Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001262.1 Length=237 Score E Sequences producing significant alignments: (Bits) Value seq408113 235 7e-60 seq188193 192 8e-47 seq157207 192 8e-47 >seq408113 Length=1454 Score = 235 bits (260), Expect = 7e-60 Identities = 184/213 (86%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83 |||||||| ||||| ||||||||||||||||| |||||||||||||| |||| ||||||| Sbjct 1121 TCGAGATC-AGGAAGGCGGCGGTCTTGCCGGTACCGGTCTGGGCGCGACCGA-TGGCGTC 1178 Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143 || ||| |||||||| |||||||||| |||||| |||||||||||||||| || || Sbjct 1179 CTT-GCCCTTGAGGGTGAAGCCCAGCACCT-GCGCCT-GGATCGGCGTGCAGTAGGGAAA 1235 Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203 || ||||| |||||| |||||||||| ||| |||| ||||| |||||||||||||| Sbjct 1236 GCCGAGGTCATGGATGCCGTGCATCAGCCGCGGATCCAGCTTGAAGTCGTGGAAGCGGGT 1295 Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTC 236 |||||||||||| |||||||| ||||||||||| Sbjct 1296 CTTGCCTTCCTGCGGCTCGACCACGAAGTCTTC 1328 >seq188193 Length=459 Score = 192 bits (212), Expect = 8e-47 Identities = 158/186 (85%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83 |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 337 TCGAGATC-AGGAAGGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGA-TGGCGTC 280 Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143 | ||| || ||| | ||||| || | |||| ||||||||||||||||||| || Sbjct 279 CTG-GCCCTTGAGCGTGTAGCCCAGTACGCCG-GCCT-GGATCGGCGTGCAGTACGGAAA 223 Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203 |||||||| ||||||||||||||||| ||||| | ||| ||||| ||||||||||| || Sbjct 222 GCCCAGGTCGTGGATGGCGTGCATCAGCTCCGGCGACAGCTTGAAGTCGTGGAAGCGTGT 163 Query 204 CTTGCC 209 |||||| Sbjct 162 CTTGCC 157 >seq157207 Length=324 Score = 192 bits (212), Expect = 8e-47 Identities = 175/214 (82%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 107 TCGAGATC-AGGAAGGCGGCGGTCTTGCCTGTGCCGGTCTGGGCGCGGCC-AATGGCGTC 164 Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143 | ||| || || | ||||| || | |||| |||||||||||||||||||||| Sbjct 165 CTG-GCCTTTGAGCGTATAGCCCAGTACGCCG-GCCT-GGATCGGCGTGCAGTACGGGAA 221 Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203 |||||||| ||||||||||||||||| ||||| | ||| ||||| || ||||||||||| Sbjct 222 GCCCAGGTCGTGGATGGCGTGCATCAGCTCCGGCGACAGCTTGAAGTCATGGAAGCGGGT 281 Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 237 |||||| | |||||||| |||||| ||| Sbjct 282 CTTGCCGGGCGCCGGCTCGACCTGGAAGTCCTCG 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655843345978