Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01000026.1
Length=199
Score E
Sequences producing significant alignments: (Bits) Value
seq103405 132 5e-29
seq174080 100 3e-19
seq136135 100 3e-19
seq312482 96.9 4e-18
seq482966 95.1 1e-17
seq351992 95.1 1e-17
seq152360 84.2 2e-14
seq439455 77.0 3e-12
>seq103405
Length=3107
Score = 132 bits (146), Expect = 5e-29
Identities = 149/198 (75%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60
||| |||||| ||||||||||||||||| |||||||||||| ||||| || || ||
Sbjct 879 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCAATGCAGTCCAAC 820
Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120
|||| | ||||| | || |||| || | || ||| ||| || ||||| ||
Sbjct 819 CGCGTTGCTTCAACTTAACAGAAATTTGGGGACCTTAGCTGTTGGTCTGGGTTCTTTCCC 760
Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180
|||||| || |||||||| |||||||||||||||| || ||| | | || ||||||
Sbjct 759 TCTCGGACATGGACCTTAGCACCCATGCCCTCACT-GCCGACCATCATTTATTAGCATTC 701
Query 181 GGAGTTTGGCAGGACTTG 198
|||||||| ||||| |||
Sbjct 700 GGAGTTTGTCAGGAATTG 683
>seq174080
Length=405
Score = 100 bits (110), Expect = 3e-19
Identities = 133/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 17 TGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGACTTCGTTAGATTGACTT 76
|||||||||||| |||||||||||| |||||| || | ||| ||||||| | ||||
Sbjct 405 TGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAGCCGGACCTCGTTAGTTCAACTT 346
Query 77 ATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCCTCTCGGGCACGGACCT 136
| | |||| || | || |||| ||| || ||||| |||||||| | ||||||
Sbjct 345 AATAGTAATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCGGCCCTGGACCT 286
Query 137 TACCACCCATGCCCTCACTCGCGCG-GCATGACTGATGCGCATTCGGAGTTTGGCAGGAC 195
|| |||||| ||||||| ||| || ||| | |||||||||||||| | |||
Sbjct 285 TAGCACCCAGAGCCTCACTGCAGCGTATATTACTCA---GCATTCGGAGTTTGTCTGGAT 229
Query 196 TTG 198
|||
Sbjct 228 TTG 226
>seq136135
Length=305
Score = 100 bits (110), Expect = 3e-19
Identities = 133/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 17 TGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGACTTCGTTAGATTGACTT 76
|||||||||||| |||||||||||| |||||| || | ||| ||||||| | ||||
Sbjct 1 TGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAGCCGGACCTCGTTAGTTCAACTT 60
Query 77 ATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCCTCTCGGGCACGGACCT 136
| | |||| || | || |||| ||| || ||||| |||||||| || ||||||
Sbjct 61 AATGGTAATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCGGCCATGGACCT 120
Query 137 TACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTCGGAGTTTGGCAGGACT 196
|| ||||||| |||||||| || | || | | ||||||||||||| | ||| |
Sbjct 121 TAGCACCCATAGCCTCACTCCAGC-GTAT-ATTATCAAGCATTCGGAGTTTATCTGGATT 178
Query 197 TG 198
||
Sbjct 179 TG 180
>seq312482
Length=1174
Score = 96.9 bits (106), Expect = 4e-18
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60
||| |||||| ||| || |||||||||| || |||||||| |||||| || || |||
Sbjct 711 GCACTCTTTAAATGTATAGCTGCTTCCAAGCTAACATCCTGGCTGTCTCTGCAGTCGGAC 770
Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120
| |||| | ||||| | | |||| || | || |||| || || || ||| ||
Sbjct 771 CCCCTTAGTTCAACTTAGCATATATTTTGGGACCTTAGCTGATGCTCTGGGTTGTTCCCC 830
Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGC-ATT 179
|||||| | |||||||| ||||| ||||||||| || | || | |||| | |||
Sbjct 831 TCTCGGACTGGGACCTTAGCACCCCAGCCCTCACTGCCGTGT-ATATC--ATGCCCCATT 887
Query 180 CGGAGTTTGGCAGGACTTG 198
||||||||| ||| | |||
Sbjct 888 CGGAGTTTGTCAGAATTTG 906
>seq482966
Length=1715
Score = 95.1 bits (104), Expect = 1e-17
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60
||| |||||| | ||||||||||||||| |||||| |||| |||||| | || | |||
Sbjct 1616 GCACTCTTTAAAGGAATGGCTGCTTCCAAGCCAACCTCCTGGCTGTCTCAGCAGCCGGAC 1557
Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120
| || | | ||||| | ||| || || | || ||| ||| || || ||| ||
Sbjct 1556 CGCCTTTGTTCAACTTAGCACACACTTGGGGACCTTAGATGATGGTCTGGGTTGTTCCCC 1497
Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACT 155
|||||| | |||||||| |||||| |||||||||
Sbjct 1496 TCTCGGACTTGGACCTTAGCACCCAAGCCCTCACT 1462
>seq351992
Length=230
Score = 95.1 bits (104), Expect = 1e-17
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 16 ATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGACTTCGTTAGATTGACT 75
||||||||||||| |||||||||||| |||||| ||| | ||| ||||||| | |||
Sbjct 1 ATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGGGCAACCGGACCTCGTTAGTTCAACT 60
Query 76 TATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCCTCTCGGGCACGGACC 135
|| |||||| || | || |||| ||| || ||||| |||||||| | |||||
Sbjct 61 TAGACTACATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCGGCCTTGGACC 120
Query 136 TTACCACCCA 145
||| ||||||
Sbjct 121 TTAGCACCCA 130
>seq152360
Length=243
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/103 (80%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 96 TATCTGAGAGTCCGGATTCTTCTCCTCTCGGGCACGGACCTTACCACCCATGCCCTCACT 155
|| |||| ||| || ||||| |||||||| || |||||||| ||||||||||||||||
Sbjct 243 TAGCTGATGGTCTGGGTTCTTTCCCTCTCGGACATGGACCTTAGCACCCATGCCCTCACT 184
Query 156 CGCGCGGCATGACTGATGCGCATTCGGAGTTTGGCAGGACTTG 198
|| | | || || || |||||||||||||| ||||| |||
Sbjct 183 -GCTCAGTATATCTTAT-AGCATTCGGAGTTTGTCAGGATTTG 143
>seq439455
Length=933
Score = 77.0 bits (84), Expect = 3e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60
||| |||||| ||||||||||||||||| |||||||||||| |||||| || | |||
Sbjct 364 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAGCCGGAC 305
Query 61 TTCGTTAGATTGACTTA 77
||||||| | |||||
Sbjct 304 CTCGTTAGTTCAACTTA 288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534862534584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |