Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001187.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq173899 232 1e-58 seq458476 214 3e-53 seq469739 179 5e-43 seq164279 78.8 1e-12 seq452141 75.2 2e-11 seq317122 75.2 2e-11 >seq173899 Length=201 Score = 232 bits (256), Expect = 1e-58 Identities = 164/184 (89%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 3 AGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGAT 62 ||||||| ||| |||||||| ||||||||||| ||||||||||||||| || |||||||| Sbjct 15 AGGCGCAGGCGATACAGGCGGCGCTTGAGCTT-GCCCAGGTACTGCATACGGGCGACGAT 73 Query 63 TTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAG 122 ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct 74 TTCCTGGCCGGTGTAGCAGCCCTTCTTGAAGCTCACGCCGCCTACGGCCTGCAGATTGAT 133 Query 123 CATTTGCGGGATGAACAGCTCGCGGGT-TTGCGCCATGACCTGGCCGATGCCGGCGCGGG 181 ||| ||||||||||||||||||||||| ||| | | |||||||| |||||||||||| Sbjct 134 CATCTGCGGGATGAACAGCTCGCGGGTGGTGC-CGGTCACCTGGCCAATGCCGGCGCGGA 192 Query 182 TCTG 185 |||| Sbjct 193 TCTG 196 >seq458476 Length=4081 Score = 214 bits (236), Expect = 3e-53 Identities = 168/197 (85%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 20 GCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGATTTCCTGGCCGGTGTAGC 79 ||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4081 GCGGCGCTTGAGCTT-GCCCAGGTACTGCATGCGGGCGACGATTTCCTGGCCGGTGTAGC 4023 Query 80 AGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAGCATTTGCGGGATGAACA 139 |||| ||||||||||| || ||||| |||||||||||||||| ||| ||||||||||||| Sbjct 4022 AGCCCTTCTTGAAGCTCACACCGCCCACGGCCTGCAGGTTGATCATCTGCGGGATGAACA 3963 Query 140 GCTCGCGGGT-TTGCGCCATGACCTGGCCGATGCCGGCGCGGGTCTGGCCCAGCAGCCAT 198 |||||||||| ||| | | |||||||| ||||| || ||| |||| | |||| ||| Sbjct 3962 GCTCGCGGGTCGTGC-CGGTCACCTGGCCAATGCCCGCACGGATCTGTGCGAGCAACCAG 3904 Query 199 TCGTTCAGACCTGCTTC 215 || || || | ||||| Sbjct 3903 TCATTGAGGCTGGCTTC 3887 >seq469739 Length=3016 Score = 179 bits (198), Expect = 5e-43 Identities = 158/193 (82%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 11 GCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGATTTCCTGGC 70 ||| || || || ||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 1092 GCGATAGAGACGCCGCTTGAGCTT-GCCCAGGTACTGCATGCGCGCGACGATCTCCTGGC 1034 Query 71 CGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAGCATTTGCG 130 |||||||||| || || ||||| ||||| | | |||||||| |||| ||| |||| Sbjct 1033 CGGTGTAGCAACCCTTGCGAAAGCTCACGCCATCCAGCGCCTGCAGATTGATCATCTGCG 974 Query 131 GGATGAACAGCTCGCGGGTTTGCGCC-ATGACCTGGCCGATGCCGGCGCGGGTCTGGCCC 189 ||| ||||||||||||||| ||||| | |||||||| | ||| || || |||| || Sbjct 973 GGACGAACAGCTCGCGGGTC-GCGCCGAATACCTGGCCCACGCCCGCTCGTACCTGGGCC 915 Query 190 AGCAGCCATTCGT 202 ||||||||||||| Sbjct 914 AGCAGCCATTCGT 902 >seq164279 Length=396 Score = 78.8 bits (86), Expect = 1e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 52 CGCGCGACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCC 111 ||||| || || ||||| ||||| ||||| |||||||| ||||||| |||||| | ||| Sbjct 201 CGCGCCACCATCTCCTGTCCGGTATAGCACCCTTTCTTAAAGCTGATGCCGCCCAGCGCC 142 Query 112 TGCAGGTTGAGCATTTGCGGGATGAACAGCTCG 144 ||||||||| | ||||| || ||| || || Sbjct 141 TGCAGGTTGGTCGCCTGCGGAATAAACTGCGCG 109 >seq452141 Length=510 Score = 75.2 bits (82), Expect = 2e-11 Identities = 51/56 (91%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 5 GCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACG 60 ||||| ||| |||||||| ||||||||||| |||||||||||||||||| |||||| Sbjct 55 GCGCAGGCGATACAGGCGGCGCTTGAGCTT-GCCCAGGTACTGCATGCGGGCGACG 1 >seq317122 Length=255 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/73 (84%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 24 CGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGATTTCCTGGCCGGTGTAGCAGCC 83 |||||| || ||||| ||| | || ||||||| |||||||||||||| | ||||||||| Sbjct 98 CGCTTG-GCCTTGCCGAGGAAGTGTGTGCGCGCCACGATTTCCTGGCCCGGGTAGCAGCC 156 Query 84 TTTCTTGAAGCTG 96 ||||||| |||| Sbjct 157 CTTCTTGACGCTG 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 732252279490