Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq103405 205 1e-50 seq508684 179 4e-43 seq423089 159 4e-37 seq274727 140 4e-31 seq511386 129 6e-28 seq257769 123 3e-26 seq201268 111 2e-22 seq78452 109 6e-22 seq13245 98.7 1e-18 seq188 96.9 4e-18 seq212278 93.3 5e-17 seq524056 89.7 6e-16 seq226149 87.8 2e-15 seq411397 86.0 7e-15 seq399499 86.0 7e-15 seq104566 86.0 7e-15 seq324390 84.2 2e-14 seq223849 82.4 8e-14 seq303487 78.8 1e-12 >seq103405 Length=3107 Score = 205 bits (226), Expect = 1e-50 Identities = 147/178 (83%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 2294 GGGTCTTTTCGTCCCATTGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACCGAG 2235 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 ||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct 2234 CTCGTGGCTGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGA 2175 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2174 CAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 2117 >seq508684 Length=225 Score = 179 bits (198), Expect = 4e-43 Identities = 128/151 (85%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||||| | |||||||| ||||||||||||||||||||||||||||| | Sbjct 156 CGGGGTCTTTCCGTCCCGTGGCGGGTAACCGGCATCTTCACCGATACTACAATTTCACCG 97 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 |||| || ||||||| || ||||||||||||||||||||||||||| Sbjct 96 GGCTCGTGGAGGAGACAGCGTTCAACTCATTAGACCATTCGTGCAGGTCGGAACTTACCC 37 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 36 GACAAGGAATTTCGCTACCTTAGGACCGTTA 6 >seq423089 Length=210 Score = 159 bits (176), Expect = 4e-37 Identities = 111/130 (85%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||||| | ||||||| |||||||||||||||| ||||||||||||| | Sbjct 130 CGGGGTCTTTCCGTCCCGTGGCGGGTACTCGGCATCTTCACCGAGACTACAATTTCACCG 71 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 70 AGCTCACGGCTGAGACAGCGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCC 11 Query 143 GACAAGGAAT 152 |||||||||| Sbjct 10 GACAAGGAAT 1 >seq274727 Length=2183 Score = 140 bits (154), Expect = 4e-31 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | | |||||| | |||||||||| | | | ||||||| ||||| Sbjct 1420 GGGTCTTTCCGTCTGACCACGGGTACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 1361 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | || | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 1360 CCCATGCTGGAGACAGTGGGGAGGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 1301 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 1300 CAAGGAATTTCGCTACCTTAGGACCGTTA 1272 >seq511386 Length=3368 Score = 129 bits (142), Expect = 6e-28 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| |||| |||| ||||||| || || | ||||||| | | Sbjct 412 CGGGGTCTTTCCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAGTGCAATTTCGCCG 471 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || || ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 472 AGTCCATGGTTGAGACAGCGCCCAAGTCGTTACTCCATTCGTGCAGGTCGGAACTTACCC 531 Query 143 GACAAGGAATTTCGCTACCTTAGGA 167 ||||||||||||||||||||||||| Sbjct 532 GACAAGGAATTTCGCTACCTTAGGA 556 >seq257769 Length=1667 Score = 123 bits (136), Expect = 3e-26 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| | ||| || | | |||||||||| | | | ||||||| |||| Sbjct 598 GGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCTGA 539 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | ||||||| ||| ||||||||||||||||||||||||||| Sbjct 538 GTCTATACTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 479 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 478 ACAAGGAATTTCGCTACCTTAGGACCGTTA 449 >seq201268 Length=2082 Score = 111 bits (122), Expect = 2e-22 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| |||| |||| ||||||| || |||| ||||||| | Sbjct 1271 CGGGGTCTTTCCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTACTGCAATTTCGTCG 1212 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | | ||| ||||||| || |||||||||||||||||||||||||| Sbjct 1211 GGTCCGTGGTCGAGACAGCGCCCGAGTCGTGACGCCATTCGTGCAGGTCGGAACTTACCC 1152 Query 143 GACAAGGAATTTCGCTACCTTAGGA 167 ||||||||||||||||||||||||| Sbjct 1151 GACAAGGAATTTCGCTACCTTAGGA 1127 >seq78452 Length=348 Score = 109 bits (120), Expect = 6e-22 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| ||| |||| ||||||| || || | ||||||| | | Sbjct 134 CGGGGTCTTTCCGTCCTTCTGCGCGTAACGAGCATCTTTACTCGTAGTGCAATTTCGCCG 75 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || ||||||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 74 AGTTCACGGTGGAGACAGCTGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 15 Query 143 GACAAGGAATTTCG 156 |||||||||||||| Sbjct 14 GACAAGGAATTTCG 1 >seq13245 Length=471 Score = 98.7 bits (108), Expect = 1e-18 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| | |||||| | | ||||||| || | | | ||||||| |||| Sbjct 339 GGGGTCTTTCCGTCTAACCGCGGGAAGTGTGCATCTTGACACACAGTTCAATTTCGCTGA 398 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | ||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct 399 GTCCACATCAGAGACAGCGGGGAGATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 458 Query 144 ACAAGGAATTTCG 156 ||||||||||||| Sbjct 459 ACAAGGAATTTCG 471 >seq188 Length=531 Score = 96.9 bits (106), Expect = 4e-18 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||||| | ||||||| |||| ||||||||| || |||||||||| || Sbjct 425 GGGGTCTTTCCGTCCCGTTGCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCGA 484 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGT 130 ||||| || |||||||| |||||||||||||||||| Sbjct 485 GCTCATGGCTGAGACAGCGCCCAGATCGTTACACCATTCGTGCAGGT 531 >seq212278 Length=1831 Score = 93.3 bits (102), Expect = 5e-17 Identities = 55/56 (98%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 116 ACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 760 ACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA-GACCGT 706 >seq524056 Length=5204 Score = 89.7 bits (98), Expect = 6e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2363 CCTTTCGTGCGGGTTGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 2419 >seq226149 Length=71244 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 51779 TACGCCTTTCATGCGGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 51838 Query 173 A 173 | Sbjct 51839 A 51839 >seq411397 Length=20711 Score = 86.0 bits (94), Expect = 7e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 6314 CCTTTCGTGCAGGTCGGAACTTACTTGACAAGGAATTTCGCTACCTTAGGACCATTA 6370 >seq399499 Length=6602 Score = 86.0 bits (94), Expect = 7e-15 Identities = 107/148 (72%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 27 GTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCT 86 |||||| |||| || |||| || ||||||||| || | | ||||||| |||| Sbjct 1434 GTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCAAAGACATGTCTATTTCACCGAGC- 1492 Query 87 CACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGAC 145 | | | ||||||| ||| | ||| ||| |||||||||||||||||| Sbjct 1493 CTCTCTCCGAGACAGTTCCCAGATCGTTACGCGTTTCATGCGGGTCGGAACTTACCCGAC 1552 Query 146 AAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||| |||||||| Sbjct 1553 AAGGAATTTCGCTACCTTACGACCGTTA 1580 >seq104566 Length=738 Score = 86.0 bits (94), Expect = 7e-15 Identities = 108/150 (72%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || | |||||||| || | | ||||||| ||| Sbjct 551 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGAATCTTCACAGACATGTCTATTTCACCGAG 610 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || || |||| |||||||||||||| | Sbjct 611 C-CTCTCTCCGAGACAGTGCCCAAATCATTACGCCTTTTGTGCGGGTCGGAACTTACCAG 669 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||| |||||||||||||||| ||||||| Sbjct 670 ACAAGAAATTTCGCTACCTTAGTACCGTTA 699 >seq324390 Length=462 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||||| | |||||||| |||||||||||||| |||||||||||||| | Sbjct 402 CGGGGTCTTTCCGTCCCGTGGCGGGTAAGCGGCATCTTCACCGCTACTACAATTTCACCG 461 Query 83 A 83 | Sbjct 462 A 462 >seq223849 Length=268 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||||| | ||||||||||||| ||||||||||||| |||||||||| || Sbjct 60 GGGGTCTTTCCGTCCCGTTGCGGGTAATCGGCGTCTTCACCGATACCACAATTTCACCGA 1 >seq303487 Length=81040 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| || ||||||||||||| |||| | ||||||||||| | ||||||||||||||| Sbjct 19602 TACACCTTTTGTGCAGGTCGGAAGTTACTCAACAAGGAATTTTGTTACCTTAGGACCGTT 19543 Query 173 A 173 | Sbjct 19542 A 19542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544413651273