Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq477106 170 2e-40 seq274727 111 1e-22 seq91247 109 5e-22 seq13028 105 6e-21 seq446665 104 2e-20 seq103405 102 8e-20 seq312482 100 3e-19 seq257769 100 3e-19 seq483964 95.1 1e-17 seq394588 95.1 1e-17 seq511386 87.8 2e-15 seq247545 86.0 6e-15 seq452880 84.2 2e-14 seq226149 84.2 2e-14 seq164262 84.2 2e-14 seq80657 82.4 7e-14 seq23087 80.6 3e-13 seq201268 77.0 3e-12 seq463373 75.2 1e-11 seq399499 75.2 1e-11 >seq477106 Length=1327 Score = 170 bits (188), Expect = 2e-40 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 179 ACCAGGCCGCTGCGACTGTTTATCAAAAACACAGGACTCTGCAAACACGAAAGTGGACGT 120 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||| |||||||||||||||||||||||||||||||||| Sbjct 119 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 78 >seq274727 Length=2183 Score = 111 bits (122), Expect = 1e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| ||||||||||| |||||| || ||| || ||||| Sbjct 1123 ACCAGGGGGTGGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAATCGAGAGATGACGT 1182 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 1183 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 1218 >seq91247 Length=408 Score = 109 bits (120), Expect = 5e-22 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| |||||| || | | || | |||||||||||| ||| Sbjct 303 GCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGATGCAAATCGACGTATAGGGTCTGA 362 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||| Sbjct 363 CGCCTGCCCGGTGCCGGAAGGTTAA 387 >seq13028 Length=461 Score = 105 bits (116), Expect = 6e-21 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| |||||||||| ||||||| || | |||||| |||| ||| Sbjct 183 AGGCCCAGGCGACTGTTTACCAAAAACACAGGACTCTGCCAAAATGAAAGTTGACGCATA 124 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||| |||| |||||||||||| |||||||||| Sbjct 123 GGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 91 >seq446665 Length=2265 Score = 104 bits (114), Expect = 2e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| | ||||||||| |||||| || || ||| |||||||||||| ||| Sbjct 156 GCGACTGTTTACTTAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGTATAGGGTCTGA 97 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||| Sbjct 96 CGCCTGCCCGGTGCCGGAAGGTTAA 72 >seq103405 Length=3107 Score = 102 bits (112), Expect = 8e-20 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 42 ATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAA 101 |||| || || || | ||||| |||||||||||| |||||||||| ||||||| || Sbjct 1973 ATGCTGGCCGCAGTGAAGAGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCTAA 2032 Query 102 CACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| | ||||||||| |||| |||||||||||| |||||||||| Sbjct 2033 ATCGAAAGATGCTGTATAGGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 2083 Score = 100 bits (110), Expect = 3e-19 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| |||||||||||| |||||||||| ||||||| || |||||| | ||||| Sbjct 1784 AGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCTAAATCGAAAGATGCTGTATA 1843 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||| |||| |||||||||||| |||||||||| Sbjct 1844 GGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 1876 >seq312482 Length=1174 Score = 100 bits (110), Expect = 3e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| |||||| || ||| |||| ||||||||||| ||| Sbjct 116 GCGACTGTTTAGCAAAAACACAGGGCTCTGCCAAAACGCAAGTTGACGTATAGGGCCTGA 57 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| |||||||||| Sbjct 56 CACCTGCCCGGTGCTGGAAGGTTAA 32 >seq257769 Length=1667 Score = 100 bits (110), Expect = 3e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| |||||| || | || |||||||||||| ||| Sbjct 311 GCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTTGCAAAACGACGTATAGGGTCTGA 370 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||| Sbjct 371 CGCCTGCCCGGTGCCGGAAGGTTAA 395 >seq483964 Length=360 Score = 95.1 bits (104), Expect = 1e-17 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 306 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 360 >seq394588 Length=262 Score = 95.1 bits (104), Expect = 1e-17 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 21 AGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATT 80 ||||| || |||| ||| || || || ||| ||||| | ||||||||||| | Sbjct 201 AGGGATTTACTCCTGGAGCGTTTGATGGCCGCAGAGACCAGTGGGAAGCGACTGTTTACT 142 Query 81 AAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTG 140 |||||||||| | ||| || ||| |||| || ||||| || |||||||||||||||| Sbjct 141 AAAAACACAGGTCCGTGCGAAGACGCAAGTCGATGTATACGGACTGACGCCTGCCCGGTG 82 Query 141 CCGGAAGGTTAA 152 | |||||||||| Sbjct 81 CTGGAAGGTTAA 70 >seq511386 Length=3368 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 || || ||| |||||||| ||||||||||||||||||||||| | ||| || | Sbjct 879 GGCCGCAGAGACCAGGCCCAAGCGACTGTTTATTAAAAACACAGGTCCGTGCGAAGTTGT 820 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| || ||||| || |||| |||||||||||| |||||||||| Sbjct 819 AAGACGATGTATACGGACTGACTCCTGCCCGGTGCTGGAAGGTTAA 774 >seq247545 Length=650 Score = 86.0 bits (94), Expect = 6e-15 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| |||||| || || ||| || |||||||| ||| Sbjct 483 GCGACTGTTTAGCAAAAACACAGGTCTCTGCGAAGCCGCAAGGCGAAGTATAGGGGCTGA 542 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| |||||||||| Sbjct 543 CACCTGCCCGGTGCTGGAAGGTTAA 567 >seq452880 Length=1532 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| ||||| | || | ||||||||||||||||||||||| | ||| || || Sbjct 1315 GGTCGCAGATAGCGGGGGGAAGCGACTGTTTATTAAAAACACAGGTCCGTGCGAAGTCGT 1374 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | ||||| || ||||||||||||||||| |||| ||||| Sbjct 1375 AAGACGCTGTATACGGACTGACGCCTGCCCGGTGCTGGAACGTTAA 1420 >seq226149 Length=71244 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||||||||| | Sbjct 52011 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCAT 51952 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||| ||| |||||||||||| || Sbjct 51951 AAGACCATGTATGGGGGCTGACGCCTACCCAGTGCCGGAAGGTCAA 51906 >seq164262 Length=463 Score = 84.2 bits (92), Expect = 2e-14 Identities = 72/89 (81%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA----AAGTGGACGTATAGGGT 123 ||||||||||| |||||||||| |||||| || || ||| ||||||||||| Sbjct 175 GCGACTGTTTAGCAAAAACACAGGGCTCTGCTAAGTCGGCTTCAAGACGACGTATAGGGC 116 Query 124 GTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||||||||| ||||||||| Sbjct 115 CTGACGCCTGCCCGGTGCCTGAAGGTTAA 87 Score = 84.2 bits (92), Expect = 2e-14 Identities = 74/92 (80%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA----AAGTGGACGTATAGGGT 123 ||||||||||| |||||||||| |||||| || || ||| ||||||||||| Sbjct 357 GCGACTGTTTAGCAAAAACACAGGGCTCTGCTAAGTCGGCTTCAAGACGACGTATAGGGC 298 Query 124 GTGACGCCTGCCCGGTGCCGGAAGGTTAATTG 155 |||||||||||||||||| ||||||||| || Sbjct 297 CTGACGCCTGCCCGGTGCCTGAAGGTTAAGTG 266 >seq80657 Length=790 Score = 82.4 bits (90), Expect = 7e-14 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| | ||| || || ||| || ||||| || ||| Sbjct 168 GCGACTGTTTACTAAAAACACAGGTCCGTGCGAAGTCGCAAGACGATGTATACGGACTGA 109 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||||| |||||||||| Sbjct 108 CGCCTGCCCGGTGCTGGAAGGTTAA 84 >seq23087 Length=310 Score = 80.6 bits (88), Expect = 3e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 71 ACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGC 130 |||||||| |||||||||| | ||||||| |||||| ||||||||| | ||| | Sbjct 134 ACTGTTTAGCAAAAACACAGGGCCCTGCAAAATCGAAAGATGACGTATAGAGCCTGATAC 193 Query 131 CTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||| |||||||||| Sbjct 194 CTGCCCGGTGCTGGAAGGTTAA 215 >seq201268 Length=2082 Score = 77.0 bits (84), Expect = 3e-12 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| ||||||||||| | ||| || | ||| || ||||| Sbjct 886 AGGCCTGAGCGACTGTTTACTAAAAACACAGGTCCGTGCGAAGTTGTAAGACGAGGTATA 945 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTA 151 || |||||||||||||||||||||| |||| Sbjct 946 CGGACTGACGCCTGCCCGGTGCCGGAACGTTA 977 >seq463373 Length=13887 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| | | ||||||||| || ||||||| ||| ||||| || Sbjct 7730 GGTCGTAGTGACCAGGCTGGGGTGACTGTTTACCAACAACACAGGTCTCCGCAAAGTCGT 7671 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||| || Sbjct 7670 AAGACCATGTATGGGGGCTGACGCCTGCCCAATGCCGGAAGGTCAA 7625 >seq399499 Length=6602 Score = 75.2 bits (82), Expect = 1e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 ||||||| ||||||||||| |||||||||| ||||||||| || ||| | || Sbjct 1742 ACCAGGCACGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCGTAAGACCATGT 1683 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| || ||||||||||| ||| |||||||| || Sbjct 1682 ATATGGGCTGACGCCTGCCTAGTGTCGGAAGGTCAA 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474372128887