Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq477106 170 2e-40
seq274727 111 1e-22
seq91247 109 5e-22
seq13028 105 6e-21
seq446665 104 2e-20
seq103405 102 8e-20
seq312482 100 3e-19
seq257769 100 3e-19
seq483964 95.1 1e-17
seq394588 95.1 1e-17
seq511386 87.8 2e-15
seq247545 86.0 6e-15
seq452880 84.2 2e-14
seq226149 84.2 2e-14
seq164262 84.2 2e-14
seq80657 82.4 7e-14
seq23087 80.6 3e-13
seq201268 77.0 3e-12
seq463373 75.2 1e-11
seq399499 75.2 1e-11
>seq477106
Length=1327
Score = 170 bits (188), Expect = 2e-40
Identities = 99/102 (97%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 179 ACCAGGCCGCTGCGACTGTTTATCAAAAACACAGGACTCTGCAAACACGAAAGTGGACGT 120
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158
||||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 78
>seq274727
Length=2183
Score = 111 bits (122), Expect = 1e-22
Identities = 82/96 (85%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
|||||| | ||||||||||| ||||||||||| |||||| || ||| || |||||
Sbjct 1123 ACCAGGGGGTGGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAATCGAGAGATGACGT 1182
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||| ||||||||||||||||||||||||||||
Sbjct 1183 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 1218
>seq91247
Length=408
Score = 109 bits (120), Expect = 5e-22
Identities = 75/85 (88%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
|||||||||||| |||||||||| |||||| || | | || | |||||||||||| |||
Sbjct 303 GCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGATGCAAATCGACGTATAGGGTCTGA 362
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||||||||||||||||||||||
Sbjct 363 CGCCTGCCCGGTGCCGGAAGGTTAA 387
>seq13028
Length=461
Score = 105 bits (116), Expect = 6e-21
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119
||||| ||||||||||| |||||||||| ||||||| || | |||||| |||| |||
Sbjct 183 AGGCCCAGGCGACTGTTTACCAAAAACACAGGACTCTGCCAAAATGAAAGTTGACGCATA 124
Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||| |||| |||||||||||| ||||||||||
Sbjct 123 GGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 91
>seq446665
Length=2265
Score = 104 bits (114), Expect = 2e-20
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| | ||||||||| |||||| || || ||| |||||||||||| |||
Sbjct 156 GCGACTGTTTACTTAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGTATAGGGTCTGA 97
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||||||||||||||||||||||
Sbjct 96 CGCCTGCCCGGTGCCGGAAGGTTAA 72
>seq103405
Length=3107
Score = 102 bits (112), Expect = 8e-20
Identities = 89/111 (80%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 42 ATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAA 101
|||| || || || | ||||| |||||||||||| |||||||||| ||||||| ||
Sbjct 1973 ATGCTGGCCGCAGTGAAGAGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCTAA 2032
Query 102 CACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||| | ||||||||| |||| |||||||||||| ||||||||||
Sbjct 2033 ATCGAAAGATGCTGTATAGGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 2083
Score = 100 bits (110), Expect = 3e-19
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119
||||| |||||||||||| |||||||||| ||||||| || |||||| | |||||
Sbjct 1784 AGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCTAAATCGAAAGATGCTGTATA 1843
Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||| |||| |||||||||||| ||||||||||
Sbjct 1844 GGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 1876
>seq312482
Length=1174
Score = 100 bits (110), Expect = 3e-19
Identities = 73/85 (86%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| |||||||||| |||||| || ||| |||| ||||||||||| |||
Sbjct 116 GCGACTGTTTAGCAAAAACACAGGGCTCTGCCAAAACGCAAGTTGACGTATAGGGCCTGA 57
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
| |||||||||||| ||||||||||
Sbjct 56 CACCTGCCCGGTGCTGGAAGGTTAA 32
>seq257769
Length=1667
Score = 100 bits (110), Expect = 3e-19
Identities = 73/85 (86%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
|||||||||||| |||||||||| |||||| || | || |||||||||||| |||
Sbjct 311 GCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTTGCAAAACGACGTATAGGGTCTGA 370
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||||||||||||||||||||||
Sbjct 371 CGCCTGCCCGGTGCCGGAAGGTTAA 395
>seq483964
Length=360
Score = 95.1 bits (104), Expect = 1e-17
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 360
>seq394588
Length=262
Score = 95.1 bits (104), Expect = 1e-17
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 21 AGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATT 80
||||| || |||| ||| || || || ||| ||||| | ||||||||||| |
Sbjct 201 AGGGATTTACTCCTGGAGCGTTTGATGGCCGCAGAGACCAGTGGGAAGCGACTGTTTACT 142
Query 81 AAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTG 140
|||||||||| | ||| || ||| |||| || ||||| || ||||||||||||||||
Sbjct 141 AAAAACACAGGTCCGTGCGAAGACGCAAGTCGATGTATACGGACTGACGCCTGCCCGGTG 82
Query 141 CCGGAAGGTTAA 152
| ||||||||||
Sbjct 81 CTGGAAGGTTAA 70
>seq511386
Length=3368
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|| || ||| |||||||| ||||||||||||||||||||||| | ||| || |
Sbjct 879 GGCCGCAGAGACCAGGCCCAAGCGACTGTTTATTAAAAACACAGGTCCGTGCGAAGTTGT 820
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| || ||||| || |||| |||||||||||| ||||||||||
Sbjct 819 AAGACGATGTATACGGACTGACTCCTGCCCGGTGCTGGAAGGTTAA 774
>seq247545
Length=650
Score = 86.0 bits (94), Expect = 6e-15
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| |||||||||| |||||| || || ||| || |||||||| |||
Sbjct 483 GCGACTGTTTAGCAAAAACACAGGTCTCTGCGAAGCCGCAAGGCGAAGTATAGGGGCTGA 542
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
| |||||||||||| ||||||||||
Sbjct 543 CACCTGCCCGGTGCTGGAAGGTTAA 567
>seq452880
Length=1532
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| ||||| | || | ||||||||||||||||||||||| | ||| || ||
Sbjct 1315 GGTCGCAGATAGCGGGGGGAAGCGACTGTTTATTAAAAACACAGGTCCGTGCGAAGTCGT 1374
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | ||||| || ||||||||||||||||| |||| |||||
Sbjct 1375 AAGACGCTGTATACGGACTGACGCCTGCCCGGTGCTGGAACGTTAA 1420
>seq226149
Length=71244
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||||||||| |
Sbjct 52011 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCAT 51952
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||| ||| |||||||||||| ||
Sbjct 51951 AAGACCATGTATGGGGGCTGACGCCTACCCAGTGCCGGAAGGTCAA 51906
>seq164262
Length=463
Score = 84.2 bits (92), Expect = 2e-14
Identities = 72/89 (81%), Gaps = 4/89 (4%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA----AAGTGGACGTATAGGGT 123
||||||||||| |||||||||| |||||| || || ||| |||||||||||
Sbjct 175 GCGACTGTTTAGCAAAAACACAGGGCTCTGCTAAGTCGGCTTCAAGACGACGTATAGGGC 116
Query 124 GTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||||||||||||||| |||||||||
Sbjct 115 CTGACGCCTGCCCGGTGCCTGAAGGTTAA 87
Score = 84.2 bits (92), Expect = 2e-14
Identities = 74/92 (80%), Gaps = 4/92 (4%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA----AAGTGGACGTATAGGGT 123
||||||||||| |||||||||| |||||| || || ||| |||||||||||
Sbjct 357 GCGACTGTTTAGCAAAAACACAGGGCTCTGCTAAGTCGGCTTCAAGACGACGTATAGGGC 298
Query 124 GTGACGCCTGCCCGGTGCCGGAAGGTTAATTG 155
|||||||||||||||||| ||||||||| ||
Sbjct 297 CTGACGCCTGCCCGGTGCCTGAAGGTTAAGTG 266
>seq80657
Length=790
Score = 82.4 bits (90), Expect = 7e-14
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| ||||||||||| | ||| || || ||| || ||||| || |||
Sbjct 168 GCGACTGTTTACTAAAAACACAGGTCCGTGCGAAGTCGCAAGACGATGTATACGGACTGA 109
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||||||||||| ||||||||||
Sbjct 108 CGCCTGCCCGGTGCTGGAAGGTTAA 84
>seq23087
Length=310
Score = 80.6 bits (88), Expect = 3e-13
Identities = 67/82 (82%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 71 ACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGC 130
|||||||| |||||||||| | ||||||| |||||| ||||||||| | ||| |
Sbjct 134 ACTGTTTAGCAAAAACACAGGGCCCTGCAAAATCGAAAGATGACGTATAGAGCCTGATAC 193
Query 131 CTGCCCGGTGCCGGAAGGTTAA 152
||||||||||| ||||||||||
Sbjct 194 CTGCCCGGTGCTGGAAGGTTAA 215
>seq201268
Length=2082
Score = 77.0 bits (84), Expect = 3e-12
Identities = 72/92 (78%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119
||||| ||||||||||| ||||||||||| | ||| || | ||| || |||||
Sbjct 886 AGGCCTGAGCGACTGTTTACTAAAAACACAGGTCCGTGCGAAGTTGTAAGACGAGGTATA 945
Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTA 151
|| |||||||||||||||||||||| ||||
Sbjct 946 CGGACTGACGCCTGCCCGGTGCCGGAACGTTA 977
>seq463373
Length=13887
Score = 75.2 bits (82), Expect = 1e-11
Identities = 80/106 (75%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || ||||||| | | ||||||||| || ||||||| ||| ||||| ||
Sbjct 7730 GGTCGTAGTGACCAGGCTGGGGTGACTGTTTACCAACAACACAGGTCTCCGCAAAGTCGT 7671
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| ||||||||||| ||
Sbjct 7670 AAGACCATGTATGGGGGCTGACGCCTGCCCAATGCCGGAAGGTCAA 7625
>seq399499
Length=6602
Score = 75.2 bits (82), Expect = 1e-11
Identities = 74/96 (77%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
||||||| ||||||||||| |||||||||| ||||||||| || ||| | ||
Sbjct 1742 ACCAGGCACGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCGTAAGACCATGT 1683
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| || ||||||||||| ||| |||||||| ||
Sbjct 1682 ATATGGGCTGACGCCTGCCTAGTGTCGGAAGGTCAA 1647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 474372128887
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |