Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001212.1 Length=311 Score E Sequences producing significant alignments: (Bits) Value seq466554 212 1e-52 seq295426 89.7 9e-16 seq236193 87.8 3e-15 >seq466554 Length=1142 Score = 212 bits (234), Expect = 1e-52 Identities = 222/292 (76%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 15 TTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTGGCTGGTCACCCAGT 74 |||||||||| ||||||| | | ||| ||||||||||||||||||||| | ||| Sbjct 189 TTCACCCGCGGTTCTGGCCGCTGTGGGCCGGGCTCGGCCTGCTGTGGCTGACCGTGCAGC 248 Query 75 TGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGGGATGTACCGTGTGG 134 |||||||| | |||||| || | || || ||||| | |||||| | | || Sbjct 249 TGCCCTACGGCGCGCTGCTGCGTCTGGGCCGTGGCCTGGGCTGGTTGATGTATCACGCGG 308 Query 135 CCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTTCCCGGAAAAATCCG 194 ||||| || || || || ||| |||| ||||||||||||||||||||| | | | | Sbjct 309 CCGGCTCGCGTCGGCGTATTGCCACGCGCAACCTGGAACTGTGCTTCCCGCACATGCCGG 368 Query 195 CGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGGCATCGCCTTCTTTG 254 | | |||| | | | |||| || || || || ||||||||||||||||||||||| | Sbjct 369 CAGACAAGCGCGAGCGTCTGCTCAAGGAGAATTTCGCCTCCACCGGCATCGCCTTCTTCG 428 Query 255 AGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCTGGCCCA 306 ||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 429 AGATGGCCATGAGCTGGTGGTGGCCGCGCCACAAGCTGGCGCGCCTGGCCCA 480 >seq295426 Length=222 Score = 89.7 bits (98), Expect = 9e-16 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 15 TTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTGGCTGGTCACCCAGT 74 |||||||||| ||||||| | | ||| ||||| || ||||||||||| | || | Sbjct 54 TTCACCCGCGCTTCTGGCCGCTGTGGGCTGGGCTTGGGTTGCTGTGGCTGACCGTGCAAT 113 Query 75 TGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGGGATGTACCGTGTGG 134 | |||||| | |||||| || | | || || ||||| | |||||| | || Sbjct 114 TACCCTACGGCGCGCTGCTGCGCCTGGGCCGTGGTCTGGGCTGGCTGATGTATCACACGG 173 Query 135 CCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTTCCC 183 ||||| || || || |||||| |||| |||||||||||||| ||||| Sbjct 174 CCGGCTCGCGTCGGCGTATCGCCACGCGCAACCTGGAACTGTGTTTCCC 222 >seq236193 Length=758 Score = 87.8 bits (96), Expect = 3e-15 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 224 AACTTTGCCTCCACCGGCATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGC 283 ||||| ||| || || ||| ||| | | |||||||||||||||||||||||| |||| Sbjct 40 AACTTCGCCAGCAGCGCCATGGCCCTGCTGGAGATGGCCATGAGCTGGTGGTGGCCGCGG 99 Query 284 CAGCGCCTGGCGCGCCTGGCCCA 306 ||||||||||| || |||||||| Sbjct 100 CAGCGCCTGGCCCGGCTGGCCCA 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 888107202144