Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1453 105 1e-20 seq9062 73.4 8e-11 seq1011 73.4 8e-11 >seq1453 Length=184460 Score = 105 bits (116), Expect = 1e-20 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | |||||| | ||||| || ||||| | | ||| |||| || Sbjct 183613 AAAAGAAGTTCATGATCCGTGGG-CCTTCTAGCTCCACGCGGCATTGCTTCGTCAGGCTT 183555 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 |||||||||| || ||| | ||||||||||||||||||||| ||| || |||||||| Sbjct 183554 TCGTCCATTGCGAAAAATTTCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCATGTCTCAG 183495 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| | ||||| || | |||||||||| Sbjct 183494 TTCTAGTGTGGCTGATCATCCTCTCAGA 183467 Score = 98.7 bits (108), Expect = 2e-18 Identities = 143/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||||||| || | | || | ||||| | | |||| | | | ||| |||| || | Sbjct 179301 AAAGAAGTTCACGACCTGTGGG-CCTTC-TACATCACACGGCATTGCTCCGTCAGGCTTT 179244 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || ||||| || || |||| |||| ||||||||||||||||| ||| |||||||||||| Sbjct 179243 CGCCCATT-ACGAAAATTCTCCACTACTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 179185 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||||| ||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 179184 CCCAATATGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGTAAGCTATTG 179125 Query 262 CCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 179124 CCTCACCAACTAGCTAAT 179107 >seq9062 Length=14617 Score = 73.4 bits (80), Expect = 8e-11 Identities = 87/118 (74%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 162 TCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCC 221 ||||||||||||||||||||||||||| || | ||||||| ||| ||| || | ||| Sbjct 10689 TCACTGCTGCCTCCCGTAGGAGTTTGGGCCATATCTCAGTCCCAGCATGGTTGATCATCC 10748 Query 222 TCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||||||| | | | ||| | || ||| || ||||| | || |||| ||||| Sbjct 10749 TCTCAGACCAGCCACTAATCATCACCTTGGTAAGCTATTACCTCCCCAACTAGCTAAT 10806 >seq1011 Length=254932 Score = 73.4 bits (80), Expect = 8e-11 Identities = 96/131 (73%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAA-CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||| ||||||| | ||| | |||||| ||| || | | ||||| || | || Sbjct 126006 AAAGAGCTTTACAAGCTGTATAGTCCTTCAC---TCATGCGATATTGCTGGATCGGGCTT 126062 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 || |||||| |||| ||||| |||| ||||| ||| | ||||| || ||||||||||| Sbjct 126063 TCACCCATTGTCCAAGATTCCCCACTACTGCCCCCCATGGGAGTCCGGGCCGTGTCTCAG 126122 Query 201 TTCCAATGTGG 211 | | | ||||| Sbjct 126123 TCCTAGTGTGG 126133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068514031872