Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq103405 132 5e-29 seq174080 100 3e-19 seq136135 100 3e-19 seq312482 96.9 4e-18 seq482966 95.1 1e-17 seq351992 95.1 1e-17 seq152360 84.2 2e-14 seq439455 77.0 3e-12 >seq103405 Length=3107 Score = 132 bits (146), Expect = 5e-29 Identities = 149/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| ||||| || || || Sbjct 879 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCAATGCAGTCCAAC 820 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 |||| | ||||| | || |||| || | || ||| ||| || ||||| || Sbjct 819 CGCGTTGCTTCAACTTAACAGAAATTTGGGGACCTTAGCTGTTGGTCTGGGTTCTTTCCC 760 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180 |||||| || |||||||| |||||||||||||||| || ||| | | || |||||| Sbjct 759 TCTCGGACATGGACCTTAGCACCCATGCCCTCACT-GCCGACCATCATTTATTAGCATTC 701 Query 181 GGAGTTTGGCAGGACTTG 198 |||||||| ||||| ||| Sbjct 700 GGAGTTTGTCAGGAATTG 683 >seq174080 Length=405 Score = 100 bits (110), Expect = 3e-19 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 17 TGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGACTTCGTTAGATTGACTT 76 |||||||||||| |||||||||||| |||||| || | ||| ||||||| | |||| Sbjct 405 TGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAGCCGGACCTCGTTAGTTCAACTT 346 Query 77 ATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCCTCTCGGGCACGGACCT 136 | | |||| || | || |||| ||| || ||||| |||||||| | |||||| Sbjct 345 AATAGTAATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCGGCCCTGGACCT 286 Query 137 TACCACCCATGCCCTCACTCGCGCG-GCATGACTGATGCGCATTCGGAGTTTGGCAGGAC 195 || |||||| ||||||| ||| || ||| | |||||||||||||| | ||| Sbjct 285 TAGCACCCAGAGCCTCACTGCAGCGTATATTACTCA---GCATTCGGAGTTTGTCTGGAT 229 Query 196 TTG 198 ||| Sbjct 228 TTG 226 >seq136135 Length=305 Score = 100 bits (110), Expect = 3e-19 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 17 TGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGACTTCGTTAGATTGACTT 76 |||||||||||| |||||||||||| |||||| || | ||| ||||||| | |||| Sbjct 1 TGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAGCCGGACCTCGTTAGTTCAACTT 60 Query 77 ATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCCTCTCGGGCACGGACCT 136 | | |||| || | || |||| ||| || ||||| |||||||| || |||||| Sbjct 61 AATGGTAATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCGGCCATGGACCT 120 Query 137 TACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTCGGAGTTTGGCAGGACT 196 || ||||||| |||||||| || | || | | ||||||||||||| | ||| | Sbjct 121 TAGCACCCATAGCCTCACTCCAGC-GTAT-ATTATCAAGCATTCGGAGTTTATCTGGATT 178 Query 197 TG 198 || Sbjct 179 TG 180 >seq312482 Length=1174 Score = 96.9 bits (106), Expect = 4e-18 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||| || |||||||||| || |||||||| |||||| || || ||| Sbjct 711 GCACTCTTTAAATGTATAGCTGCTTCCAAGCTAACATCCTGGCTGTCTCTGCAGTCGGAC 770 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 | |||| | ||||| | | |||| || | || |||| || || || ||| || Sbjct 771 CCCCTTAGTTCAACTTAGCATATATTTTGGGACCTTAGCTGATGCTCTGGGTTGTTCCCC 830 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGC-ATT 179 |||||| | |||||||| ||||| ||||||||| || | || | |||| | ||| Sbjct 831 TCTCGGACTGGGACCTTAGCACCCCAGCCCTCACTGCCGTGT-ATATC--ATGCCCCATT 887 Query 180 CGGAGTTTGGCAGGACTTG 198 ||||||||| ||| | ||| Sbjct 888 CGGAGTTTGTCAGAATTTG 906 >seq482966 Length=1715 Score = 95.1 bits (104), Expect = 1e-17 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| | ||||||||||||||| |||||| |||| |||||| | || | ||| Sbjct 1616 GCACTCTTTAAAGGAATGGCTGCTTCCAAGCCAACCTCCTGGCTGTCTCAGCAGCCGGAC 1557 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 | || | | ||||| | ||| || || | || ||| ||| || || ||| || Sbjct 1556 CGCCTTTGTTCAACTTAGCACACACTTGGGGACCTTAGATGATGGTCTGGGTTGTTCCCC 1497 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACT 155 |||||| | |||||||| |||||| ||||||||| Sbjct 1496 TCTCGGACTTGGACCTTAGCACCCAAGCCCTCACT 1462 >seq351992 Length=230 Score = 95.1 bits (104), Expect = 1e-17 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 16 ATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGACTTCGTTAGATTGACT 75 ||||||||||||| |||||||||||| |||||| ||| | ||| ||||||| | ||| Sbjct 1 ATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGGGCAACCGGACCTCGTTAGTTCAACT 60 Query 76 TATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCCTCTCGGGCACGGACC 135 || |||||| || | || |||| ||| || ||||| |||||||| | ||||| Sbjct 61 TAGACTACATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCGGCCTTGGACC 120 Query 136 TTACCACCCA 145 ||| |||||| Sbjct 121 TTAGCACCCA 130 >seq152360 Length=243 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 96 TATCTGAGAGTCCGGATTCTTCTCCTCTCGGGCACGGACCTTACCACCCATGCCCTCACT 155 || |||| ||| || ||||| |||||||| || |||||||| |||||||||||||||| Sbjct 243 TAGCTGATGGTCTGGGTTCTTTCCCTCTCGGACATGGACCTTAGCACCCATGCCCTCACT 184 Query 156 CGCGCGGCATGACTGATGCGCATTCGGAGTTTGGCAGGACTTG 198 || | | || || || |||||||||||||| ||||| ||| Sbjct 183 -GCTCAGTATATCTTAT-AGCATTCGGAGTTTGTCAGGATTTG 143 >seq439455 Length=933 Score = 77.0 bits (84), Expect = 3e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| |||||| || | ||| Sbjct 364 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAGCCGGAC 305 Query 61 TTCGTTAGATTGACTTA 77 ||||||| | ||||| Sbjct 304 CTCGTTAGTTCAACTTA 288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534862534584