Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq9237 219 8e-55 seq783 210 4e-52 seq2348 174 3e-41 seq2593 156 8e-36 seq171 138 2e-30 seq332 105 1e-20 seq1856 102 2e-19 seq711 102 2e-19 seq547 96.9 7e-18 seq204 96.9 7e-18 seq108 96.9 7e-18 seq349 91.5 3e-16 seq4049 84.2 4e-14 seq513 84.2 4e-14 seq30 78.8 2e-12 seq2222 75.2 2e-11 seq256 75.2 2e-11 seq118 75.2 2e-11 >seq9237 Length=17698 Score = 219 bits (242), Expect = 8e-55 Identities = 166/196 (85%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | |||||||| || || Sbjct 17698 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCC 17639 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| ||| | ||||| |||||||||| ||||||| Sbjct 17638 TTGGCCGACAGGCCCGGGTAATCTTCAAAAATTTCATCGTGATGGGGATAGATCATTGCA 17579 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||| ||||||| |||||||||| || ||||||||| |||||||| ||| Sbjct 17578 ATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCACGAGTCATCAGCTCGCGTTGACTAC 17519 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 17518 GTCCCTGCCCTTTGTA 17503 >seq783 Length=351393 Score = 210 bits (232), Expect = 4e-52 Identities = 203/258 (79%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| | | | || | |||||||||||||||||||| ||||||||| Sbjct 347492 CTTCTTAGAGGAACTATGGCCACTTAGACCATGGAAGTTTGAGGCAATAATAGGTCTGTG 347551 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||| ||||| |||||| ||| || | |||||||| | |||||||| || Sbjct 347552 ATGCCCTTAAATGTTTTGGGCCACACACGTGTTACACTGATGTATTCAACGAGTCTATAG 347611 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||||||| || | | | ||||||| ||| | ||||| |||||||||| ||||| Sbjct 347612 CCTTGGCC-GACAGACCAGATAATCTTCAAAAATTTCATCGTGATGGGGATAGATCATTG 347670 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||| |||||||||||| | |||| | ||| | ||||||||| ||| |||| | Sbjct 347671 CAATTATTGGACTTCAACGAGGAGTTCCTATTGAGCATGAGTCATCAGCTCGCATTGACT 347730 Query 311 ACGTCCCTGCCCTTTGTA 328 || || ||||||||| || Sbjct 347731 ACATCTCTGCCCTTTATA 347748 >seq2348 Length=93415 Score = 174 bits (192), Expect = 3e-41 Identities = 144/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 80098 TTGAGGCAATAACTGGTCTGTGATGCCCTTAGATGTTTTAGGCCGCATGCGCGCTACACT 80157 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 | | |||||||| || |||||||| ||| | | ||||||| ||| | || Sbjct 80158 GCTGTACTCAACGAGTCTATAGCCTTGGCCAATAGGCTTAGATAATCTTCAAAAATTTTG 80217 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 ||||| |||||| ||| |||||||||| ||| ||||||||||||||| |||||||| Sbjct 80218 TCGTGATGGGGACAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAA 80273 >seq2593 Length=130948 Score = 156 bits (172), Expect = 8e-36 Identities = 141/176 (80%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||| Sbjct 96945 TTGAGGCAATAACTGGTCTGTGATGCCCTTAGATGTTTTAAGCCGCATGCGCGCTACACT 97004 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 || | ||||||| || |||||||| ||| | | ||||||| ||| | | Sbjct 97005 GATGTACTTAACGAGTCTATAGCCTTGGCCAATAGGCTTAGATAATCTT-CAAAATTTTA 97063 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 ||||| |||||| ||| ||||| |||||||| ||||||||||||||| |||| ||| Sbjct 97064 TCGTGATGGGGACAGATCATTGTAATTATTGGTCTTCAACGAGGAATACCTAATAA 97119 >seq171 Length=1170488 Score = 138 bits (152), Expect = 2e-30 Identities = 146/192 (76%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||||||||||||||||| |||||||| | | | ||| || || || |||||| Sbjct 950773 TTAGATGTTCTGGGCCGCACGCGTGCTACACTAATATATTCAATGATTTTATAGCCTTGG 950714 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 | | ||| | |||| ||||| ||| | || | | |||||||| ||| ||||| Sbjct 950713 CTGACAGGCCCGGGTGATCTTCAAAAA---TTTCATCATAGGGATAGATCATCTCAATTG 950657 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| |||||||| | |||| || ||||||| | ||||||||| || ||||| | |||| Sbjct 950656 TTGATCTTCAACAAAGAATTCCAAGTAAGCATGAGTCATCAGCTCGTGTTGACAATGTCC 950597 Query 317 CTGCCCTTTGTA 328 || ||||||||| Sbjct 950596 CTACCCTTTGTA 950585 >seq332 Length=679277 Score = 105 bits (116), Expect = 1e-20 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||| ||||||||||||| |||||||| | | ||| |||| || |||||| Sbjct 532785 TTAGATGTTTTGGGCCGCACGCGTGCTACACTAATGTATTCAATGAGTCTATAGCCTTGG 532844 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||||||| |||||||| ||| | ||||| | | |||||| |||||||||| Sbjct 532845 CCGATAGGTCTGAGTAATCTTCAAAAATTTCATCGTGATAGAGATAGATCATTGCAATTG 532904 Query 257 TTGCTCTTCAA 267 ||| ||||||| Sbjct 532905 TTGGTCTTCAA 532915 >seq1856 Length=160884 Score = 102 bits (112), Expect = 2e-19 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||||||||||| |||||| |||||||| | | |||| ||| || ||||| Sbjct 96125 TTAGATGTTCTGGGCCACACGCGTGCTACACTAATGTATTCAACAAGTCTATAGCCTTGA 96066 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| || |||| || ||| | || || |||||||||| |||| |||| Sbjct 96065 CCGACAGGCTCGGATAATATT-CAAAATTTCATCATGATGGGGATAGATCATTATAATTG 96007 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 ||| |||| |||||| ||| |||| ||||| | ||||||||| Sbjct 96006 TTGGTCTTTAACGAGAAATTCCTAATAAGCATGAGTCATCAGC 95964 >seq711 Length=367681 Score = 102 bits (112), Expect = 2e-19 Identities = 103/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||||| | | |||||| | |||||||| | ||| |||| || |||||| Sbjct 39673 TTAGATGTTCTAGACTGCACGCATGTTACACTGATGTATTCAATGAGTCTATAGCCTTGG 39732 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| || ||||| ||||||| ||| | | ||||| |||||||||| |||||||||| Sbjct 39733 CCGACAGATCTGGATAATCTT-CAAAATTTTATCGTGATGGGGATAGATCATTGCAATTG 39791 Query 257 TTGCTCTTCAACG 269 ||| ||||||||| Sbjct 39792 TTGGTCTTCAACG 39804 >seq547 Length=457613 Score = 96.9 bits (106), Expect = 7e-18 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||| |||||||||||||| ||||||||| | |||||||| || ||||| Sbjct 184660 TTAGATGCTCTGGGCCGCACGCATACTACACTGATGTATTCAACGAGTCTATAGGCTTGG 184601 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| |||| ||||||| ||| | || || |||||||| | |||||||||| Sbjct 184600 CCGACAGGCCTGGATAATCTTCGAAAATTTCATCATGATGGGGATAAATCATTGCAATTG 184541 Query 257 TTGCTCTTCAACG 269 || ||||||||| Sbjct 184540 TTATTCTTCAACG 184528 >seq204 Length=993586 Score = 96.9 bits (106), Expect = 7e-18 Identities = 102/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||| ||||||||||| | |||||||||| | |||||||| || ||||| Sbjct 813709 TTAGATGTTTTGGGCCGCACGTGTGCTACACTGATGTATTCAACGAGTCTATAGCCTTGA 813768 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 || | |||| ||||||||| ||| | || || |||||||||| |||||||||| Sbjct 813769 TCGATAAGTCT-GGTAATCTTCAAAAATTTCATCATGATGGGGATAGATCATTGCAATTG 813827 Query 257 TTGCTCTTCAACG 269 ||| ||||| ||| Sbjct 813828 TTGGTCTTCCACG 813840 >seq108 Length=1361919 Score = 96.9 bits (106), Expect = 7e-18 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||| ||||||||||||| |||||| ||| | ||| |||| || |||||| Sbjct 657491 TTAGATGTTTTGGGCCGCACGCGTGCTACATTGATGTATTCAATGAGTCTATAGCCTTGG 657550 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| || ||||||| ||| | || || | |||||||| ||||||||||| Sbjct 657551 CCGATAGGCTCGGATAATCTTCAAAAATTTCATCATGATAGGGATAGATCATTGCAATTA 657610 Query 257 TTGCTCTTCAA 267 ||| ||||||| Sbjct 657611 TTGATCTTCAA 657621 >seq349 Length=686341 Score = 91.5 bits (100), Expect = 3e-16 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 |||| || ||| ||||||||| |||||||||| | |||||||| || |||||||| Sbjct 520281 AGATATTTTGGACCGCACGCGTGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCC 520222 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 ||| | | |||||| ||| | | ||| |||||||||| |||| |||||||| Sbjct 520221 AACAGGCTCGAGCAATCTTCAAAAATTTCATTGTGATGGGGATAGATCATTACAATTATT 520162 Query 259 GCTCTTCAAC 268 |||||||||| Sbjct 520161 GCTCTTCAAC 520152 >seq4049 Length=54062 Score = 84.2 bits (92), Expect = 4e-14 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||||| |||| || || |||||||||| | |||||||| || |||||| Sbjct 16392 TTAGATGTTCTAGGCCACATGCATGCTACACTGATGTATTCAACGAGTCTATAGCCTTGG 16451 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 || ||| || ||||||| ||| | || || |||||||||| ||||| |||| Sbjct 16452 CCAATAGGCTCGGATAATCTTCAAAAATTTCATCATGATGGGGATAGATCATTGTAATTG 16511 Query 257 TTGCTCTTCAA 267 ||| ||||||| Sbjct 16512 TTGGTCTTCAA 16522 >seq513 Length=513755 Score = 84.2 bits (92), Expect = 4e-14 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||||||||||| ||||| |||||||| | | ||| || | || |||||| Sbjct 30908 TTAGATGTTCTGGGCCACACGCATGCTACACTAATGTATTCAATGAATCTATAGCCTTGG 30849 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 | | ||| | |||||||| ||| | || || |||||||||| ||||| |||| Sbjct 30848 CTGATAGGCCCAAGTAATCTTCAAAAATTTCATCATGATGGGGATAGATCATTGTAATTG 30789 Query 257 TTGCTCTTCAACGAGG 272 ||| ||||||||| || Sbjct 30788 TTGGTCTTCAACGTGG 30773 Score = 80.6 bits (88), Expect = 5e-13 Identities = 97/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||||||||| || |||| |||| ||||| | ||| |||| || |||||| Sbjct 98913 TTAGATGTTCTGGGTCGGACGCATGCTATACTGATGTATTCAATGAGTCTATAGCCTTGG 98854 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 | | ||| | | |||||||| ||| | || || |||||||||| ||||||||| Sbjct 98853 CTGATAGGCCCGAGTAATCTTCAAAAATTTCATCATGATGGGGATAGATTATTGCAATTG 98794 Query 257 TTGCTCTTCAAC 268 ||| ||| |||| Sbjct 98793 TTGGTCTCCAAC 98782 >seq30 Length=2113821 Score = 78.8 bits (86), Expect = 2e-12 Identities = 96/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||| || || |||||||||||| |||||||||| | || |||| || ||||| Sbjct 1161052 TTAAATATTTTGGGCCGCACGCCTGCTACACTGATGTATTTAATGAGTCTATAGTCTTGG 1160993 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| | | |||||||| ||| | || || ||| |||||| ||||| ||||| Sbjct 1160992 CCGATAGGCCCGAGTAATCTTCAAAAATTTCATCATGATGGAGATAGATCATTGAAATTA 1160933 Query 257 TTGCTCTTCAA 267 ||| ||||||| Sbjct 1160932 TTGGTCTTCAA 1160922 >seq2222 Length=135402 Score = 75.2 bits (82), Expect = 2e-11 Identities = 95/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||||||||||| |||| ||||| |||| | ||| ||| || | |||| Sbjct 84471 TTAGATGTTCTGGGCCACACGTATGCTACGCTGATGTATTTAACAAGTCTATAGCTTTGG 84412 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 || ||| | | ||| |||| ||| | || | |||||||||| ||||||||||| Sbjct 84411 CCTACAGGCCCGAGTATTCTTCAAAAATTTCATCATAATGGGGATAGATCATTGCAATTA 84352 Query 257 TTGCTCTTCAA 267 ||| ||||||| Sbjct 84351 TTGATCTTCAA 84341 >seq256 Length=873884 Score = 75.2 bits (82), Expect = 2e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 |||||| || | ||||| || ||||||||||||||||||||| |||||| | |||||| Sbjct 551173 AAGTTTAAGATAGTAACAAGTTTGTGATGCCCTTAGATGTTCTAGGCCGCTTGTGCGCTA 551114 Query 165 CACTGA 170 |||||| Sbjct 551113 CACTGA 551108 >seq118 Length=1552418 Score = 75.2 bits (82), Expect = 2e-11 Identities = 96/131 (73%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||||| ||| ||| || |||||||| | | |||| ||| || ||| || Sbjct 339773 TTAGATGTTCTAGGCTGCATGCATGCTACACTAATGTATTCAACAAGTCTATAGCCTCGG 339714 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| | | ||||||| ||| | || || |||||||||| |||||||||| Sbjct 339713 CCGATAGGCCCAGATAATCTT-CAAAATTTCATCATGATGGGGATAGATCATTGCAATTG 339655 Query 257 TTGCTCTTCAA 267 ||| ||||||| Sbjct 339654 TTGGTCTTCAA 339644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946946567168