Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq340 152 2e-34 seq1100 78.8 3e-12 >seq340 Length=705485 Score = 152 bits (168), Expect = 2e-34 Identities = 339/508 (67%), Gaps = 62/508 (12%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || | ||||||||| ||||| |||| | ||||||||||| |||| Sbjct 260427 CTTTTGTTCCATTAGAGATTTCTCTTCTCATTGAGCTCATTTTAGGACACCTATATTATC 260368 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| || |||||||| ||| ||||||||||||| | ||| |||| | | | ||| Sbjct 260367 TTTTAT-AGGTGTGCCGCTCCAACCAAACTCCCCACTCGGCAACGTCAACTATCTAAATC 260309 Query 127 GGCCCGC-----GAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC--AGTTCC-GC 178 | || | | ||| ||| | |||| || || ||| | ||| | ||| || Sbjct 260308 GACCGGTTGGGGGCAGG-CCTCAGAGCCAAAA---GGAGGGTCA-GACTTTACTTCTAGC 260254 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA---AC- 234 || | | ||||||||| ||| ||| |||||| | ||| | |||| |||| || Sbjct 260253 TT-ACGAAATAAGTAAAATAACATTAAAAGTAGTGATGTTT-ATTTGCACCGATCAGACT 260196 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||| |||| ||| |||||||||||||||| | ||||| Sbjct 260195 GGCTCCGT-TTATCCTAAACCTCTCAAGTCATTTTATAAAGT------------------ 260155 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||| || |||| |||||||| || | ||| | | Sbjct 260154 -----------------------ATTTTGCTAAGCTTGTTCCCTTAGCGATTTTTTAGTT 260118 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||||||||||| | | ||| ||||| | ||||||| |||||||| ||||||||||||| Sbjct 260117 GGATAGTAGATAAGAATAGTAGGAATTTTGTTAATCTATTCATGCATGTCACTAATTAGA 260058 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||| ||| ||||||||| |||||||||| |||||||| | || |||||| | || Sbjct 260057 TGATGAGATATTTGGCTAGCTTAAGAGAGGCATAGTTATTTCCATTATTTACCTATGTTT 259998 Query 475 GGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||||||||| ||||| || Sbjct 259997 AATTGAATTTCTTCACTTTAACATTTAG 259970 >seq1100 Length=222598 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 87296 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 87237 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 87236 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 87191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634762485888