Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq103405 205 1e-50
seq508684 179 4e-43
seq423089 159 4e-37
seq274727 140 4e-31
seq511386 129 6e-28
seq257769 123 3e-26
seq201268 111 2e-22
seq78452 109 6e-22
seq13245 98.7 1e-18
seq188 96.9 4e-18
seq212278 93.3 5e-17
seq524056 89.7 6e-16
seq226149 87.8 2e-15
seq411397 86.0 7e-15
seq399499 86.0 7e-15
seq104566 86.0 7e-15
seq324390 84.2 2e-14
seq223849 82.4 8e-14
seq303487 78.8 1e-12
>seq103405
Length=3107
Score = 205 bits (226), Expect = 1e-50
Identities = 147/178 (83%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2294 GGGTCTTTTCGTCCCATTGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACCGAG 2235
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2234 CTCGTGGCTGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGA 2175
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2174 CAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 2117
>seq508684
Length=225
Score = 179 bits (198), Expect = 4e-43
Identities = 128/151 (85%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||||| | |||||||| ||||||||||||||||||||||||||||| |
Sbjct 156 CGGGGTCTTTCCGTCCCGTGGCGGGTAACCGGCATCTTCACCGATACTACAATTTCACCG 97
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
|||| || ||||||| || |||||||||||||||||||||||||||
Sbjct 96 GGCTCGTGGAGGAGACAGCGTTCAACTCATTAGACCATTCGTGCAGGTCGGAACTTACCC 37
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||||
Sbjct 36 GACAAGGAATTTCGCTACCTTAGGACCGTTA 6
>seq423089
Length=210
Score = 159 bits (176), Expect = 4e-37
Identities = 111/130 (85%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||||| | ||||||| |||||||||||||||| ||||||||||||| |
Sbjct 130 CGGGGTCTTTCCGTCCCGTGGCGGGTACTCGGCATCTTCACCGAGACTACAATTTCACCG 71
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 70 AGCTCACGGCTGAGACAGCGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCC 11
Query 143 GACAAGGAAT 152
||||||||||
Sbjct 10 GACAAGGAAT 1
>seq274727
Length=2183
Score = 140 bits (154), Expect = 4e-31
Identities = 118/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| | | |||||| | |||||||||| | | | ||||||| |||||
Sbjct 1420 GGGTCTTTCCGTCTGACCACGGGTACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 1361
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
| || | | ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1360 CCCATGCTGGAGACAGTGGGGAGGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 1301
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||
Sbjct 1300 CAAGGAATTTCGCTACCTTAGGACCGTTA 1272
>seq511386
Length=3368
Score = 129 bits (142), Expect = 6e-28
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| ||||| |||| |||| ||||||| || || | ||||||| | |
Sbjct 412 CGGGGTCTTTCCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAGTGCAATTTCGCCG 471
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
|| || ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 472 AGTCCATGGTTGAGACAGCGCCCAAGTCGTTACTCCATTCGTGCAGGTCGGAACTTACCC 531
Query 143 GACAAGGAATTTCGCTACCTTAGGA 167
|||||||||||||||||||||||||
Sbjct 532 GACAAGGAATTTCGCTACCTTAGGA 556
>seq257769
Length=1667
Score = 123 bits (136), Expect = 3e-26
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||| | ||| || | | |||||||||| | | | ||||||| ||||
Sbjct 598 GGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCTGA 539
Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | ||||||| ||| |||||||||||||||||||||||||||
Sbjct 538 GTCTATACTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 479
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 478 ACAAGGAATTTCGCTACCTTAGGACCGTTA 449
>seq201268
Length=2082
Score = 111 bits (122), Expect = 2e-22
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| ||||| |||| |||| ||||||| || |||| ||||||| |
Sbjct 1271 CGGGGTCTTTCCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTACTGCAATTTCGTCG 1212
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| | ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 1211 GGTCCGTGGTCGAGACAGCGCCCGAGTCGTGACGCCATTCGTGCAGGTCGGAACTTACCC 1152
Query 143 GACAAGGAATTTCGCTACCTTAGGA 167
|||||||||||||||||||||||||
Sbjct 1151 GACAAGGAATTTCGCTACCTTAGGA 1127
>seq78452
Length=348
Score = 109 bits (120), Expect = 6e-22
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| ||||| ||| |||| ||||||| || || | ||||||| | |
Sbjct 134 CGGGGTCTTTCCGTCCTTCTGCGCGTAACGAGCATCTTTACTCGTAGTGCAATTTCGCCG 75
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
|| ||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 74 AGTTCACGGTGGAGACAGCTGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 15
Query 143 GACAAGGAATTTCG 156
||||||||||||||
Sbjct 14 GACAAGGAATTTCG 1
>seq13245
Length=471
Score = 98.7 bits (108), Expect = 1e-18
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||| | |||||| | | ||||||| || | | | ||||||| ||||
Sbjct 339 GGGGTCTTTCCGTCTAACCGCGGGAAGTGTGCATCTTGACACACAGTTCAATTTCGCTGA 398
Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| ||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 399 GTCCACATCAGAGACAGCGGGGAGATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 458
Query 144 ACAAGGAATTTCG 156
|||||||||||||
Sbjct 459 ACAAGGAATTTCG 471
>seq188
Length=531
Score = 96.9 bits (106), Expect = 4e-18
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||||| | ||||||| |||| ||||||||| || |||||||||| ||
Sbjct 425 GGGGTCTTTCCGTCCCGTTGCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCGA 484
Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGT 130
||||| || |||||||| ||||||||||||||||||
Sbjct 485 GCTCATGGCTGAGACAGCGCCCAGATCGTTACACCATTCGTGCAGGT 531
>seq212278
Length=1831
Score = 93.3 bits (102), Expect = 5e-17
Identities = 55/56 (98%), Gaps = 1/56 (2%)
Strand=Plus/Minus
Query 116 ACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 760 ACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA-GACCGT 706
>seq524056
Length=5204
Score = 89.7 bits (98), Expect = 6e-16
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2363 CCTTTCGTGCGGGTTGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 2419
>seq226149
Length=71244
Score = 87.8 bits (96), Expect = 2e-15
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 51779 TACGCCTTTCATGCGGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 51838
Query 173 A 173
|
Sbjct 51839 A 51839
>seq411397
Length=20711
Score = 86.0 bits (94), Expect = 7e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 6314 CCTTTCGTGCAGGTCGGAACTTACTTGACAAGGAATTTCGCTACCTTAGGACCATTA 6370
>seq399499
Length=6602
Score = 86.0 bits (94), Expect = 7e-15
Identities = 107/148 (72%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 27 GTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCT 86
|||||| |||| || |||| || ||||||||| || | | ||||||| ||||
Sbjct 1434 GTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCAAAGACATGTCTATTTCACCGAGC- 1492
Query 87 CACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGAC 145
| | | ||||||| ||| | ||| ||| ||||||||||||||||||
Sbjct 1493 CTCTCTCCGAGACAGTTCCCAGATCGTTACGCGTTTCATGCGGGTCGGAACTTACCCGAC 1552
Query 146 AAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||| ||||||||
Sbjct 1553 AAGGAATTTCGCTACCTTACGACCGTTA 1580
>seq104566
Length=738
Score = 86.0 bits (94), Expect = 7e-15
Identities = 108/150 (72%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || | |||||||| || | | ||||||| |||
Sbjct 551 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGAATCTTCACAGACATGTCTATTTCACCGAG 610
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || || |||| |||||||||||||| |
Sbjct 611 C-CTCTCTCCGAGACAGTGCCCAAATCATTACGCCTTTTGTGCGGGTCGGAACTTACCAG 669
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||| |||||||||||||||| |||||||
Sbjct 670 ACAAGAAATTTCGCTACCTTAGTACCGTTA 699
>seq324390
Length=462
Score = 84.2 bits (92), Expect = 2e-14
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||||| | |||||||| |||||||||||||| |||||||||||||| |
Sbjct 402 CGGGGTCTTTCCGTCCCGTGGCGGGTAAGCGGCATCTTCACCGCTACTACAATTTCACCG 461
Query 83 A 83
|
Sbjct 462 A 462
>seq223849
Length=268
Score = 82.4 bits (90), Expect = 8e-14
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||||| | ||||||||||||| ||||||||||||| |||||||||| ||
Sbjct 60 GGGGTCTTTCCGTCCCGTTGCGGGTAATCGGCGTCTTCACCGATACCACAATTTCACCGA 1
>seq303487
Length=81040
Score = 78.8 bits (86), Expect = 1e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|||||| || ||||||||||||| |||| | ||||||||||| | |||||||||||||||
Sbjct 19602 TACACCTTTTGTGCAGGTCGGAAGTTACTCAACAAGGAATTTTGTTACCTTAGGACCGTT 19543
Query 173 A 173
|
Sbjct 19542 A 19542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 544413651273
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |