Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2728 215 6e-51 seq518 114 1e-20 seq2163 104 3e-17 seq85 100 3e-16 seq639 95.1 1e-14 seq4860 89.7 6e-13 seq2774 84.2 2e-11 seq27 84.2 2e-11 seq172 82.4 8e-11 >seq2728 Length=129770 Score = 215 bits (238), Expect = 6e-51 Identities = 247/332 (74%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 162085 TTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAA 162144 || || | |||| |||| | |||||||| |||| || || ||||| || | | | || Sbjct 96478 TTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAA 96537 Query 162145 GATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTAC 162204 |||||||| |||||||| ||| |||||| || | || |||| || |||||||| Sbjct 96538 GATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTAT 96597 Query 162205 TCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAG 162264 || ||||| ||||| ||||| || ||||| || ||||| || |||||||| ||||| Sbjct 96598 TCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAA 96657 Query 162265 CGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATC 162324 ||||||| |||||||||||||| || || || || | | | | |||| ||| || | Sbjct 96658 TGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTT 96717 Query 162325 GGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGT 162384 | | | || || ||||| || || |||||||| ||||| || || || || |||||| Sbjct 96718 CGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGT 96777 Query 162385 GCAGCGGAGGATCCTGAATTTGAAACCTTCTA 162416 |||||||| |||||||||||||| || ||||| Sbjct 96778 GCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 114 bits (126), Expect = 1e-20 Identities = 401/622 (64%), Gaps = 32/622 (5%) Strand=Plus/Minus Query 160161 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTG 160220 |||| || |||| || ||||| ||||||||| || |||| || || |||||| ||| Sbjct 409758 GTCTGGGCATGCATCTTTGGATTGTTGTTGCATATTCAACTCCTGTTGCAGCTGCTACTG 409699 Query 160221 CTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160280 || | ||| | |||||| | ||||| || |||||| ||| |||||| Sbjct 409698 CTAT-TTCTTGACCTACCCTATTGGTCAAGGAAGTTTCTCTGAT---ATGCCTT------ 409649 Query 160281 TCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160340 | || |||| ||||| || || |||| ||||| |||||| Sbjct 409648 ------GAAC----AACT--------GTATTTTAAATGGATTACAACATCCTCGTGCATC 409607 Query 160341 CGTTCCACATGCTCGGTGTTGCTGGGGTAT-TCGGTGGATCTCTGTTCTCTGCTATGCAT 160399 | | |||||| | |||| || || |||| | | ||| | ||| |||||| ||| Sbjct 409606 CATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT-TATTCAGTGCTATCCAT 409548 Query 160400 GGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTAT 160459 || || ||| || | || | | ||| || || || ||| |||||| || | Sbjct 409547 GGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAAATGAGTCTACTAATGAA 409488 Query 160460 GGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTC 160519 ||||| | ||| |||||| ||| || ||| | || || || | || ||||| || || Sbjct 409487 GGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAGGTGCCCATGGTTATTTG 409428 Query 160520 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTG-CACTTCTTCCT 160578 | |||| |||| |||||||| || ||||| || | || | || || || | Sbjct 409427 GCAGATTTG-TCTTACAATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTT 409369 Query 160579 CGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATT 160638 |||||||||| || || || |||| ||| ||||| | || | ||| ||| | || Sbjct 409368 GGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACGTATCAGTACTATGACTTT 409309 Query 160639 CAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAA 160698 ||| || ||||||||||| | |||||| | | | ||||| || || | ||| | | Sbjct 409308 CAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTATTAC 409249 Query 160699 CACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAA 160758 || | | | || | | || | | | | | |||||||| ||| | || |||| Sbjct 409248 CATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATGTAA 409189 Query 160759 CGCTCACAACTTCCCTCTCGAC 160780 ||||||||||||||||| ||| Sbjct 409188 TGCTCACAACTTCCCTCTAGAC 409167 >seq2163 Length=162151 Score = 104 bits (114), Expect = 3e-17 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||| ||||||| ||||||||||| || | || ||||| ||||||| | ||| Sbjct 135417 GACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTTCCTTATGCTTATTTCGCT 135358 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| ||| || | ||||| | || ||||||||||||||| | || Sbjct 135357 TTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 135298 Query 161665 AGTTCCTATCTTG-AGGGTGCAAATTTTCTT-ACAGCGGCAGTTAGCACTCCAGC 161717 ||||||||| | | ||| ||||| |||||| || || | |||| |||||| || Sbjct 135297 AGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGTAGTTTCCACTCCTGC 135245 >seq85 Length=1476802 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368 ||||||| |||||||| |||||||||||||| || |||||| | ||||| ||||| || Sbjct 645544 ATTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 645603 Query 160369 ATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTAC 160413 |||||| || || || ||| |||||||||||| || |||| || Sbjct 645604 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 >seq639 Length=439984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 162390 GGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCG 162449 ||| |||||| ||||||| || ||||||| ||| ||||| ||||| || |||| | |||| Sbjct 425126 GGAAGATCCTAAATTTGAGACTTTCTACATCAAAAATATTCTCTTAAACGAAGATATTCG 425067 Query 162450 TGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCT 162509 ||| ||| ||| | ||||| || ||||| ||| || ||||||||||| | ||||| Sbjct 425066 TGCTTGGATGGTGGCTCAGGATCAGCCTCATGA-AACCTTATATTCCCTGAGAAGGTTCT 425008 Query 162510 GCCTAGAGGTAACGCACTGTGAATGG 162535 || | || || || || | ||||| Sbjct 425007 ACCCTGCGGAAATGCTCT-TTAATGG 424983 >seq4860 Length=43173 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 162333 TGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGA 162392 ||| || ||||| || || | |||||| ||||| | | || || || ||||||||| | Sbjct 9556 TGGCCTGGCTCTGAACCTCCATGCTTATGACTTCATTTTCCAAGAAATCCGTGCAGCGAA 9497 Query 162393 GGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCT 162431 |||||||||||||| || ||||||||||| |||||||| Sbjct 9496 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCT 9458 >seq2774 Length=74964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 162361 GACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACC 162420 ||||| | | ||| | ||| ||||| ||| |||| ||||||||| || ||||| ||| Sbjct 26800 GACTTCATTTATCAAAAAATTTGTGCAATGGAAGATCTTGAATTTGAGACTTTCTATACC 26859 Query 162421 AAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCAT 162480 || ||||||||||| || |||||| ||| ||| ||| ||| | | ||||| ||| Sbjct 26860 AAAAATATCCTCTTAAACGAAGGTATTCATGCTTGGATGGTGGCTCCGAAGCAACCTCAT 26919 Query 162481 GAGAACTTTGTATTCC 162496 || || || |||||| Sbjct 26920 GAAAATCTTATATTCC 26935 >seq27 Length=2012675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 160460 GGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTC 160519 ||||||| ||||||||||||||||| ||||| || ||||| || || ||| | || || Sbjct 1262127 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCAT-GTTATTTT 1262185 Query 160520 GGTCGTTTGATCTTCCAATATGC 160542 || || ||||||||||||||||| Sbjct 1262186 GGCCGATTGATCTTCCAATATGC 1262208 >seq172 Length=1158115 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 160277 GGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATG 160336 || || | || |||||| ||||| || ||||||||||||||||||||| | ||||||| Sbjct 764633 GGAATATTTGATACTTTCAACTAGAT---TGTATTCCAAGCAGAACACAACACCCTTATG 764577 Query 160337 CATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATG 160396 ||| || |||||| | | ||| || | || |||| || || || || ||||||| Sbjct 764576 AATCAATTTCACATGTTGGATGTAACTAGTGTTTTCGATGACTCGCTATTTAGTGCTATG 764517 Query 160397 CATG 160400 |||| Sbjct 764516 CATG 764513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551191592296800