Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01000345.1
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
seq172051 239 5e-61
seq57615 132 5e-29
seq477106 113 5e-23
>seq172051
Length=445
Score = 239 bits (264), Expect = 5e-61
Identities = 171/194 (88%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60
|||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||
Sbjct 99 TTACCTGAAGCTTAGAGGCTTTTCCTGGAAGCATGGCATCAACCACTTCTCCTTCTAAAA 158
Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGA-ATCCCGGATTTACCTAAGATTCCAGCCTA 119
|| ||||||||||||| ||||| |||| |||||||||||||| |||||||
Sbjct 159 GAAGGATCGTCATCAGCTCTCGGCC-TAGACCGTCCGGATTTACCTAAACAGTCAGCCTA 217
Query 120 CCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 218 CCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCCCCATCGC 277
Query 180 ATTAACCAGAAGTA 193
| |||| |||||||
Sbjct 278 AGTAACTAGAAGTA 291
>seq57615
Length=208
Score = 132 bits (146), Expect = 5e-29
Identities = 101/118 (86%), Gaps = 1/118 (1%)
Strand=Plus/Minus
Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60
|||||||||||||||| ||||||||||||||||||||||||| |||||| | || |
Sbjct 117 TTACCTGAAGCTTAGAGGCTTTTCTTGGAAGCATGGCATCAAGCACTTCATGTTC-CGAG 59
Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCT 118
|| |||||||||||| || | ||||||| ||||||||||||||||||| |||||||
Sbjct 58 GAACACTCGTCATCAGTTCTCAGCCTTAGCATCCCGGATTTACCTAAGACACCAGCCT 1
>seq477106
Length=1327
Score = 113 bits (124), Expect = 5e-23
Identities = 134/178 (75%), Gaps = 8/178 (4%)
Strand=Plus/Plus
Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64
||||||||||| ||||||| ||||||| ||| |||| ||||||| ||||| |
Sbjct 346 CTGAAGCTTAGGGGCTTTTCCTGGAAGCGTGGTATCAGTCACTTCGC--TCTAATG---A 400
Query 65 ACTCGTCATCAGCTCCCGGCCTTAGA--ATCCCGGATTTACCTAAGATTCCAGCCTACCA 122
|||||| || | | ||| ||| | ||||||||||| |||||||| | ||||||
Sbjct 401 GCTCGTC-TCGGTGCTCGGAGTTAAAGGATCCCGGATTTGCCTAAGATCCACTCCTACCG 459
Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180
|||| | |||||||||||||| | | |||| ||||||||||||| ||||||||
Sbjct 460 CCTTTCTCCAGGACAACCAACGCCTGGTAGACCTAACCTTCTCCGTCCCCCCATCGCA 517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515760301206
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |