Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001250.1 Length=167 Score E Sequences producing significant alignments: (Bits) Value seq524648 105 6e-21 seq58750 105 6e-21 seq419403 80.6 2e-13 >seq524648 Length=1068 Score = 105 bits (116), Expect = 6e-21 Identities = 123/161 (76%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60 |||| || |||||||||||| ||||||| || |||||||||||||| ||| ||||||||| Sbjct 160 TCGATCCGAACCTGTGCACCGAGTGCGTGGGCCACTACGACGAACCCCAGTGCCAGCAGG 101 Query 61 TATCGCCCGGTGGATTCGCATTTCCGCTGGACGAGGCACACCCCGAGACGGAAGAGCAGT 120 | | |||||||||| | ||| | || || |||||| || |||||| | |||||| Sbjct 100 TCT-GCCCGGTGGACT-GCA-TCCCCCTCGACGAGAACCATGTCGAGACCAAGGAGCAG- 45 Query 121 TTGATGGAGAAGTACCGCAAGATTACCGGTAAGGCCTAAGC 161 || || ||||| | ||||| | ||| |||||| ||| Sbjct 44 CTGCACGACAAGTATCTGAAGATCAGCGGCCAGGCCTGAGC 4 >seq58750 Length=447 Score = 105 bits (116), Expect = 6e-21 Identities = 123/159 (77%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60 ||||||| |||||||||||| | |||||||| ||||||||||| |||||| ||||||||| Sbjct 60 TCGACCCCAACCTGTGCACCGAATGCGTCGGCCACTACGACGAGCCGCAGTGCCAGCAGG 119 Query 61 TATCGCCCGGTGGATTCGCATTTCCGCTGGACGAGGCACACCCCGAGACGGAAGAGCAGT 120 | | ||||||| || | ||| | || || |||||| || ||||| | |||||| Sbjct 120 TCT-GCCCGGTAGACT-GCA-TCCCCCTCGACGAGAACAACGTCGAGAGCAAGGAGCAG- 175 Query 121 TTGATGGAGAAGTACCGCAAG--ATTACCGGTAAGGCCT 157 ||||||| |||||| ||| | ||||| ||||||| Sbjct 176 TTGATGGCCAAGTAC--AAAGCCCTCACCGGCAAGGCCT 212 >seq419403 Length=2586 Score = 80.6 bits (88), Expect = 2e-13 Identities = 61/71 (86%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60 |||| || |||||||||||| | ||||| || ||||||||||| |||||| ||||||||| Sbjct 2527 TCGATCCCAACCTGTGCACCGAATGCGTGGGCCACTACGACGAGCCGCAGTGCCAGCAGG 2468 Query 61 TATCGCCCGGT 71 | | ||||||| Sbjct 2467 TCT-GCCCGGT 2458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432983956568