Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001212.1
Length=311
Score E
Sequences producing significant alignments: (Bits) Value
seq466554 212 1e-52
seq295426 89.7 9e-16
seq236193 87.8 3e-15
>seq466554
Length=1142
Score = 212 bits (234), Expect = 1e-52
Identities = 222/292 (76%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 15 TTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTGGCTGGTCACCCAGT 74
|||||||||| ||||||| | | ||| ||||||||||||||||||||| | |||
Sbjct 189 TTCACCCGCGGTTCTGGCCGCTGTGGGCCGGGCTCGGCCTGCTGTGGCTGACCGTGCAGC 248
Query 75 TGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGGGATGTACCGTGTGG 134
|||||||| | |||||| || | || || ||||| | |||||| | | ||
Sbjct 249 TGCCCTACGGCGCGCTGCTGCGTCTGGGCCGTGGCCTGGGCTGGTTGATGTATCACGCGG 308
Query 135 CCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTTCCCGGAAAAATCCG 194
||||| || || || || ||| |||| ||||||||||||||||||||| | | | |
Sbjct 309 CCGGCTCGCGTCGGCGTATTGCCACGCGCAACCTGGAACTGTGCTTCCCGCACATGCCGG 368
Query 195 CGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGGCATCGCCTTCTTTG 254
| | |||| | | | |||| || || || || ||||||||||||||||||||||| |
Sbjct 369 CAGACAAGCGCGAGCGTCTGCTCAAGGAGAATTTCGCCTCCACCGGCATCGCCTTCTTCG 428
Query 255 AGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCTGGCCCA 306
||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 429 AGATGGCCATGAGCTGGTGGTGGCCGCGCCACAAGCTGGCGCGCCTGGCCCA 480
>seq295426
Length=222
Score = 89.7 bits (98), Expect = 9e-16
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 15 TTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTGGCTGGTCACCCAGT 74
|||||||||| ||||||| | | ||| ||||| || ||||||||||| | || |
Sbjct 54 TTCACCCGCGCTTCTGGCCGCTGTGGGCTGGGCTTGGGTTGCTGTGGCTGACCGTGCAAT 113
Query 75 TGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGGGATGTACCGTGTGG 134
| |||||| | |||||| || | | || || ||||| | |||||| | ||
Sbjct 114 TACCCTACGGCGCGCTGCTGCGCCTGGGCCGTGGTCTGGGCTGGCTGATGTATCACACGG 173
Query 135 CCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTTCCC 183
||||| || || || |||||| |||| |||||||||||||| |||||
Sbjct 174 CCGGCTCGCGTCGGCGTATCGCCACGCGCAACCTGGAACTGTGTTTCCC 222
>seq236193
Length=758
Score = 87.8 bits (96), Expect = 3e-15
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 224 AACTTTGCCTCCACCGGCATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGC 283
||||| ||| || || ||| ||| | | |||||||||||||||||||||||| ||||
Sbjct 40 AACTTCGCCAGCAGCGCCATGGCCCTGCTGGAGATGGCCATGAGCTGGTGGTGGCCGCGG 99
Query 284 CAGCGCCTGGCGCGCCTGGCCCA 306
||||||||||| || ||||||||
Sbjct 100 CAGCGCCTGGCCCGGCTGGCCCA 122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 888107202144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |