Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01000150.1
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
seq82257 165 6e-39
seq39854 86.0 4e-15
seq371512 80.6 2e-13
seq415984 77.0 2e-12
seq257583 77.0 2e-12
seq74058 77.0 2e-12
>seq82257
Length=206
Score = 165 bits (182), Expect = 6e-39
Identities = 111/124 (90%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
||||| || ||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 66 CCCTAGGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAACCGTCC 125
Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134
|| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CCCTTGCGGTTAGACTAGCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 185
Query 135 TGTA 138
||||
Sbjct 186 TGTA 189
>seq39854
Length=384
Score = 86.0 bits (94), Expect = 4e-15
Identities = 95/126 (75%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||||||| ||||||||| |||||||||||||||| || | || ||||| | ||
Sbjct 2 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAGCCCACCGTGGTCGCCTGCC 61
Query 75 TCCCGAA--GGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132
|||| | ||||| | | |||| || | || ||||||||||||||||||||||
Sbjct 62 TCCCTTACGGGTTAGCGCAACGCCTTCGGGTGAACCCAACTCCCATGGTGTGACGGGCGG 121
Query 133 TGTGTA 138
||||||
Sbjct 122 TGTGTA 127
>seq371512
Length=327
Score = 80.6 bits (88), Expect = 2e-13
Identities = 92/124 (74%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||||||| ||||||||| |||||||||||||||| | | | ||||| || |
Sbjct 10 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGCTGCT 69
Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134
||| ||||| ||| |||| | |||| ||||||||||||||||||||||||
Sbjct 70 TCCTTGCGGTTAGCGCACCGGCTTCGGGTAGAACCAACTCCCATGGTGTGACGGGCGGTG 129
Query 135 TGTA 138
||||
Sbjct 130 TGTA 133
>seq415984
Length=345
Score = 77.0 bits (84), Expect = 2e-12
Identities = 94/126 (75%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGC-GCC 73
|||||||| ||||||||| |||||||||||||||| || | || ||||| | |||
Sbjct 2 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAGCCCACCGTGGTCGCCTGCC 61
Query 74 -CTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132
||| | |||| | | |||| || | || ||||||||||||||||||||||
Sbjct 62 TCTCTTGCGAGTTAGCGCAACGCCTTCGGGTGAACCCAACTCCCATGGTGTGACGGGCGG 121
Query 133 TGTGTA 138
||||||
Sbjct 122 TGTGTA 127
>seq257583
Length=345
Score = 77.0 bits (84), Expect = 2e-12
Identities = 94/126 (75%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGC-GCC 73
|||||||| ||||||||| |||||||||||||||| || | || ||||| | |||
Sbjct 2 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAGCCCACCGTGGTCGCCTGCC 61
Query 74 -CTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132
||| | |||| | | |||| || | || ||||||||||||||||||||||
Sbjct 62 TCTCTTGCGAGTTAGCGCAACGCCTTCGGGTGAACCCAACTCCCATGGTGTGACGGGCGG 121
Query 133 TGTGTA 138
||||||
Sbjct 122 TGTGTA 127
>seq74058
Length=383
Score = 77.0 bits (84), Expect = 2e-12
Identities = 94/126 (75%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGC-GCC 73
|||||||| ||||||||| |||||||||||||||| || | || ||||| | |||
Sbjct 382 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAGCCCACCGTGGTCGCCTGCC 323
Query 74 -CTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132
||| | |||| | | |||| || | || ||||||||||||||||||||||
Sbjct 322 TCTCTTGCGAGTTAGCGCAACGCCTTCGGGTGAACCCAACTCCCATGGTGTGACGGGCGG 263
Query 133 TGTGTA 138
||||||
Sbjct 262 TGTGTA 257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 343896968520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |