Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq2728 201 1e-46 seq518 132 6e-26 seq916 111 2e-19 seq4860 93.3 5e-14 >seq2728 Length=129770 Score = 201 bits (222), Expect = 1e-46 Identities = 237/318 (75%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 190578 GCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACG 190637 || || ||||||| || ||||| |||||||| | ||||||||||| ||||| || Sbjct 96499 GCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACA 96558 Query 190638 TTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGT 190697 || || || || | || |||| |||||||| ||||| ||||||||||| ||||| Sbjct 96559 TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCGC 96618 Query 190698 TTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATG 190757 || ||||| ||||||||||| ||||| || ||||| | ||||| |||||||||||| Sbjct 96619 TTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATG 96678 Query 190758 CTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTC-CATCGGTATTATTGGTCTTGCTCT 190816 || ||||| || || | | | | |||| | | | |||| | | || || ||||| Sbjct 96679 CTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGG-GTAGTCGGCCTGGCTCT 96737 Query 190817 CAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTT 190876 ||||| |||||||||||||| || |||||||| || | ||||| |||||||| || || Sbjct 96738 GAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGATCCTGAATT 96797 Query 190877 CGAGACTTTTTACACAAA 190894 |||||||| || |||| Sbjct 96798 TGAGACTTTCTAATCAAA 96815 >seq518 Length=568097 Score = 132 bits (146), Expect = 6e-26 Identities = 309/460 (67%), Gaps = 6/460 (1%) Strand=Plus/Minus Query 189371 ACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCT-TCGGTGGTTCA 189429 |||||||||| |||| || | |||||| |||| | || ||||| | | | ||| Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 189430 CTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAA 189489 | ||| || || |||||||| | | |||| | | || | ||||||||| || Sbjct 409564 -TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 409506 Query 189490 ACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTT 189549 | ||||| || | ||||| | || | |||| || ||||| | || || || Sbjct 409505 AATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 189550 GCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGT 189609 | ||| ||||| ||||| || | || |||| |||||||| |||||||| || || Sbjct 409445 GGTGCCCATGGTTATTT-GGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGT 409387 Query 189610 TCACTTCAC--TTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCG 189667 || ||| || || || | ||||| |||| | || ||||||| ||| || || | Sbjct 409386 TC-CTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTAC 409328 Query 189668 GCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATG 189727 | |||| || ||| | |||||||| ||||| ||||| | ||| ||| | | | | || Sbjct 409327 GTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACA 409268 Query 189728 GTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGG 189787 ||| ||| |||| | | || | | | || | |||| | || | ||| ||||| Sbjct 409267 ATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGG 409208 Query 189788 AAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 |||| ||| |||| |||| ||||||||||||||||| || Sbjct 409207 AAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGA 409168 >seq916 Length=298367 Score = 111 bits (122), Expect = 2e-19 Identities = 192/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 190275 TGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTT 190334 ||||||||||| || |||||||| | |||| |||| || || | | ||| | || Sbjct 270196 TGGGCTTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTC 270255 Query 190335 GAACTGGCACGTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATC 190394 |||| || | | | | | | ||| ||||| || || |||| || ||| || Sbjct 270256 GAACCTGCTTGATTTGTGCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAATT 270315 Query 190395 GCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCG 190454 ||| |||| ||| || || |||| || || ||||||||||| ||||||||||| || Sbjct 270316 GCTATTTT-GTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCA 270374 Query 190455 CCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAAC 190514 || ||||| ||||| || || | ||| |||||||||| || || || ||||| Sbjct 270375 CC-----CAGGTGTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCATAAT 270429 Query 190515 TGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGG 190552 |||| | ||||||| || || ||| || ||||| || Sbjct 270430 TGGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGG 270467 >seq4860 Length=43173 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 190805 TGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGA 190864 ||| || ||||| ||||| | |||||||||||| | | |||||| ||| | ||||| | Sbjct 9556 TGGCCTGGCTCTGAACCTCCATGCTTATGACTTCATTTTCCAAGAAATCCGTGCAGCGAA 9497 Query 190865 AGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTT 190905 |||||| || || |||||||| ||||| |||||||| |||| Sbjct 9496 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTTT 9456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633867931944000