Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001250.1
Length=167
Score E
Sequences producing significant alignments: (Bits) Value
seq524648 105 6e-21
seq58750 105 6e-21
seq419403 80.6 2e-13
>seq524648
Length=1068
Score = 105 bits (116), Expect = 6e-21
Identities = 123/161 (76%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60
|||| || |||||||||||| ||||||| || |||||||||||||| ||| |||||||||
Sbjct 160 TCGATCCGAACCTGTGCACCGAGTGCGTGGGCCACTACGACGAACCCCAGTGCCAGCAGG 101
Query 61 TATCGCCCGGTGGATTCGCATTTCCGCTGGACGAGGCACACCCCGAGACGGAAGAGCAGT 120
| | |||||||||| | ||| | || || |||||| || |||||| | ||||||
Sbjct 100 TCT-GCCCGGTGGACT-GCA-TCCCCCTCGACGAGAACCATGTCGAGACCAAGGAGCAG- 45
Query 121 TTGATGGAGAAGTACCGCAAGATTACCGGTAAGGCCTAAGC 161
|| || ||||| | ||||| | ||| |||||| |||
Sbjct 44 CTGCACGACAAGTATCTGAAGATCAGCGGCCAGGCCTGAGC 4
>seq58750
Length=447
Score = 105 bits (116), Expect = 6e-21
Identities = 123/159 (77%), Gaps = 8/159 (5%)
Strand=Plus/Plus
Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60
||||||| |||||||||||| | |||||||| ||||||||||| |||||| |||||||||
Sbjct 60 TCGACCCCAACCTGTGCACCGAATGCGTCGGCCACTACGACGAGCCGCAGTGCCAGCAGG 119
Query 61 TATCGCCCGGTGGATTCGCATTTCCGCTGGACGAGGCACACCCCGAGACGGAAGAGCAGT 120
| | ||||||| || | ||| | || || |||||| || ||||| | ||||||
Sbjct 120 TCT-GCCCGGTAGACT-GCA-TCCCCCTCGACGAGAACAACGTCGAGAGCAAGGAGCAG- 175
Query 121 TTGATGGAGAAGTACCGCAAG--ATTACCGGTAAGGCCT 157
||||||| |||||| ||| | ||||| |||||||
Sbjct 176 TTGATGGCCAAGTAC--AAAGCCCTCACCGGCAAGGCCT 212
>seq419403
Length=2586
Score = 80.6 bits (88), Expect = 2e-13
Identities = 61/71 (86%), Gaps = 1/71 (1%)
Strand=Plus/Minus
Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60
|||| || |||||||||||| | ||||| || ||||||||||| |||||| |||||||||
Sbjct 2527 TCGATCCCAACCTGTGCACCGAATGCGTGGGCCACTACGACGAGCCGCAGTGCCAGCAGG 2468
Query 61 TATCGCCCGGT 71
| | |||||||
Sbjct 2467 TCT-GCCCGGT 2458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432983956568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |