Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq256835 203 5e-50 seq236426 132 7e-29 seq331112 127 3e-27 seq474123 122 1e-25 seq370001 114 2e-23 seq359633 107 3e-21 seq450282 104 3e-20 seq475283 98.7 1e-18 seq391172 98.7 1e-18 seq320304 93.3 6e-17 seq106020 93.3 6e-17 seq448926 87.8 3e-15 seq298836 82.4 1e-13 seq251291 82.4 1e-13 seq101943 82.4 1e-13 seq440701 77.0 5e-12 >seq256835 Length=1256 Score = 203 bits (224), Expect = 5e-50 Identities = 197/252 (78%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||| |||||||||||||| ||||||||||||||||| || || | |||| | Sbjct 578 CGATGCAGGCCTTGACGCAGCGTGCCAGGACTTCTTCGCGGGCCTTCT-CGTCGATCTGG 636 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 || || ||||| || || | |||||||||||||| || ||||||||||| |||||||| Sbjct 637 GGCGCAGGCGCCTCCTCGATGACCTTCTGGTGACGGCGCTGCAGCGAGCAGTCGCGGTCA 696 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 ||||| | ||||| ||||||||| ||||| || || || |||||||||||||| || Sbjct 697 TAGAGGTGCACGGCGTTGCCCTGGCCATCGGAGAGCACCTGGACTTCCACGTGACGCGGA 756 Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240 ||| ||| | || |||| ||||||||| | |||||| || |||||| ||||||| Sbjct 757 TTGCCGAGGAATTTCTCCATGTAGACCATGGAGTTGCCAAAGGCGGCGCCGGCTTCGGTC 816 Query 241 CGAGTCTGCTTG 252 | ||| ||||| Sbjct 817 TGGGTCAGCTTG 828 >seq236426 Length=348 Score = 132 bits (146), Expect = 7e-29 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||| ||||| ||||||||||||| || |||||||| ||||| |||| || || ||||| Sbjct 179 GCCAGGTGCTGGCGCTTCTTCCACGACTTTCTGGTGGCGACGCTGCATAGAACAGTCGCG 120 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| | |||||| | ||||||||| || | |||||| || | ||| | ||||| Sbjct 119 TTCGCCCAGATAGATGGCATTGCCCTGGCCATCAGCCAGTACCTGGATTTCGATATGACG 60 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCAT 209 |||||| ||| ||||| |||| ||| ||||| Sbjct 59 TGGGTTTTCCAGATACTTCTCCATGTAAACCAT 27 >seq331112 Length=2012 Score = 127 bits (140), Expect = 3e-27 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||||||||| ||||||||||||| || |||||||| || || |||| || || || || Sbjct 1773 GCCCGGTGCTGGCGCTTCTTCCACGACTTTCTGGTGGCGGCGCTGCATAGAACAGTCACG 1714 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| | |||||||| ||||||||| || | ||| || || | ||| | |||||| Sbjct 1713 CTCGCCCAGATAGATGGCGTTGCCCTGGCCATCAGCCAGAACCTGGATTTCGATGTGACG 1654 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCAT 209 ||| || ||| ||||| |||| ||| ||||| Sbjct 1653 TGGATTTTCCAGATACTTCTCCATGTACACCAT 1621 >seq474123 Length=434 Score = 122 bits (134), Expect = 1e-25 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 |||||| ||||||||||| || | ||||||||||| || || |||| |||||| ||||| Sbjct 193 GCCCGGCGCCGGCGCTTCCTCGATCACCTTCTGGTGGCGGCGCTGCATCGAGCAGTCGCG 134 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| || ||||| || |||||| ||| | || | |||||||||||| Sbjct 133 TTCGCCCAGCCAGACGGCGTTTTTATGTTCGTCGGCCAGGATCTGGATTTCCACGTGACG 74 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTC 236 || || ||| ||||| |||| ||||| ||| |||||||| || ||| ||||| Sbjct 73 CGGATTTTCCAGATACTTCTCCATATAGACTTCCGGATTGCCGAAGGCGGTGCCGGCTTC 14 Query 237 GG 238 || Sbjct 13 GG 12 >seq370001 Length=19830 Score = 114 bits (126), Expect = 2e-23 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||| || || ||||| ||||| | || |||||||||||||| |||| || || || || Sbjct 15242 GCCTGGCGCTGGCGCCTCTTCGACCACTTTCTGGTGACGACGCTGCATGGAACAGTCACG 15183 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| | |||||||| |||||| || |||| |||||| || | || | ||| || Sbjct 15182 TTCGCCCAGATAGATGGCGTTGCCCTGACCATCGGCCAGTACCTGAATCTCGATGTGGCG 15123 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCAT 209 || || ||| |||||||||| ||| ||||| Sbjct 15122 AGGATTCTCCAGATACTTTTCCATGTAAACCAT 15090 >seq359633 Length=225 Score = 107 bits (118), Expect = 3e-21 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||| || | ||||||||| ||| ||||| |||| || || | |||| | | Sbjct 101 CGATGCAGGCATCGACGCAGCGCTGCAGCACTTCGGCGCGGGCCTTCT-CGTCGATCAGC 159 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 || ||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||| Sbjct 160 GGAGCCGGGGCTTCTTCCAGCACCTTCTGGTGACGGCGCTGCAGCGAGCAGTCGCGGTCG 219 Query 121 CCCAGG 126 |||| Sbjct 220 TACAGG 225 >seq450282 Length=2798 Score = 104 bits (114), Expect = 3e-20 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||| || ||||||||||| || | ||||||||||| ||||| |||| ||| || ||||| Sbjct 1576 GCCGGGCGCCGGCGCTTCCTCGACGACCTTCTGGTGGCGACGCTGCATCGAACAGTCGCG 1517 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| ||||| |||| ||||||||| |||| || || || | ||||| || || Sbjct 1516 CTCGCCCAGATGGATCGCGTTGCCCTGGCCATCGGCGAGGACCTGGATCTCCACATGGCG 1457 >seq475283 Length=1238 Score = 98.7 bits (108), Expect = 1e-18 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 70 GCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGG 129 || |||||||| ||||||||||||||||| |||| ||||||||| || || ||||| || Sbjct 350 GCCTCTTCCAGAACCTTCTGGTGACGACGCTGCAACGAGCAATCACGCTCACCCAGATGC 291 Query 130 ATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGG 189 | || | ||| | ||| ||| | || ||||| || | ||| || || ||| ||| Sbjct 290 ACTGCATTGCCTTCGCCATCGCCGAAAACCTGCACCTCGATGTGGCGCGGCTTGCCGAGG 231 Query 190 TACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCG 242 || ||||||| ||||| | || ||||||||| || ||||||||| || Sbjct 230 TATTTTTCCATATAGACGGCGTC--GTTGCCGAAAGCAGCAAGCGCTTCGGAACG 178 >seq391172 Length=278 Score = 98.7 bits (108), Expect = 1e-18 Identities = 128/174 (74%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 71 CTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGA 130 || || |||| ||||||||||| || || ||||||||||| ||||| |||||||| || | Sbjct 89 CTCCTCCCAG-ACCTTCTGGTGGCGGCGCTGCAGCGAGCAGTCGCGCTCGCCCAGATGCA 147 Query 131 TGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGGT 190 ||| | |||| ||||||| | || ||||| || | ||| || || ||| || | Sbjct 148 CGGCCTTGCCCATGCCGTCGCCGAAGACCTGCACCTCGATGTGGCGCGGCTTGCCGAGAT 207 Query 191 ACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCG 242 |||| || || ||||| |||| || ||| || |||||| || |||| ||| Sbjct 208 ACTTCTCGAGATAGACCGCATC--GTCGCCAAAGGCGGCGCCGGCCTCGGCGCG 259 >seq320304 Length=1109 Score = 93.3 bits (102), Expect = 6e-17 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51 GTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCA 110 ||| || | ||| || ||||| || | |||||||||||||| || |||| |||||| Sbjct 239 GTCGAGCCGCGGCGCGGGCGCGATCTCGACGACCTTCTGGTGACGGCGCTGCACCGAGCA 180 Query 111 ATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCAC 170 ||||| ||| ||||||||| | | |||||||||||||| ||| | ||||| || | Sbjct 179 GTCGCGCTCGAAGAGGTGGATGACCTCGCCCTGGCCGTCGGCCAGGATCTGCACCTCGAT 120 Query 171 GTGACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAA 221 ||| || || | | || | || || | | | || |||||| |||||| Sbjct 119 GTGGCGCGGCTCGACCACGGCCTGCTCGACGAACACGGTCGGGTCGCCGAA 69 >seq106020 Length=501 Score = 93.3 bits (102), Expect = 6e-17 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||| || | |||||| || || ||||| |||| || | | |||| | | Sbjct 377 CGATGCAGGCATCGACGCAACGCTTGAGCACTTCGGCGCGGGCCTGCT-CGTCGATCAGC 435 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 || ||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||| Sbjct 436 GGCGCCGGGGCTTCTTCCAGCACCTTCTGGTGACGGCGCTGCAGCGAGCAGTCGCGGTCG 495 Query 121 CCCAGG 126 |||| Sbjct 496 TACAGG 501 >seq448926 Length=390 Score = 87.8 bits (96), Expect = 3e-15 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 68 GCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGT 127 |||| |||||| ||||||||||| || || || |||||||| ||||| ||||| || | Sbjct 169 GCGCCTCTTCCCAGACCTTCTGGTGGCGGCGCTGGAGCGAGCAGTCGCGCTCGCCGAGAT 110 Query 128 GGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCA 187 |||| |||| |||| |||||| | || ||||| || | || || || |||| | Sbjct 109 GGATCGCGTTGCCCATCCCGTCGCCGAAGACCTGCACCTCGATATGGCGCGGCTTGGCGA 50 Query 188 GGTACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTC 236 | ||||| || | ||||| | || || |||||| ||||| ||||| Sbjct 49 GATACTTCTCGATATAGACGGCGTC--GTCGCCGAAGGCCGCGCCGGCTTC 1 >seq298836 Length=222 Score = 82.4 bits (90), Expect = 1e-13 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 49 TCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAG 108 ||||| || ||| | |||||| ||||| | ||||||||||| || || ||||||||| Sbjct 71 TCGTCGAGCAGCGGCGACGGCGCCTCTTCGATGACCTTCTGGTGCCGGCGCTGCAGCGAG 130 Query 109 CAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCC 168 || || || ||||| ||||| | | ||| || || | |||| || || ||||| || Sbjct 131 CACTCCCGCTCGCCGAGGTGCACGACGTTCCCGTGCGCATCGGCGAGCACCTGCACCTCG 190 Query 169 ACGTGACGTGGGTTG 183 | ||| || ||| || Sbjct 191 ATGTGCCGCGGGGTG 205 >seq251291 Length=219 Score = 82.4 bits (90), Expect = 1e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126 |||||||||||||| |||||||||||||| || |||| |||||| ||||| ||| ||| Sbjct 1 GGCGCTTCTTCCAGCACCTTCTGGTGACGCCGCTGCACCGAGCAGTCGCGCTCGAACAGA 60 Query 127 TGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGG 179 || | ||| ||| |||| |||| | || |||| ||||| || || || Sbjct 61 TGCACCACGTTGCCGTGGCGGTCGCCGAAGACCTGCATCTCCACATGGCGCGG 113 >seq101943 Length=268 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 55 AGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCG 114 || || || |||||||| || || | |||||||||||||| || || | |||||||||| Sbjct 249 AGTCCGGGAGCCGGCGCCTCCTCGACCACCTTCTGGTGACGGCGCTGAATCGAGCAATCG 190 Query 115 CGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGA 174 || ||| ||||| | | || ||| || ||||||| | || || | ||||||||| Sbjct 189 CGCTCGTTCAGGTACAGGCAGTTGCCGTGCCCGTCGGCAAACACCTGAATCTCCACGTGA 130 Query 175 CGTGG 179 || || Sbjct 129 CGCGG 125 >seq440701 Length=230 Score = 77.0 bits (84), Expect = 5e-12 Identities = 78/102 (76%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 82 ACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGATGGCGTGGCCC 141 ||||||||||| || || |||| |||||| ||||| ||| ||||||||| ||| ||| Sbjct 55 ACCTTCTGGTGCCGGCGCTGCACCGAGCAGTCGCGCTCGAAGAGGTGGATGACGTTGCCG 114 Query 142 TGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTG 183 |||||||| || | ||||| || | ||| || |||||| Sbjct 115 GAGCCGTCGGCGAGGATCTGCACCTCGATGTGGCGCGGGTTG 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 732252279490