Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001262.1
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
seq408113 235 7e-60
seq188193 192 8e-47
seq157207 192 8e-47
>seq408113
Length=1454
Score = 235 bits (260), Expect = 7e-60
Identities = 184/213 (86%), Gaps = 5/213 (2%)
Strand=Plus/Plus
Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83
|||||||| ||||| ||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct 1121 TCGAGATC-AGGAAGGCGGCGGTCTTGCCGGTACCGGTCTGGGCGCGACCGA-TGGCGTC 1178
Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143
|| ||| |||||||| |||||||||| |||||| |||||||||||||||| || ||
Sbjct 1179 CTT-GCCCTTGAGGGTGAAGCCCAGCACCT-GCGCCT-GGATCGGCGTGCAGTAGGGAAA 1235
Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203
|| ||||| |||||| |||||||||| ||| |||| ||||| ||||||||||||||
Sbjct 1236 GCCGAGGTCATGGATGCCGTGCATCAGCCGCGGATCCAGCTTGAAGTCGTGGAAGCGGGT 1295
Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTC 236
|||||||||||| |||||||| |||||||||||
Sbjct 1296 CTTGCCTTCCTGCGGCTCGACCACGAAGTCTTC 1328
>seq188193
Length=459
Score = 192 bits (212), Expect = 8e-47
Identities = 158/186 (85%), Gaps = 5/186 (3%)
Strand=Plus/Minus
Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 337 TCGAGATC-AGGAAGGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGA-TGGCGTC 280
Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143
| ||| || ||| | ||||| || | |||| ||||||||||||||||||| ||
Sbjct 279 CTG-GCCCTTGAGCGTGTAGCCCAGTACGCCG-GCCT-GGATCGGCGTGCAGTACGGAAA 223
Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203
|||||||| ||||||||||||||||| ||||| | ||| ||||| ||||||||||| ||
Sbjct 222 GCCCAGGTCGTGGATGGCGTGCATCAGCTCCGGCGACAGCTTGAAGTCGTGGAAGCGTGT 163
Query 204 CTTGCC 209
||||||
Sbjct 162 CTTGCC 157
>seq157207
Length=324
Score = 192 bits (212), Expect = 8e-47
Identities = 175/214 (82%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83
|||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 107 TCGAGATC-AGGAAGGCGGCGGTCTTGCCTGTGCCGGTCTGGGCGCGGCC-AATGGCGTC 164
Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143
| ||| || || | ||||| || | |||| ||||||||||||||||||||||
Sbjct 165 CTG-GCCTTTGAGCGTATAGCCCAGTACGCCG-GCCT-GGATCGGCGTGCAGTACGGGAA 221
Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203
|||||||| ||||||||||||||||| ||||| | ||| ||||| || |||||||||||
Sbjct 222 GCCCAGGTCGTGGATGGCGTGCATCAGCTCCGGCGACAGCTTGAAGTCATGGAAGCGGGT 281
Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 237
|||||| | |||||||| |||||| |||
Sbjct 282 CTTGCCGGGCGCCGGCTCGACCTGGAAGTCCTCG 315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 655843345978
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |