Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001182.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
seq256835 203 5e-50
seq236426 132 7e-29
seq331112 127 3e-27
seq474123 122 1e-25
seq370001 114 2e-23
seq359633 107 3e-21
seq450282 104 3e-20
seq475283 98.7 1e-18
seq391172 98.7 1e-18
seq320304 93.3 6e-17
seq106020 93.3 6e-17
seq448926 87.8 3e-15
seq298836 82.4 1e-13
seq251291 82.4 1e-13
seq101943 82.4 1e-13
seq440701 77.0 5e-12
>seq256835
Length=1256
Score = 203 bits (224), Expect = 5e-50
Identities = 197/252 (78%), Gaps = 1/252 (0%)
Strand=Plus/Plus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60
||||||| |||||||||||||| ||||||||||||||||| || || | |||| |
Sbjct 578 CGATGCAGGCCTTGACGCAGCGTGCCAGGACTTCTTCGCGGGCCTTCT-CGTCGATCTGG 636
Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120
|| || ||||| || || | |||||||||||||| || ||||||||||| ||||||||
Sbjct 637 GGCGCAGGCGCCTCCTCGATGACCTTCTGGTGACGGCGCTGCAGCGAGCAGTCGCGGTCA 696
Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180
||||| | ||||| ||||||||| ||||| || || || |||||||||||||| ||
Sbjct 697 TAGAGGTGCACGGCGTTGCCCTGGCCATCGGAGAGCACCTGGACTTCCACGTGACGCGGA 756
Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240
||| ||| | || |||| ||||||||| | |||||| || |||||| |||||||
Sbjct 757 TTGCCGAGGAATTTCTCCATGTAGACCATGGAGTTGCCAAAGGCGGCGCCGGCTTCGGTC 816
Query 241 CGAGTCTGCTTG 252
| ||| |||||
Sbjct 817 TGGGTCAGCTTG 828
>seq236426
Length=348
Score = 132 bits (146), Expect = 7e-29
Identities = 121/153 (79%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116
||| ||||| ||||||||||||| || |||||||| ||||| |||| || || |||||
Sbjct 179 GCCAGGTGCTGGCGCTTCTTCCACGACTTTCTGGTGGCGACGCTGCATAGAACAGTCGCG 120
Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176
|||||||| | |||||| | ||||||||| || | |||||| || | ||| | |||||
Sbjct 119 TTCGCCCAGATAGATGGCATTGCCCTGGCCATCAGCCAGTACCTGGATTTCGATATGACG 60
Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCAT 209
|||||| ||| ||||| |||| ||| |||||
Sbjct 59 TGGGTTTTCCAGATACTTCTCCATGTAAACCAT 27
>seq331112
Length=2012
Score = 127 bits (140), Expect = 3e-27
Identities = 120/153 (78%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116
||||||||| ||||||||||||| || |||||||| || || |||| || || || ||
Sbjct 1773 GCCCGGTGCTGGCGCTTCTTCCACGACTTTCTGGTGGCGGCGCTGCATAGAACAGTCACG 1714
Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176
|||||||| | |||||||| ||||||||| || | ||| || || | ||| | ||||||
Sbjct 1713 CTCGCCCAGATAGATGGCGTTGCCCTGGCCATCAGCCAGAACCTGGATTTCGATGTGACG 1654
Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCAT 209
||| || ||| ||||| |||| ||| |||||
Sbjct 1653 TGGATTTTCCAGATACTTCTCCATGTACACCAT 1621
>seq474123
Length=434
Score = 122 bits (134), Expect = 1e-25
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116
|||||| ||||||||||| || | ||||||||||| || || |||| |||||| |||||
Sbjct 193 GCCCGGCGCCGGCGCTTCCTCGATCACCTTCTGGTGGCGGCGCTGCATCGAGCAGTCGCG 134
Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176
|||||||| || ||||| || |||||| ||| | || | ||||||||||||
Sbjct 133 TTCGCCCAGCCAGACGGCGTTTTTATGTTCGTCGGCCAGGATCTGGATTTCCACGTGACG 74
Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTC 236
|| || ||| ||||| |||| ||||| ||| |||||||| || ||| |||||
Sbjct 73 CGGATTTTCCAGATACTTCTCCATATAGACTTCCGGATTGCCGAAGGCGGTGCCGGCTTC 14
Query 237 GG 238
||
Sbjct 13 GG 12
>seq370001
Length=19830
Score = 114 bits (126), Expect = 2e-23
Identities = 117/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116
||| || || ||||| ||||| | || |||||||||||||| |||| || || || ||
Sbjct 15242 GCCTGGCGCTGGCGCCTCTTCGACCACTTTCTGGTGACGACGCTGCATGGAACAGTCACG 15183
Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176
|||||||| | |||||||| |||||| || |||| |||||| || | || | ||| ||
Sbjct 15182 TTCGCCCAGATAGATGGCGTTGCCCTGACCATCGGCCAGTACCTGAATCTCGATGTGGCG 15123
Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCAT 209
|| || ||| |||||||||| ||| |||||
Sbjct 15122 AGGATTCTCCAGATACTTTTCCATGTAAACCAT 15090
>seq359633
Length=225
Score = 107 bits (118), Expect = 3e-21
Identities = 100/126 (79%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60
||||||| || | ||||||||| ||| ||||| |||| || || | |||| | |
Sbjct 101 CGATGCAGGCATCGACGCAGCGCTGCAGCACTTCGGCGCGGGCCTTCT-CGTCGATCAGC 159
Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120
|| ||||| ||||||||||| |||||||||||||| || ||||||||||| |||||||||
Sbjct 160 GGAGCCGGGGCTTCTTCCAGCACCTTCTGGTGACGGCGCTGCAGCGAGCAGTCGCGGTCG 219
Query 121 CCCAGG 126
||||
Sbjct 220 TACAGG 225
>seq450282
Length=2798
Score = 104 bits (114), Expect = 3e-20
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116
||| || ||||||||||| || | ||||||||||| ||||| |||| ||| || |||||
Sbjct 1576 GCCGGGCGCCGGCGCTTCCTCGACGACCTTCTGGTGGCGACGCTGCATCGAACAGTCGCG 1517
Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176
|||||||| ||||| |||| ||||||||| |||| || || || | ||||| || ||
Sbjct 1516 CTCGCCCAGATGGATCGCGTTGCCCTGGCCATCGGCGAGGACCTGGATCTCCACATGGCG 1457
>seq475283
Length=1238
Score = 98.7 bits (108), Expect = 1e-18
Identities = 128/175 (73%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 70 GCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGG 129
|| |||||||| ||||||||||||||||| |||| ||||||||| || || ||||| ||
Sbjct 350 GCCTCTTCCAGAACCTTCTGGTGACGACGCTGCAACGAGCAATCACGCTCACCCAGATGC 291
Query 130 ATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGG 189
| || | ||| | ||| ||| | || ||||| || | ||| || || ||| |||
Sbjct 290 ACTGCATTGCCTTCGCCATCGCCGAAAACCTGCACCTCGATGTGGCGCGGCTTGCCGAGG 231
Query 190 TACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCG 242
|| ||||||| ||||| | || ||||||||| || ||||||||| ||
Sbjct 230 TATTTTTCCATATAGACGGCGTC--GTTGCCGAAAGCAGCAAGCGCTTCGGAACG 178
>seq391172
Length=278
Score = 98.7 bits (108), Expect = 1e-18
Identities = 128/174 (74%), Gaps = 5/174 (3%)
Strand=Plus/Plus
Query 71 CTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGA 130
|| || |||| ||||||||||| || || ||||||||||| ||||| |||||||| || |
Sbjct 89 CTCCTCCCAG-ACCTTCTGGTGGCGGCGCTGCAGCGAGCAGTCGCGCTCGCCCAGATGCA 147
Query 131 TGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGGT 190
||| | |||| ||||||| | || ||||| || | ||| || || ||| || |
Sbjct 148 CGGCCTTGCCCATGCCGTCGCCGAAGACCTGCACCTCGATGTGGCGCGGCTTGCCGAGAT 207
Query 191 ACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCG 242
|||| || || ||||| |||| || ||| || |||||| || |||| |||
Sbjct 208 ACTTCTCGAGATAGACCGCATC--GTCGCCAAAGGCGGCGCCGGCCTCGGCGCG 259
>seq320304
Length=1109
Score = 93.3 bits (102), Expect = 6e-17
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 51 GTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCA 110
||| || | ||| || ||||| || | |||||||||||||| || |||| ||||||
Sbjct 239 GTCGAGCCGCGGCGCGGGCGCGATCTCGACGACCTTCTGGTGACGGCGCTGCACCGAGCA 180
Query 111 ATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCAC 170
||||| ||| ||||||||| | | |||||||||||||| ||| | ||||| || |
Sbjct 179 GTCGCGCTCGAAGAGGTGGATGACCTCGCCCTGGCCGTCGGCCAGGATCTGCACCTCGAT 120
Query 171 GTGACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAA 221
||| || || | | || | || || | | | || |||||| ||||||
Sbjct 119 GTGGCGCGGCTCGACCACGGCCTGCTCGACGAACACGGTCGGGTCGCCGAA 69
>seq106020
Length=501
Score = 93.3 bits (102), Expect = 6e-17
Identities = 97/126 (77%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60
||||||| || | |||||| || || ||||| |||| || | | |||| | |
Sbjct 377 CGATGCAGGCATCGACGCAACGCTTGAGCACTTCGGCGCGGGCCTGCT-CGTCGATCAGC 435
Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120
|| ||||| ||||||||||| |||||||||||||| || ||||||||||| |||||||||
Sbjct 436 GGCGCCGGGGCTTCTTCCAGCACCTTCTGGTGACGGCGCTGCAGCGAGCAGTCGCGGTCG 495
Query 121 CCCAGG 126
||||
Sbjct 496 TACAGG 501
>seq448926
Length=390
Score = 87.8 bits (96), Expect = 3e-15
Identities = 123/171 (72%), Gaps = 4/171 (2%)
Strand=Plus/Minus
Query 68 GCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGT 127
|||| |||||| ||||||||||| || || || |||||||| ||||| ||||| || |
Sbjct 169 GCGCCTCTTCCCAGACCTTCTGGTGGCGGCGCTGGAGCGAGCAGTCGCGCTCGCCGAGAT 110
Query 128 GGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCA 187
|||| |||| |||| |||||| | || ||||| || | || || || |||| |
Sbjct 109 GGATCGCGTTGCCCATCCCGTCGCCGAAGACCTGCACCTCGATATGGCGCGGCTTGGCGA 50
Query 188 GGTACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTC 236
| ||||| || | ||||| | || || |||||| ||||| |||||
Sbjct 49 GATACTTCTCGATATAGACGGCGTC--GTCGCCGAAGGCCGCGCCGGCTTC 1
>seq298836
Length=222
Score = 82.4 bits (90), Expect = 1e-13
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 49 TCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAG 108
||||| || ||| | |||||| ||||| | ||||||||||| || || |||||||||
Sbjct 71 TCGTCGAGCAGCGGCGACGGCGCCTCTTCGATGACCTTCTGGTGCCGGCGCTGCAGCGAG 130
Query 109 CAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCC 168
|| || || ||||| ||||| | | ||| || || | |||| || || ||||| ||
Sbjct 131 CACTCCCGCTCGCCGAGGTGCACGACGTTCCCGTGCGCATCGGCGAGCACCTGCACCTCG 190
Query 169 ACGTGACGTGGGTTG 183
| ||| || ||| ||
Sbjct 191 ATGTGCCGCGGGGTG 205
>seq251291
Length=219
Score = 82.4 bits (90), Expect = 1e-13
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126
|||||||||||||| |||||||||||||| || |||| |||||| ||||| ||| |||
Sbjct 1 GGCGCTTCTTCCAGCACCTTCTGGTGACGCCGCTGCACCGAGCAGTCGCGCTCGAACAGA 60
Query 127 TGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGG 179
|| | ||| ||| |||| |||| | || |||| ||||| || || ||
Sbjct 61 TGCACCACGTTGCCGTGGCGGTCGCCGAAGACCTGCATCTCCACATGGCGCGG 113
>seq101943
Length=268
Score = 82.4 bits (90), Expect = 1e-13
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 55 AGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCG 114
|| || || |||||||| || || | |||||||||||||| || || | ||||||||||
Sbjct 249 AGTCCGGGAGCCGGCGCCTCCTCGACCACCTTCTGGTGACGGCGCTGAATCGAGCAATCG 190
Query 115 CGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGA 174
|| ||| ||||| | | || ||| || ||||||| | || || | |||||||||
Sbjct 189 CGCTCGTTCAGGTACAGGCAGTTGCCGTGCCCGTCGGCAAACACCTGAATCTCCACGTGA 130
Query 175 CGTGG 179
|| ||
Sbjct 129 CGCGG 125
>seq440701
Length=230
Score = 77.0 bits (84), Expect = 5e-12
Identities = 78/102 (76%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 82 ACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGATGGCGTGGCCC 141
||||||||||| || || |||| |||||| ||||| ||| ||||||||| ||| |||
Sbjct 55 ACCTTCTGGTGCCGGCGCTGCACCGAGCAGTCGCGCTCGAAGAGGTGGATGACGTTGCCG 114
Query 142 TGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTG 183
|||||||| || | ||||| || | ||| || ||||||
Sbjct 115 GAGCCGTCGGCGAGGATCTGCACCTCGATGTGGCGCGGGTTG 156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 732252279490
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