Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq439455 147 4e-33 seq233144 136 8e-30 seq137681 134 3e-29 seq306734 127 4e-27 seq184585 114 2e-23 seq234652 96.9 7e-18 seq479515 89.7 1e-15 seq103405 82.4 1e-13 seq165751 78.8 2e-12 >seq439455 Length=933 Score = 147 bits (162), Expect = 4e-33 Identities = 225/314 (72%), Gaps = 5/314 (2%) Strand=Plus/Minus Query 18 TTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACGTTC 77 ||||||| |||||| || ||||| ||||| ||||||| || |||||||| | | Sbjct 853 TTAGCGGTTTTTCTTGGAAGTCTGATTACCTGCACTATCCACTTA-CCCGAAGG-CTCGC 796 Query 78 CATACTGTCAA-TCTCGACTCTTTCCGTGGATTTGCCTGCGGAAATCAACGTCTACACTC 136 |||| ||| |||| | | | |||||||||| | ||| | | ||||| | Sbjct 795 GGTACTATCAGCTCTCAGCAGCTCTGGCGGATTTGCCTACCAAAA-CTATACCTACAGCC 737 Query 137 TTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCTC 196 |||||| |||||||||||| ||||| ||||||| || ||||||||| || | | Sbjct 736 TTTAACGATCTATTCCGTCAGATCGCGGCAGTGTCACTACTCCGTCCCCACATCGCAGTT 677 Query 197 AAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTT 256 | | |||| | |||| ||| | || | |||||| | || ||||| | |||| Sbjct 676 ATAAAAAGTACGGAAATATTAATCCGTTAT-CCATCGAATACCCCTTTCGGGTTCTCCTT 618 Query 257 ATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAG 316 | | ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | | Sbjct 617 AGGCCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTATCCTTTCGGTGGG 558 Query 317 GGGGTTTCCCACCC 330 ||||||| | ||| Sbjct 557 CGGGTTTCTCGCCC 544 >seq233144 Length=326 Score = 136 bits (150), Expect = 8e-30 Identities = 148/195 (76%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||||||| |||||||||||| |||| ||||||| || |||| | | || | | Sbjct 295 CTTTAACGTTCTATTCCGTCAGAACGCGGATGTGTCACTACTCCGTCACTGCATCGCAGT 236 Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCT 255 || | |||| |||||| ||||| || | ||||||| || || |||| | | ||| Sbjct 235 CATAAAAAGTACTGGAATATTAACCAGTTGT-CCATCGGGATCTCCACTCGGATTACCCT 177 Query 256 TATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGA 315 || | ||||||| |||||||||||||||||| ||||||||||||||| ||||||||| | Sbjct 176 TAGGCCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTGGTCTTTCGGTGG 117 Query 316 GGGGGTTTCCCACCC 330 | ||||||| | ||| Sbjct 116 GCGGGTTTCTCTCCC 102 >seq137681 Length=499 Score = 134 bits (148), Expect = 3e-29 Identities = 143/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 146 CTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCTCAAATGTAGT 205 |||||||||||| ||||| ||||||| || |||| |||| || | | | ||| Sbjct 235 CTATTCCGTCAGTTCGCGGCAGTGTCACTACTCCGTCACCACATCGCAGTTATGAAGAGT 176 Query 206 AACGGAATACTAACCGTTTCTGCCATCGGTCT-CGCCGTTCGGCTGAACCTTATGACCCG 264 | |||||| ||||| || | ||||||| | | || ||||| || ||||| | |||| Sbjct 175 ACTGGAATATTAACCAGTTGT-CCATCGGCTTGCCCCTTTCGGGTGCGCCTTAGGTCCCG 117 Query 265 ACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTC 324 ||| ||||||||||||||| || ||||||||||||||| ||||||||| | | ||||||| Sbjct 116 ACTGACCCTGATCCGATTAACGTTGATCAGGAAACCTTGGTCTTTCGGTGGGCGGGTTTC 57 Query 325 CCACCC 330 ||||| Sbjct 56 TCACCC 51 >seq306734 Length=316 Score = 127 bits (140), Expect = 4e-27 Identities = 131/170 (77%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||||||| |||||||||||| ||| | ||||||| || |||| || | || | | Sbjct 169 CTTTAACGAACTATTCCGTCAGTTCGCGTCAGTGTCACTACTCCGTCACCGCATCGCAGT 110 Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCT 255 | | |||| |||||| ||||| || | ||||||| |||| ||||||| |||| Sbjct 109 TATAAAAAGTACTGGAATATTAACCAGTTGT-CCATCGGCTGCGCCTTTCGGCTTCACCT 51 Query 256 TATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGT 305 || | ||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 50 TAGGCCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTAGT 1 >seq184585 Length=242 Score = 114 bits (126), Expect = 2e-23 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||||||| |||||||||||| ||| | | ||||| || |||| | | || | | Sbjct 169 CTTTAACGAACTATTCCGTCAGTTCGCGTCAGTTTCACTACTCCGTCACTGCATCGCAGT 110 Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCT 255 | | ||| |||||| ||||| || | ||||||| |||| ||||||| |||| Sbjct 109 TATAAAACGTACTGGAATATTAACCAGTTAT-CCATCGGCTACGCCCTTCGGCTTCACCT 51 Query 256 TATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGT 305 || | ||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 50 TAGGCCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTAGT 1 >seq234652 Length=214 Score = 96.9 bits (106), Expect = 7e-18 Identities = 137/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||||||| |||||||||||| |||| | | ||| || |||| || | |||| | Sbjct 187 CTTTAACGAACTATTCCGTCAGTTCGCGGTGCTTTCATCACTCCGTCGCCCCATCACAAT 128 Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGG-TCTCGCCGTTCGGCTGAACC 254 | | | |||| |||||| ||||| || ||||||| | || || ||||| | || Sbjct 127 TATAAGAAGTACGGGAATATTAACCCGTTG-GCCATCGACTGTC-CCTTTCGGGTTCGCC 70 Query 255 TTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCG 314 ||| | ||||||| ||||| | | ||||||| | | |||||||||||||||||||| | Sbjct 69 TTAGGTCCCGACTAACCCTCAGCTGATTAGCATAGCTGAGGAAACCTTAGTCTTTCGGTG 10 Query 315 AGGGGGTTT 323 | |||||| Sbjct 9 TGCGGGTTT 1 >seq479515 Length=282 Score = 89.7 bits (98), Expect = 1e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 264 GACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTT 323 |||| |||||||||||||||||| ||||||||||||||||||||||||| | | |||||| Sbjct 282 GACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTAGTCTTTCGGTGGGCGGGTTT 223 Query 324 CCCACCC 330 | | ||| Sbjct 222 CTCTCCC 216 >seq103405 Length=3107 Score = 82.4 bits (90), Expect = 1e-13 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262 |||| |||||| ||||| || | ||||| | || ||||| | | ||| | || Sbjct 1188 AGTATGGGAATATTAACCCATTGT-CCATCCACTACCCCTTTCGGGTTCGCGTTAGGTCC 1130 Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322 ||||| ||||| | | ||||||| | | |||||||||||||||||||| ||||||||| Sbjct 1129 CGACTAACCCTCAGCTGATTAGCATGGCTGAGGAAACCTTAGTCTTTCGGTGAGGGGGTT 1070 Query 323 TCCCACCCCC 332 || | ||||| Sbjct 1069 TCTCGCCCCC 1060 >seq165751 Length=244 Score = 78.8 bits (86), Expect = 2e-12 Identities = 138/199 (69%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||||||| |||||||||||| |||| | |||| ||||||| | | ||| Sbjct 198 CTTTAACGAACTATTCCGTCAGTTCGCGGTACTTTCACCACTGCGTCACTCCATCA---- 143 Query 196 CAAATGT----AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGA 251 ||| | | |||| |||||| ||||| || ||||||| || || ||||| || Sbjct 142 CAACTATTACAAGTACGGGAATATTAACCCGTT-GGCCATCGACGTCCCCCTTCGGGTGT 84 Query 252 ACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCG 311 ||||| | ||||||| |||| | | ||||||| | | ||||||||| ||||| || Sbjct 83 GCCTTAGGTCCCGACTAACCCGCAGCTGATTAGCATAGCTGCGGAAACCTTGGTCTTACG 24 Query 312 GCGAGGGGGTTTCCCACCC 330 | | | ||||||| | ||| Sbjct 23 GTGTGCGGGTTTCTCGCCC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 954953980800