Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq2728 251 8e-62 seq518 150 2e-31 seq916 122 1e-22 seq291 111 2e-19 seq71 109 6e-19 seq85 95.1 1e-14 >seq2728 Length=129770 Score = 251 bits (278), Expect = 8e-62 Identities = 250/324 (77%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 164465 TGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGA 164524 |||||| || || ||||||||||||||||||||||| |||||||| || ||||||||||| Sbjct 96486 TGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGA 96545 Query 164525 ACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGT 164584 ||||||| ||| || || | || ||||||| ||||||||||| || ||||| Sbjct 96546 CGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGT 96605 Query 164585 CACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTT 164644 |||||| |||||||| ||||| || || ||||| ||||||| |||||| ||||||| Sbjct 96606 CACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTT 96665 Query 164645 GCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCAT 164704 || ||||||||||| ||||| || || | | | |||| ||| || || | | | Sbjct 96666 ACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGT 96725 Query 164705 CGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGA 164764 ||| || || || || || ||||||||||| || || || || || ||| | ||||| || Sbjct 96726 CGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGA 96785 Query 164765 GGATCCTGAATTTGAGACGTTCTA 164788 ||||||||||||||||| ||||| Sbjct 96786 AGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 150 bits (166), Expect = 2e-31 Identities = 312/459 (68%), Gaps = 4/459 (1%) Strand=Plus/Minus Query 161092 ACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCT-TCGGTGGTTCT 161150 |||||||||| |||| || | ||||||||||||| || ||||| | | | |||| Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 161151 CTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAG 161210 | ||| || || |||||||| ||| || | | | || | ||||||||| | Sbjct 409564 -TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 409506 Query 161211 AACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTC 161270 || ||||| || | ||||| | || |||||| || || || | || || || Sbjct 409505 AATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 161271 GCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGT 161330 | ||| |||||||| || || | | |||| ||||| ||| |||||||| || || Sbjct 409445 GGTGCCCATGGTTATTT-GGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGT 409387 Query 161331 TCGTTG-CACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGG 161389 || || || || || | || || |||| || || ||||||| ||| ||||| | | Sbjct 409386 TCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACG 409327 Query 161390 TGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGG 161449 | || || ||| | |||||||| || || ||||| | |||||| | | | || Sbjct 409326 TATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAA 409267 Query 161450 TCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGA 161509 |||||| | || | | || || | |||| | | |||| || ||| ||| |||||| Sbjct 409266 TCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGA 409207 Query 161510 AGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGA 161548 ||||||| | || |||||||||||||||||||||| || Sbjct 409206 AGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGA 409168 >seq916 Length=298367 Score = 122 bits (134), Expect = 1e-22 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 164265 TACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTAC 164324 || ||||| || || |||| || ||| |||||| | ||||| || ||| | || || Sbjct 270286 TATAATGCAATCGCATTCTTTGTTCCAATTGCTAT-TTTGTTTCTGTATTCTTCATTTAT 270344 Query 164325 CCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGA 164384 || || || |||||||||||||||||||| ||| || || || || || || || Sbjct 270345 CCACTGGGTCAATCTAGTTGGTTCTTTGCACCCAGGT-----GTTGCAGCTATATTTTGA 270399 Query 164385 TTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGT 164444 ||| || | ||| ||||||| || ||||| |||| | ||||| || ||| ||| || Sbjct 270400 TTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGGA 270459 Query 164445 GTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTA 164493 ||||| || | | ||| |||||| || || ||||||||||||||| Sbjct 270460 GTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGCTA 270508 >seq291 Length=752601 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 164335 AATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGT 164394 ||||| ||||||||||||| ||| ||| || || || || || ||||| || | | Sbjct 473238 AATCTGGTTGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCT 473179 Query 164395 TCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCA 164454 || ||||||| || ||||| |||| | ||||| || ||||||||||| ||| || Sbjct 473178 TCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGGAG 473119 Query 164455 TCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGA 164500 | | |||| | |||| || || |||||||||||||||||| |||| Sbjct 473118 TATTAGGTGCTACTCTGCTATGCGCTATTCATGGTGCTACCATAGA 473073 >seq71 Length=1438040 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 164383 GATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGG 164442 ||||| |||||||| |||||| || | ||| |||||| | ||| | || ||||| |||| Sbjct 1356526 GATTCATCTTGTTCTTCCAAGAGTTTCGTAATTGGACATTGAACTCATTTCATATAATGG 1356585 Query 164443 GTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGA 164502 | ||| || | | || | |||||| || || ||||||||||||||| |||||| | Sbjct 1356586 GGGTTATCGGAGTATTAGGCGCTGCTCTGCTATGCACTATTCATGGTGCTATCGTAGAAA 1356645 Query 164503 ATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTC 164540 ||| ||| || ||||||||||| ||||||| ||| Sbjct 1356646 ATATTTTATTCGAAGATGGTGACGGTGCAAATACATTC 1356683 >seq85 Length=1476802 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 161088 GAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGT 161147 |||||||||||||| ||||| || || |||||||||||||| |||||||| ||||| || Sbjct 645554 GAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGC 645613 Query 161148 TCTCTGTTCTCCGCAATGCATGGTTCACTGGTTAC 161182 || || ||| || ||||||||||| |||| || Sbjct 645614 TCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559140932750400