Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001286.1 Length=411 Score E Sequences producing significant alignments: (Bits) Value seq377896 390 3e-106 seq459762 313 6e-83 seq207320 280 4e-73 seq325642 257 4e-66 seq117254 143 6e-32 seq37078 111 4e-22 seq484581 102 2e-19 >seq377896 Length=3457 Score = 390 bits (432), Expect = 3e-106 Identities = 290/339 (86%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 73 ACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCCAAAG 132 |||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||| Sbjct 1500 ACGCTGTCCTTGACCACCAGAATGTCCTCCATGATCAGGTATTGCAGGTCCGAGCCGAAG 1441 Query 133 AACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAG 192 ||||||| ||| ||||| |||||||||||||||||| ||| |||||||||||||||||| Sbjct 1440 AACATGTTCAGGGCGTCGGTCGGCGAGCAGATCATCGGTTCACCACGGCGGTTGAGCGAG 1381 Query 193 GTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAG 252 ||||||||||| |||||||||||||| ||| ||||||||| ||||| |||||| || Sbjct 1380 GTGTTCAGGGAGACGCCGTTGCCGGTGAGCTTTTCCAGCTCCAGCATCAGGTCGTACCAG 1321 Query 253 CGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGACCACT 312 |||||||||||||||||||||||||||||||||||||||||||| || || ||||| || Sbjct 1320 CGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCGTCCTCGTGGACGACC 1261 Query 313 TCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCC 372 || || || |||||| || || || || |||||||||||||||||||| | Sbjct 1260 TCGCTGACCCGCTCCTTCCATTCGTCGTTGACCTCGAAGGTGAAGGTCATGAACGGGCTC 1201 Query 373 GGGTGATCGACCTTGATCATCTGCGGGGCCACGGTGTCG 411 |||||||||||||||| ||||||| ||| ||||||||| Sbjct 1200 GGGTGATCGACCTTGAGCATCTGCTCGGCAACGGTGTCG 1162 >seq459762 Length=796 Score = 313 bits (346), Expect = 6e-83 Identities = 325/427 (76%), Gaps = 18/427 (4%) Strand=Plus/Minus Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCC------GAG 56 ||||| || || || ||||| |||||||||||||||| ||| | ||| ||| Sbjct 526 AGGAAGGGGCCATCGTAGCCATGGCAGAACTGCAGGATCCAGCGTTGTGCCTGGCCAGAG 467 Query 57 C-GTG-----------TCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCAT 104 | ||| ||||| ||| ||||||||||||||| ||||| |||||||| Sbjct 466 CCGTGCTCAGACGCCGTCATACCAATCCTTGCCGTCCTTGACCACGAGGATATCTTCCAT 407 Query 105 GATCAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGAT 164 ||| ||||| ||||| || |||||| | ||||||| ||| || || | |||||||| || Sbjct 406 GATGAGGTACTGCAGATCCGAGCCATAAAACATGTTCAGGGCATCGGTGGGCGAGCAAAT 347 Query 165 CATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCAC 224 ||| | |||||||| ||||||||||| ||||||||||| ||||| |||||||| || | Sbjct 346 CATTGGCTCGCCACGACGGTTGAGCGACGTGTTCAGGGATACGCCATTGCCGGTAAGTCC 287 Query 225 TTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGC 284 |||| ||| ||||| ||||| ||||||||||||| |||||||||||||||||||| Sbjct 286 CTCCAACTCCAGCATCAGATCGTACCAGCGCGGGTTGTACTCGCGCTTGAGCACCTGGGC 227 Query 285 GCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGACAC 344 |||||| || || ||||| ||||| || || ||||| ||||||||| || || Sbjct 226 GCGGGAAGTACCGTCTTCGTGGACGACCTCGCTAACGCGCTCCTTCCACTCGTCATTGAC 167 Query 345 TTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGCGGGGCCAC 404 || |||||||| ||||||||||| |||||| |||||||||| ||||| ||| || Sbjct 166 CTCGAAGGTGAAAGTCATGAACGGGCTCGGGTGGTCGACCTTGAGCATCTTGTCGGCAAC 107 Query 405 GGTGTCG 411 ||||||| Sbjct 106 GGTGTCG 100 >seq207320 Length=268 Score = 280 bits (310), Expect = 4e-73 Identities = 223/268 (83%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 87 CACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGC 146 |||||| |||||||||||||||||||| |||||||| ||||| |||||||||| || ||| Sbjct 268 CACCAGAATGTCTTCCATGATCAGGTACTGCAGGTCCGAGCCGAAGAACATGTTCAACGC 209 Query 147 GTCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACAC 206 ||| |||||||||||||||||| || || |||||||| |||||||||||||||||||| Sbjct 208 GTCGGTCGGCGAGCAGATCATCGGCTCACCTCGGCGGTTCAGCGAGGTGTTCAGGGACAC 149 Query 207 GCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTC 266 |||||||| || ||| |||||||| ||||| |||||| ||||||||||||| || Sbjct 148 ACCGTTGCCAGTGAGCTTCTCCAGCTCCAGCATCAGGTCGTACCAGCGCGGGTTGTACTC 89 Query 267 GCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGT 326 |||||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| Sbjct 88 GCGCTTGAGCACTTGGGCGCGGGACGTGCCGTCTTCGTGGACGACTTCGCTGACGCGCTC 29 Query 327 CTTCCACTCTTCCGACACTTCAAAGGTG 354 |||||||| || ||||| |||||| Sbjct 28 TTTCCACTCGTCGTTGACTTCGAAGGTG 1 >seq325642 Length=1143 Score = 257 bits (284), Expect = 4e-66 Identities = 210/255 (82%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 157 GAGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCG 216 ||||||| ||| | ||| || |||||||||||||||||||| |||||||||||||||||| Sbjct 402 GAGCAGACCATGGGTTCACCGCGGCGGTTGAGCGAGGTGTTGAGGGACACGCCGTTGCCG 461 Query 217 GTCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGC 276 || ||| |||||||| ||| | |||||| ||||||| |||| ||||| ||| Sbjct 462 GTGAGCTTCTCCAGCTCGACCATGAGGTCGTACCAGCGCGGATTGTGCCGGCGCTCCAGC 521 Query 277 ACCTGGGCGCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGTCTTCCACTCT 336 |||||||||||||||||||| ||||| |||||||| || || || ||| ||||||||||| Sbjct 522 ACCTGGGCGCGGGAGGTGCCGTCTTCGTGGACCACCTCGGGTACCCGGCTCTTCCACTCT 581 Query 337 TCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGC 396 || || || ||||| ||||||||||| |||| || || |||||||||| ||||||| Sbjct 582 TCGTTGACCTCGAAGGTAAAGGTCATGAAGGGCGAGGGATGGTCGACCTTGAGCATCTGC 641 Query 397 GGGGCCACGGTGTCG 411 || |||||||||||| Sbjct 642 GGCGCCACGGTGTCG 656 Score = 201 bits (222), Expect = 3e-49 Identities = 168/204 (82%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 1 CGAGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGAGCGTG 60 ||||||| || ||||| |||||||| ||||||||||| || | | || || || || | Sbjct 186 CGAGGAAGGGACCGTCGTAGCCGTGACAGAACTGCAGCACCCGCGGTTCGGCGGAACGCG 245 Query 61 TCATAAGGGTCCA-CGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAG 119 ||||| | ||| | || ||||||||||||||||||||||||||||||||||| ||||| Sbjct 246 TCATACG---CCAGCCCCCTCCTTGACCACCAGGATGTCTTCCATGATCAGGTACTGCAG 302 Query 120 GTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACG 179 || ||||| |||||||||| ||| ||||| | |||||||||| ||| | ||| || || Sbjct 303 ATCCGAGCCGAAGAACATGTTCAGGGCGTCGGTGGGCGAGCAGACCATGGGTTCACCGCG 362 Query 180 GCGGTTGAGCGAGGTGTTCAGGGA 203 |||||||||||||||||| ||||| Sbjct 363 GCGGTTGAGCGAGGTGTTGAGGGA 386 >seq117254 Length=589 Score = 143 bits (158), Expect = 6e-32 Identities = 117/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 59 TGTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCA 118 ||||||| ||| ||||||||||||||| || | ||||||||||| ||||| |||| Sbjct 448 TGTCATACCATTCCTTGCCGTCCTTGACCACGAGCACATCTTCCATGATGAGGTACTGCA 507 Query 119 GGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCAC 178 | || ||||| ||||||||| || |||||| |||| ||||||||||||| ||||| | Sbjct 508 GATCCGAGCCGTAGAACATGTTCAACGCGTCGGTCGGTGAGCAGATCATCGGCTCGCCGC 567 Query 179 GGCGGTTGAGCGAGGTGTTCAG 200 |||||||||||||||| ||||| Sbjct 568 GGCGGTTGAGCGAGGTATTCAG 589 Score = 141 bits (156), Expect = 2e-31 Identities = 157/209 (75%), Gaps = 18/209 (9%) Strand=Plus/Plus Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACG------------TGGCGATCA 50 || || || |||||||||| |||||||||||||| || |||| ||| Sbjct 192 AGAAAAGGGCCGTCATAGCTATGGCAGAACTGCAGAACCCAGCGCTGCGTTTGGCCATCT 251 Query 51 GCCG----AG-CG-TGTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCAT 104 ||| || || ||||||| ||| ||||||||||||||| || | |||||||| Sbjct 252 GCCTGCTCAGACGCTGTCATACCATTCCTTGCCGTCCTTGACCACGAGCACATCTTCCAT 311 Query 105 GATCAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGAT 164 ||| ||||| ||||| || ||||| ||||||||| || |||||| |||| |||||||| Sbjct 312 GATGAGGTACTGCAGATCCGAGCCGTAGAACATGTTCAACGCGTCGGTCGGTGAGCAGAT 371 Query 165 CATCGCTTCGCCACGGCGGTTGAGCGAGG 193 ||||| ||||| |||||||||||||||| Sbjct 372 CATCGGCTCGCCGCGGCGGTTGAGCGAGG 400 >seq37078 Length=551 Score = 111 bits (122), Expect = 4e-22 Identities = 116/153 (76%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCG------AG 56 || ||||| |||||||||| || ||||||||||| || || || | || | Sbjct 153 AGAAACGGACCGTCATAGCTATGACAGAACTGCAGCACCCAACGCTCTGACGGCTCACAC 94 Query 57 CGTGTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTG 116 | | ||| | ||| | ||||||||| |||||| |||||||||||||||||||| || Sbjct 93 AGGGGCATGTGCTTCCTTGTCGTCCTTGATCACCAGAATGTCTTCCATGATCAGGTACTG 34 Query 117 CAGGTCGGAGCCAAAGAACATGTCCAGCGCGTC 149 |||||| ||||| |||||||||| || |||||| Sbjct 33 CAGGTCCGAGCCGAAGAACATGTTCAACGCGTC 1 >seq484581 Length=621 Score = 102 bits (112), Expect = 2e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 79 TCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCCAAAGAACATG 138 |||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 551 TCCTTGACCACCAGAATGTCTTCCATGATCAGGTACTGCAGGTCCGAGCCGAAGAACATG 610 Query 139 TCCAGCGCGTC 149 | || |||||| Sbjct 611 TTCAACGCGTC 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1206425195744