Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq783 370 3e-100 seq10135 239 1e-60 seq1357 205 3e-50 seq227 168 2e-39 seq38 147 7e-33 seq1 134 4e-29 seq1198 132 1e-28 seq17363 113 1e-22 >seq783 Length=351393 Score = 370 bits (410), Expect = 3e-100 Identities = 396/516 (77%), Gaps = 24/516 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||||| ||| | | | |||| || | ||||||||| |||||||| Sbjct 346635 GTGCTCATTCCAATTACCAGAGTCGAGA-AGCCTAAAATTATTATTTATTGCCACTACCT 346577 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| |||| |||||||||||||||| ||||||||||||| ||| |||||||||| | || Sbjct 346576 CCCTATGTCAGGATTGGGTAATTTGCACGCCTGCTGCCTTTCTTAGATGTGGTAGACATT 346517 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 | |||||||||||||| ||||| || |||||||| | || | | | | ||||||||| Sbjct 346516 TTTCAGGCTCCCTCTCTAGAATCAAATCCTAATTCTCTGTCATCTATCAACACCATGGTA 346457 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| |||| ||||||||||||||| ||||| ||||||||||||| | ||||||| || Sbjct 346456 GGCTCCTATACTACCATCGAAAGTTAATAGGACAGAAATTTGAATCATGCATCGCC-GCA 346398 Query 241 CA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCC---CGAAGGGCGT 296 || || |||||| | | |||||| |||||| | | ||||| | || || ||| Sbjct 346397 CATGGGTTGTGCGATCCCTCGAGTTATCATGAATTATC--GGAGCACCTGCGGAGCTCGT 346340 Query 297 --TGGTTTTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTA 353 || ||||||||||||||| || |||||| | ||||| |||||| | | ||||| Sbjct 346339 GCTGTCATTTTATCTAATAAATGCATCCCTTCTGCAAGTCAGGGTTTATTATACTTATTA 346280 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 |||||||||||| | |||||||| ||| | |||| |||||||||| ||||||||| Sbjct 346279 GCTCTAGAATTATTATGGTTATCCGAATAG-CATGTACCATCAAATAAATTATAACTGAT 346221 Query 414 TTAATGAGCCATTCGCAGTTTCACTGT------------ATAGATTGCTTATACTTAGAC 461 ||||||||| || |||||||||| || ||| | | | ||||||| || Sbjct 346220 TTAATGAGCTATATGCAGTTTCACGGTTTGAATTAGTTCATACTTAGTTCATACTTACAC 346161 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497 |||||| |||||||||||||||||| ||||||||| Sbjct 346160 ATGCATAACTTAATCTTTGAGACAAGTATATGACTA 346125 >seq10135 Length=13342 Score = 239 bits (264), Expect = 1e-60 Identities = 163/182 (90%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||||| |||| | | |||||| ||| |||||||||||||||||| Sbjct 13141 GTGCTCATTCCAATTACCAGACTCGAG-GAGCCCAATATTGTTATTTATTGTCACTACCT 13083 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13082 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 13023 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||| Sbjct 13022 TCTCAGGCTCCCTCTCCGAAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 12963 Query 181 GG 182 || Sbjct 12962 GG 12961 >seq1357 Length=220353 Score = 205 bits (226), Expect = 3e-50 Identities = 255/345 (74%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || || ||||||||||| |||| | | | ||||| | |||||||| || |||||| Sbjct 166583 GTGCTTATTCCAATTACCAGACTCGAGA-AGCCCGATGCTGTTATTTATTATCTCTACCT 166525 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| |||| ||||||| ||||| | || ||| ||||||||||||||||||| | | ||| Sbjct 166524 CCCTATGTCAGGATTGGATAATTAGTGCACCTACTGCCTTCCTTGGATGTGGCAACTGTT 166465 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||| |||| || ||| ||||| || ||||||| | | ||| | |||||||||| Sbjct 166464 TCTCGAGCTCTCTTTCCAGAATCAAAGACTAATTCTTCATATCCCATCACTACCATGGTA 166405 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| |||| ||| || ||||||||||||| |||||||||||||| ||| | || Sbjct 166404 GGCTCCTATTCTATCACTGAAAGTTGATAGGATAGAAATTTGAATGATGCATTATCAGCA 166345 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGGAGCCCCGAAGGGC---GT 296 || |||| || ||| | || |||||| |||||||| | ||| | | || | | || Sbjct 166344 CATGGCCGTGTGATCCATTGAGTTATCATGAATCATCAAAGCATCAAGCAAAGACTATGT 166285 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTT 340 || ||||||||||||||| | || |||| |||| |||||| Sbjct 166284 TGACCTTTTATCTAATAAATGTATCCATTCCATAAGTTAGGGTTT 166240 >seq227 Length=903830 Score = 168 bits (186), Expect = 2e-39 Identities = 162/204 (79%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || | ||| | ||||||| | ||| | ||| |||||||||||| Sbjct 777287 TTTTATCTAATAAATGCATCTCTTTCAGAAGTCGAGATTTGTTGCACATATTAGCTCTAG 777346 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| ||||||||| |||| | | ||| |||||| |||| |||| |||| |||| | Sbjct 777347 AATTACTGCGGTTATCCGAGTAGCATG-TACCATCAAACAAACTATAATTGATGTAATAA 777405 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 | |||| || ||| || | | ||| || ||||| | |||| ||| ||||||||||| Sbjct 777406 GACATTTACAATTTTACAATCTGAATTAGTTCATACTCACACATACATAGCTTAATCTTT 777465 Query 480 GAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||| || Sbjct 777466 GAGACAAGCATATGACTACTGACA 777489 >seq38 Length=1915673 Score = 147 bits (162), Expect = 7e-33 Identities = 173/233 (74%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||| | |||| |||| ||| | ||| ||| | |||| ||||||||||||| Sbjct 1679718 GTACTCATTCTAGTTACTAGACTCAAGA-AGCTTGATATTATTATTCATTGTCACTACCT 1679660 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | ||||||| | |||||||||||||| | |||||||| || ||| |||||| ||| | || Sbjct 1679659 CTCCGTGTCAGAATTGGGTAATTTGCACACCTGCTGCTTTTCTTAGATGTGATAGTCATT 1679600 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 | | || | ||||| ||||||| |||||||| | | | | | || |||| || Sbjct 1679599 TTTAAGATTTTCTCTCTAAAATCGAATCCTAATTCTCTATCATCTATCACTATCATGATA 1679540 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 | ||||||| || ||||||||||||| | ||||||||| || |||| Sbjct 1679539 GATTTTTATCCTATTATTGAAAGTTGATAGGATACAAATTTGAACGATGCATC 1679487 >seq1 Length=4413431 Score = 134 bits (148), Expect = 4e-29 Identities = 137/176 (78%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCC-CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 ||||||||||||| |||| | | |||| | ||||||||||||| ||| | |||||||| Sbjct 3943826 TATTTATTGTCACCACCTTTCTCATGTCAAGGTTGGGTAATTTGCACGCATTCTGCCTTC 3943885 Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 |||||||||| ||||| |||||| |||| || || ||| | |||||| ||||| | || Sbjct 3943886 CTTGGATGTGATAGCCATTTCTCGGGCTTTCTTTCTGGAGTTGAACCCCAATTCTCTGTC 3943945 Query 162 ACCCGTTGATACCA-TGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 ||| | || | |||||| | |||||||| ||| |||||||||| || |||| Sbjct 3943946 ACCTATCACCACTATTGGTAGAACTCTATCCTATCATGGAAAGTTGATGGGTCAGA 3944001 >seq1198 Length=250080 Score = 132 bits (146), Expect = 1e-28 Identities = 120/147 (82%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||||||||||||| |||||| | ||||||| |||| | ||| ||||||||||| Sbjct 105153 TTTTATCTAATAAATACATCCCTTCTGGAAGTCGGAGTTTGTTGCACATATTAGCTCTAT 105094 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 ||||| | |||||| | |||| | ||| ||||||||| | |||||||||||||| | Sbjct 105093 AATTATTATGGTTATTCGAGTAGCACA-TACCATCAAATAA-CTATAACTGATTTAATAA 105036 Query 421 GCCATTCGCAGTTTCACTGTATAGATT 447 |||||| ||||||||| ||| | |||| Sbjct 105035 GCCATTTGCAGTTTCATTGTTTGGATT 105009 >seq17363 Length=6010 Score = 113 bits (124), Expect = 1e-22 Identities = 86/99 (87%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 133 GTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAA-TTGAATGATGCATCGCCA 75 Query 238 GCTCA-AGGCCATGCGATTCGTTAAGTTATTATGAATCA 275 || || |||| |||||| | || |||||| |||||||| Sbjct 74 GCACATGGGCCGTGCGATCCATTGAGTTATCATGAATCA 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509995877376