Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq172051 239 5e-61 seq57615 132 5e-29 seq477106 113 5e-23 >seq172051 Length=445 Score = 239 bits (264), Expect = 5e-61 Identities = 171/194 (88%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||| Sbjct 99 TTACCTGAAGCTTAGAGGCTTTTCCTGGAAGCATGGCATCAACCACTTCTCCTTCTAAAA 158 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGA-ATCCCGGATTTACCTAAGATTCCAGCCTA 119 || ||||||||||||| ||||| |||| |||||||||||||| ||||||| Sbjct 159 GAAGGATCGTCATCAGCTCTCGGCC-TAGACCGTCCGGATTTACCTAAACAGTCAGCCTA 217 Query 120 CCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 218 CCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCCCCATCGC 277 Query 180 ATTAACCAGAAGTA 193 | |||| ||||||| Sbjct 278 AGTAACTAGAAGTA 291 >seq57615 Length=208 Score = 132 bits (146), Expect = 5e-29 Identities = 101/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||||||||||| ||||||||||||||||||||||||| |||||| | || | Sbjct 117 TTACCTGAAGCTTAGAGGCTTTTCTTGGAAGCATGGCATCAAGCACTTCATGTTC-CGAG 59 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCT 118 || |||||||||||| || | ||||||| ||||||||||||||||||| ||||||| Sbjct 58 GAACACTCGTCATCAGTTCTCAGCCTTAGCATCCCGGATTTACCTAAGACACCAGCCT 1 >seq477106 Length=1327 Score = 113 bits (124), Expect = 5e-23 Identities = 134/178 (75%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64 ||||||||||| ||||||| ||||||| ||| |||| ||||||| ||||| | Sbjct 346 CTGAAGCTTAGGGGCTTTTCCTGGAAGCGTGGTATCAGTCACTTCGC--TCTAATG---A 400 Query 65 ACTCGTCATCAGCTCCCGGCCTTAGA--ATCCCGGATTTACCTAAGATTCCAGCCTACCA 122 |||||| || | | ||| ||| | ||||||||||| |||||||| | |||||| Sbjct 401 GCTCGTC-TCGGTGCTCGGAGTTAAAGGATCCCGGATTTGCCTAAGATCCACTCCTACCG 459 Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 |||| | |||||||||||||| | | |||| ||||||||||||| |||||||| Sbjct 460 CCTTTCTCCAGGACAACCAACGCCTGGTAGACCTAACCTTCTCCGTCCCCCCATCGCA 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515760301206