Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001187.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
seq173899 232 1e-58
seq458476 214 3e-53
seq469739 179 5e-43
seq164279 78.8 1e-12
seq452141 75.2 2e-11
seq317122 75.2 2e-11
>seq173899
Length=201
Score = 232 bits (256), Expect = 1e-58
Identities = 164/184 (89%), Gaps = 3/184 (2%)
Strand=Plus/Plus
Query 3 AGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGAT 62
||||||| ||| |||||||| ||||||||||| ||||||||||||||| || ||||||||
Sbjct 15 AGGCGCAGGCGATACAGGCGGCGCTTGAGCTT-GCCCAGGTACTGCATACGGGCGACGAT 73
Query 63 TTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAG 122
||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct 74 TTCCTGGCCGGTGTAGCAGCCCTTCTTGAAGCTCACGCCGCCTACGGCCTGCAGATTGAT 133
Query 123 CATTTGCGGGATGAACAGCTCGCGGGT-TTGCGCCATGACCTGGCCGATGCCGGCGCGGG 181
||| ||||||||||||||||||||||| ||| | | |||||||| ||||||||||||
Sbjct 134 CATCTGCGGGATGAACAGCTCGCGGGTGGTGC-CGGTCACCTGGCCAATGCCGGCGCGGA 192
Query 182 TCTG 185
||||
Sbjct 193 TCTG 196
>seq458476
Length=4081
Score = 214 bits (236), Expect = 3e-53
Identities = 168/197 (85%), Gaps = 3/197 (2%)
Strand=Plus/Minus
Query 20 GCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGATTTCCTGGCCGGTGTAGC 79
||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4081 GCGGCGCTTGAGCTT-GCCCAGGTACTGCATGCGGGCGACGATTTCCTGGCCGGTGTAGC 4023
Query 80 AGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAGCATTTGCGGGATGAACA 139
|||| ||||||||||| || ||||| |||||||||||||||| ||| |||||||||||||
Sbjct 4022 AGCCCTTCTTGAAGCTCACACCGCCCACGGCCTGCAGGTTGATCATCTGCGGGATGAACA 3963
Query 140 GCTCGCGGGT-TTGCGCCATGACCTGGCCGATGCCGGCGCGGGTCTGGCCCAGCAGCCAT 198
|||||||||| ||| | | |||||||| ||||| || ||| |||| | |||| |||
Sbjct 3962 GCTCGCGGGTCGTGC-CGGTCACCTGGCCAATGCCCGCACGGATCTGTGCGAGCAACCAG 3904
Query 199 TCGTTCAGACCTGCTTC 215
|| || || | |||||
Sbjct 3903 TCATTGAGGCTGGCTTC 3887
>seq469739
Length=3016
Score = 179 bits (198), Expect = 5e-43
Identities = 158/193 (82%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 11 GCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGATTTCCTGGC 70
||| || || || ||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1092 GCGATAGAGACGCCGCTTGAGCTT-GCCCAGGTACTGCATGCGCGCGACGATCTCCTGGC 1034
Query 71 CGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAGCATTTGCG 130
|||||||||| || || ||||| ||||| | | |||||||| |||| ||| ||||
Sbjct 1033 CGGTGTAGCAACCCTTGCGAAAGCTCACGCCATCCAGCGCCTGCAGATTGATCATCTGCG 974
Query 131 GGATGAACAGCTCGCGGGTTTGCGCC-ATGACCTGGCCGATGCCGGCGCGGGTCTGGCCC 189
||| ||||||||||||||| ||||| | |||||||| | ||| || || |||| ||
Sbjct 973 GGACGAACAGCTCGCGGGTC-GCGCCGAATACCTGGCCCACGCCCGCTCGTACCTGGGCC 915
Query 190 AGCAGCCATTCGT 202
|||||||||||||
Sbjct 914 AGCAGCCATTCGT 902
>seq164279
Length=396
Score = 78.8 bits (86), Expect = 1e-12
Identities = 73/93 (78%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 52 CGCGCGACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCC 111
||||| || || ||||| ||||| ||||| |||||||| ||||||| |||||| | |||
Sbjct 201 CGCGCCACCATCTCCTGTCCGGTATAGCACCCTTTCTTAAAGCTGATGCCGCCCAGCGCC 142
Query 112 TGCAGGTTGAGCATTTGCGGGATGAACAGCTCG 144
||||||||| | ||||| || ||| || ||
Sbjct 141 TGCAGGTTGGTCGCCTGCGGAATAAACTGCGCG 109
>seq452141
Length=510
Score = 75.2 bits (82), Expect = 2e-11
Identities = 51/56 (91%), Gaps = 1/56 (2%)
Strand=Plus/Minus
Query 5 GCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACG 60
||||| ||| |||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 55 GCGCAGGCGATACAGGCGGCGCTTGAGCTT-GCCCAGGTACTGCATGCGGGCGACG 1
>seq317122
Length=255
Score = 75.2 bits (82), Expect = 2e-11
Identities = 61/73 (84%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 24 CGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGATTTCCTGGCCGGTGTAGCAGCC 83
|||||| || ||||| ||| | || ||||||| |||||||||||||| | |||||||||
Sbjct 98 CGCTTG-GCCTTGCCGAGGAAGTGTGTGCGCGCCACGATTTCCTGGCCCGGGTAGCAGCC 156
Query 84 TTTCTTGAAGCTG 96
||||||| ||||
Sbjct 157 CTTCTTGACGCTG 169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 732252279490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |