Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq82257 165 6e-39 seq39854 86.0 4e-15 seq371512 80.6 2e-13 seq415984 77.0 2e-12 seq257583 77.0 2e-12 seq74058 77.0 2e-12 >seq82257 Length=206 Score = 165 bits (182), Expect = 6e-39 Identities = 111/124 (90%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 ||||| || ||||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 66 CCCTAGGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAACCGTCC 125 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 || ||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 126 CCCTTGCGGTTAGACTAGCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 185 Query 135 TGTA 138 |||| Sbjct 186 TGTA 189 >seq39854 Length=384 Score = 86.0 bits (94), Expect = 4e-15 Identities = 95/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| || | || ||||| | || Sbjct 2 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAGCCCACCGTGGTCGCCTGCC 61 Query 75 TCCCGAA--GGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 |||| | ||||| | | |||| || | || |||||||||||||||||||||| Sbjct 62 TCCCTTACGGGTTAGCGCAACGCCTTCGGGTGAACCCAACTCCCATGGTGTGACGGGCGG 121 Query 133 TGTGTA 138 |||||| Sbjct 122 TGTGTA 127 >seq371512 Length=327 Score = 80.6 bits (88), Expect = 2e-13 Identities = 92/124 (74%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| | | | ||||| || | Sbjct 10 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGCTGCT 69 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 ||| ||||| ||| |||| | |||| |||||||||||||||||||||||| Sbjct 70 TCCTTGCGGTTAGCGCACCGGCTTCGGGTAGAACCAACTCCCATGGTGTGACGGGCGGTG 129 Query 135 TGTA 138 |||| Sbjct 130 TGTA 133 >seq415984 Length=345 Score = 77.0 bits (84), Expect = 2e-12 Identities = 94/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGC-GCC 73 |||||||| ||||||||| |||||||||||||||| || | || ||||| | ||| Sbjct 2 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAGCCCACCGTGGTCGCCTGCC 61 Query 74 -CTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 ||| | |||| | | |||| || | || |||||||||||||||||||||| Sbjct 62 TCTCTTGCGAGTTAGCGCAACGCCTTCGGGTGAACCCAACTCCCATGGTGTGACGGGCGG 121 Query 133 TGTGTA 138 |||||| Sbjct 122 TGTGTA 127 >seq257583 Length=345 Score = 77.0 bits (84), Expect = 2e-12 Identities = 94/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGC-GCC 73 |||||||| ||||||||| |||||||||||||||| || | || ||||| | ||| Sbjct 2 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAGCCCACCGTGGTCGCCTGCC 61 Query 74 -CTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 ||| | |||| | | |||| || | || |||||||||||||||||||||| Sbjct 62 TCTCTTGCGAGTTAGCGCAACGCCTTCGGGTGAACCCAACTCCCATGGTGTGACGGGCGG 121 Query 133 TGTGTA 138 |||||| Sbjct 122 TGTGTA 127 >seq74058 Length=383 Score = 77.0 bits (84), Expect = 2e-12 Identities = 94/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGC-GCC 73 |||||||| ||||||||| |||||||||||||||| || | || ||||| | ||| Sbjct 382 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAGCCCACCGTGGTCGCCTGCC 323 Query 74 -CTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 ||| | |||| | | |||| || | || |||||||||||||||||||||| Sbjct 322 TCTCTTGCGAGTTAGCGCAACGCCTTCGGGTGAACCCAACTCCCATGGTGTGACGGGCGG 263 Query 133 TGTGTA 138 |||||| Sbjct 262 TGTGTA 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343896968520