Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1100 174 5e-41 seq321 100 1e-18 seq620 98.7 3e-18 seq275 93.3 1e-16 seq468 87.8 6e-15 seq5514 86.0 2e-14 seq58 82.4 3e-13 seq1534 77.0 1e-11 >seq1100 Length=222598 Score = 174 bits (192), Expect = 5e-41 Identities = 320/462 (69%), Gaps = 28/462 (6%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 85518 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 85577 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 85578 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 85637 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 85638 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 85695 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGG----GGTCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| |||| || ||||||| Sbjct 85696 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTTGCCCCCATTTCGCTTTACCAAC 85755 Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||||||||| | |||| || ||| || || | ||||| Sbjct 85756 CCCAGGGAAACTCCGAATACAGGCCGTCATCGTTTGTAC----AGACAGACTTCTTGGGT 85811 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 85812 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 85871 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| | || |||| |||| || | |||| | |||| || |||||||||| Sbjct 85872 CACTTAGTGGA---AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 85926 Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||| || ||| |||| |||||| |||||||| ||| || Sbjct 85927 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 85967 >seq321 Length=710470 Score = 100 bits (110), Expect = 1e-18 Identities = 161/226 (71%), Gaps = 13/226 (6%) Strand=Plus/Minus Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || |||||||| || |||||||||||| |||| || |||| | || Sbjct 439461 GAGAGGGAAACAATCCGGATTACTAGCTAAGGCCCCTAAATAACCGCTATG-------AA 439409 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| | ||| | |||| || || | ||| ||||||||| || ||||| Sbjct 439408 GGAGGTAGCAGTGCACAAACAACCAGGAGATTTGCCTAGAACCAGCCATTC-TTGAAAGA 439350 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTC-GGGCGTGGATAATAATCGGGTATTAAGTTG 515 |||| | | ||||||||| ||||| || | || | | ||| ||| ||||| Sbjct 439349 GTGCATGATAGCTCACTAATCGAGTGCTCTTGTACTGAAGATGAATGGGG--CTAAGTGA 439292 Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGCAT 560 ||||||||||| ||||||| | | ||| |||||||||||||||| Sbjct 439291 TCTACCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGCAT 439247 >seq620 Length=413206 Score = 98.7 bits (108), Expect = 3e-18 Identities = 106/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 49 TGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTA 108 ||||||| ||||| ||||||||||| | | | | || |||||||| ||||| ||| Sbjct 50400 TGATCTATCCATGACCAGGATGAAGCTCGGATGAAACTAAGTGGAGGTCTGAACCAACTG 50341 Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 | ||||||| | || ||||||| ||||| || |||||||| || | | ||| | || Sbjct 50340 GTATTGAAAAGTCAGCGGATGAGTTGTGGTTA-GGGTGAAATGCCACTCGAACCTAGAGC 50282 Query 169 TAGCTGGTTCTCTCCGAAA 187 |||||||||||| |||||| Sbjct 50281 TAGCTGGTTCTCCCCGAAA 50263 >seq275 Length=784850 Score = 93.3 bits (102), Expect = 1e-16 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 |||||||| || | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 567921 GACCCGAA-CCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 567863 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 || ||||||||| |||| | ||||| |||||||| ||||| ||||||||||||| Sbjct 567862 GGACCGAACCCATGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGG 567805 >seq468 Length=555598 Score = 87.8 bits (96), Expect = 6e-15 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 35 GACCCGAAACCAAG-TGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||| ||||| || |||||| ||||| | ||||||||| | ||||| || | || Sbjct 100607 GACCCAAAACCTAGATGATCTTGCCATGACTAGGATGAAGCTTGGGTAAAACTAATTTGA 100548 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||| ||||||||||||| || ||| | ||||||| | ||| ||| |||||| ||| Sbjct 100547 GGTCCAAACCCACTAATGTAAAAGAATCAATGGATGAGTTCTGGCTAGAAGTGAAATGCT 100488 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGT 198 | | ||| | || || || ||||| || ||| | || |||| Sbjct 100487 ACTCGAAC-TAGAGTTAAATGCTTCTCCCCAAAATGTGTTGAGGT 100444 >seq5514 Length=30179 Score = 86.0 bits (94), Expect = 2e-14 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| | | | ||||| | | | |||||||| ||| | Sbjct 18239 CGAGTCTTCATAGGGCGATTGTCATTACTTATGGACCCAGACCTAGGTGATCTATCCAAG 18180 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||||||||| | ||| | || |||||||| ||| ||| |||||||||||| Sbjct 18179 ATCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCTGAATTGACTGATGTTGAAAAATC 18120 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || |||| || ||||| || |||||||| | | | || || ||||||||||| | Sbjct 18119 AGTGGATAAGTTGTGGTTA-GGGTGAAATACCACTCGAAACCAGAGCTAGCTGGTTCTGT 18061 Query 182 CCGAAAACTATTTAGGT 198 |||||| | || |||| Sbjct 18060 CCGAAATATGTTGAGGT 18044 >seq58 Length=1689606 Score = 82.4 bits (90), Expect = 3e-13 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 22 GTCGCTGGGTGTAGACCCGAAACCAAG-TGATCTACCCATGGCCAGGATGAAGGTGCGGT 80 ||| ||| | |||| || ||||| | ||||||| ||| | | | ||||||| | | | Sbjct 266079 GTCACTGCTTATAGATCC-AAACCTGGATGATCTATCCACGACTAAGATGAAGCTTGGAT 266137 Query 81 AACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA 140 || | |||||||| ||||| ||| || ||||| ||| | |||| || |||| || Sbjct 266138 AAAATTAAGTGGAGGTCTGAACCGACTGATATTGAAGAATCAATGGATTAGTTGTGATTA 266197 Query 141 GGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | | ||||| || | ||||| || ||||||||||||||||||| Sbjct 266198 GAGATGAAATGCCACTCAAACCCAGAGCTAGCTGGTTCTCTCCGAAA 266244 >seq1534 Length=230094 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 ||||||||| |||| ||| || ||||| ||| | ||||||| | ||| ||||| ||||| Sbjct 140293 TGGAGGTCCCAACCGACTGATATTGAAGAATCAACGGATGAGTTATGGTTAGGGATGAAA 140352 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA-ACTATTTA 195 || | | || | | ||||||||||||||||||| || ||||| Sbjct 140353 TGCCACTCGAATCTCAAGTTAGCTGGTTCTCTCCGAAATACGATTTA 140399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689147930624