTATCTGGAATGATTGGGCATAAAGCATCTGTAGGTGGCTTTTCAAGTCTGCCGTCAAA 341462 Query 125 GGCTATGGCTCAACCCCGG 143 | | ||||||| || || Sbjct 341463 TCCCAGGGCTCAATCCTGG 341481 >seq5055 Length=71670 Score = 82.4 bits (90), Expect = 2e-13 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| |||| || ||||||||||| | ||| || ||| Sbjct 52636 TGAGGAATAAGCATCGGCTAACTCTGTGCTAGTAGCCGCGGTAAGATAGAGGATGCAAGC 52577 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 |||||||||||| | ||||| ||||| | ||||||| || | ||||| Sbjct 52576 GTTATCCGGAATGATTGGGCATAAAGCATCTATAGGTGGCTTTTCAAGTC 52527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202878071808