Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1100 205 3e-50 seq99 123 8e-26 seq594 95.1 4e-17 seq956 84.2 7e-14 seq3766 80.6 9e-13 seq386 80.6 9e-13 seq3566 75.2 4e-11 >seq1100 Length=222598 Score = 205 bits (226), Expect = 3e-50 Identities = 388/568 (68%), Gaps = 40/568 (7%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || ||||| |||||| || ||| | | |||| ||||| | | || | | Sbjct 87652 TCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAAT--C 87595 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 87594 AAC--GCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 87538 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGA-TCATGGG--CCAAGGTTAGATATC 177 ||||||||||||| ||| ||||| | ||| || | || || | |||||| ||| Sbjct 87537 ATAAACTACCCACCTCGCAGTGTCCGCCCCCCCGAATGATCGGTGCGGCGGTTAGGCATC 87478 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | | |||||||| ||||| | | || | | ||| | || | Sbjct 87477 CTTAGACGAAAGAGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC-- 87429 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 |||||||||||||||||| | | || || | | |||||||||| ||||| Sbjct 87428 ----TCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGT 87373 Query 298 CC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | ||||||||| |||| |||| | | ||||||| || | | |||||||| Sbjct 87372 GCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCA 87313 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 ||||| | || |||||||| ||| ||||||||| |||||||||||||||| ||||| Sbjct 87312 CCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTA 87253 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||| Sbjct 87252 TGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGC 87193 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536 ||| ||| || | ||||| | |||| ||||||||||| Sbjct 87192 TTCCATTCAAAGCTTATCACACTTC----------------TCCTTCCGACCTTCCAGCA 87149 Query 537 CCGGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||| ||||| | ||||| ||| Sbjct 87148 CCGGGCAGGTGTCAGACTCTATACATCG 87121 >seq99 Length=1347885 Score = 123 bits (136), Expect = 8e-26 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || | | |||||||||| || | || | |||||||| ||| |||| || Sbjct 1062501 GCATCTTCACGGAGAATTCAATTTCACCAGGTCCATGTTGGAGACAGCGGGGCAGTCATT 1062560 Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450 | |||||| ||||||||| ||| ||||||||||||||||| |||||||| |||| Sbjct 1062561 CCACCATTCATGCAGGTCGCTGGTTATGCGACAAGGAATTTCGCTCCCTTAGGACAGTTA 1062620 Query 451 TAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||| |||||||||| |||||||| ||| Sbjct 1062621 GAGTTACTGCCGCCGTTTATCGGGGCTTCCATT 1062653 >seq594 Length=596850 Score = 95.1 bits (104), Expect = 4e-17 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 394 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAG 453 || ||||||| ||||||||||||||| ||||| ||||||||||| |||||| ||||||| Sbjct 74038 CCTTTCGTGC-GGTCGGAACTTACCCAACAAG-AATTTCGCTACATTAGGACCGTTATAG 73981 Query 454 TTACCACCGCCGTTTACTGGGGCTTC 479 |||| | |||||| || |||||||| Sbjct 73980 TTACGGCTGCCGTTCACCGGGGCTTC 73955 >seq956 Length=248699 Score = 84.2 bits (92), Expect = 7e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 389 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGT 448 |||| || ||||||| ||| | |||| | | || |||||||||||||||||||| | || Sbjct 186717 TTACTCCTTTCGTGCGGGTTGAAACTCATCTGATAAGGAATTTCGCTACCTTAGAACCGT 186658 Query 449 TATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||| || || ||| |||| ||||| Sbjct 186657 TATAGTTACGACTGCTGTTCGCTGGAGCTTC 186627 >seq3766 Length=56865 Score = 80.6 bits (88), Expect = 9e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| | ||||| |||||||| | | ||| |||||| ||| |||| ||| Sbjct 42762 TCGTTACGCCTTTCATACAGGTTGGAACTTATCAAATAAGAAATTTCACTATCTTAAGAT 42703 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| | | |||| ||| |||||| Sbjct 42702 CGTTATAGTTACAGCTGTCGTTCACTAAGGCTTC 42669 >seq386 Length=628416 Score = 80.6 bits (88), Expect = 9e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||| ||| |||||| ||||||||||||| ||| || ||||| |||| |||| | Sbjct 609914 TCGTTATGCCTTTCGTGTGGGTCGGAACTTACTCGATAAAAAATTTTGCTATCTTAAAAC 609973 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||| |||| |||||||| | |||||||| Sbjct 609974 CGTTATAATTACAGCCGCCGTTCATCGGGGCTTC 610007 >seq3566 Length=49936 Score = 75.2 bits (82), Expect = 4e-11 Identities = 98/130 (75%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 |||||| || || | | ||||||||| | || |||||| || ||||||| ||||| Sbjct 9453 ATTTCATCGAGCTTCTCTTTGAGACAGT-GCCCAGATCGTTATACCTTTCGTGC-GGTCG 9396 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 || ||| |||||||||||| ||||||||||| ||||||||||| |||| ||| | Sbjct 9395 GA-CTT----GACAAGGAATTTTACTACCTTAGGACCGTTATAGTTACGGCCGCAGTTCA 9341 Query 470 CTGGGGCTTC 479 ||| |||| Sbjct 9340 TCGGGACTTC 9331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701944505856