Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001286.1
Length=411
Score E
Sequences producing significant alignments: (Bits) Value
seq377896 390 3e-106
seq459762 313 6e-83
seq207320 280 4e-73
seq325642 257 4e-66
seq117254 143 6e-32
seq37078 111 4e-22
seq484581 102 2e-19
>seq377896
Length=3457
Score = 390 bits (432), Expect = 3e-106
Identities = 290/339 (86%), Gaps = 0/339 (0%)
Strand=Plus/Minus
Query 73 ACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCCAAAG 132
|||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1500 ACGCTGTCCTTGACCACCAGAATGTCCTCCATGATCAGGTATTGCAGGTCCGAGCCGAAG 1441
Query 133 AACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAG 192
||||||| ||| ||||| |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1440 AACATGTTCAGGGCGTCGGTCGGCGAGCAGATCATCGGTTCACCACGGCGGTTGAGCGAG 1381
Query 193 GTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAG 252
||||||||||| |||||||||||||| ||| ||||||||| ||||| |||||| ||
Sbjct 1380 GTGTTCAGGGAGACGCCGTTGCCGGTGAGCTTTTCCAGCTCCAGCATCAGGTCGTACCAG 1321
Query 253 CGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGACCACT 312
|||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||
Sbjct 1320 CGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCGTCCTCGTGGACGACC 1261
Query 313 TCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCC 372
|| || || |||||| || || || || |||||||||||||||||||| |
Sbjct 1260 TCGCTGACCCGCTCCTTCCATTCGTCGTTGACCTCGAAGGTGAAGGTCATGAACGGGCTC 1201
Query 373 GGGTGATCGACCTTGATCATCTGCGGGGCCACGGTGTCG 411
|||||||||||||||| ||||||| ||| |||||||||
Sbjct 1200 GGGTGATCGACCTTGAGCATCTGCTCGGCAACGGTGTCG 1162
>seq459762
Length=796
Score = 313 bits (346), Expect = 6e-83
Identities = 325/427 (76%), Gaps = 18/427 (4%)
Strand=Plus/Minus
Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCC------GAG 56
||||| || || || ||||| |||||||||||||||| ||| | ||| |||
Sbjct 526 AGGAAGGGGCCATCGTAGCCATGGCAGAACTGCAGGATCCAGCGTTGTGCCTGGCCAGAG 467
Query 57 C-GTG-----------TCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCAT 104
| ||| ||||| ||| ||||||||||||||| ||||| ||||||||
Sbjct 466 CCGTGCTCAGACGCCGTCATACCAATCCTTGCCGTCCTTGACCACGAGGATATCTTCCAT 407
Query 105 GATCAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGAT 164
||| ||||| ||||| || |||||| | ||||||| ||| || || | |||||||| ||
Sbjct 406 GATGAGGTACTGCAGATCCGAGCCATAAAACATGTTCAGGGCATCGGTGGGCGAGCAAAT 347
Query 165 CATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCAC 224
||| | |||||||| ||||||||||| ||||||||||| ||||| |||||||| || |
Sbjct 346 CATTGGCTCGCCACGACGGTTGAGCGACGTGTTCAGGGATACGCCATTGCCGGTAAGTCC 287
Query 225 TTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGC 284
|||| ||| ||||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 286 CTCCAACTCCAGCATCAGATCGTACCAGCGCGGGTTGTACTCGCGCTTGAGCACCTGGGC 227
Query 285 GCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGACAC 344
|||||| || || ||||| ||||| || || ||||| ||||||||| || ||
Sbjct 226 GCGGGAAGTACCGTCTTCGTGGACGACCTCGCTAACGCGCTCCTTCCACTCGTCATTGAC 167
Query 345 TTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGCGGGGCCAC 404
|| |||||||| ||||||||||| |||||| |||||||||| ||||| ||| ||
Sbjct 166 CTCGAAGGTGAAAGTCATGAACGGGCTCGGGTGGTCGACCTTGAGCATCTTGTCGGCAAC 107
Query 405 GGTGTCG 411
|||||||
Sbjct 106 GGTGTCG 100
>seq207320
Length=268
Score = 280 bits (310), Expect = 4e-73
Identities = 223/268 (83%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 87 CACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGC 146
|||||| |||||||||||||||||||| |||||||| ||||| |||||||||| || |||
Sbjct 268 CACCAGAATGTCTTCCATGATCAGGTACTGCAGGTCCGAGCCGAAGAACATGTTCAACGC 209
Query 147 GTCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACAC 206
||| |||||||||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct 208 GTCGGTCGGCGAGCAGATCATCGGCTCACCTCGGCGGTTCAGCGAGGTGTTCAGGGACAC 149
Query 207 GCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTC 266
|||||||| || ||| |||||||| ||||| |||||| ||||||||||||| ||
Sbjct 148 ACCGTTGCCAGTGAGCTTCTCCAGCTCCAGCATCAGGTCGTACCAGCGCGGGTTGTACTC 89
Query 267 GCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGT 326
|||||||||||| ||||||||||| ||||| ||||| ||||| ||||| |||||
Sbjct 88 GCGCTTGAGCACTTGGGCGCGGGACGTGCCGTCTTCGTGGACGACTTCGCTGACGCGCTC 29
Query 327 CTTCCACTCTTCCGACACTTCAAAGGTG 354
|||||||| || ||||| ||||||
Sbjct 28 TTTCCACTCGTCGTTGACTTCGAAGGTG 1
>seq325642
Length=1143
Score = 257 bits (284), Expect = 4e-66
Identities = 210/255 (82%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 157 GAGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCG 216
||||||| ||| | ||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 402 GAGCAGACCATGGGTTCACCGCGGCGGTTGAGCGAGGTGTTGAGGGACACGCCGTTGCCG 461
Query 217 GTCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGC 276
|| ||| |||||||| ||| | |||||| ||||||| |||| ||||| |||
Sbjct 462 GTGAGCTTCTCCAGCTCGACCATGAGGTCGTACCAGCGCGGATTGTGCCGGCGCTCCAGC 521
Query 277 ACCTGGGCGCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGTCTTCCACTCT 336
|||||||||||||||||||| ||||| |||||||| || || || ||| |||||||||||
Sbjct 522 ACCTGGGCGCGGGAGGTGCCGTCTTCGTGGACCACCTCGGGTACCCGGCTCTTCCACTCT 581
Query 337 TCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGC 396
|| || || ||||| ||||||||||| |||| || || |||||||||| |||||||
Sbjct 582 TCGTTGACCTCGAAGGTAAAGGTCATGAAGGGCGAGGGATGGTCGACCTTGAGCATCTGC 641
Query 397 GGGGCCACGGTGTCG 411
|| ||||||||||||
Sbjct 642 GGCGCCACGGTGTCG 656
Score = 201 bits (222), Expect = 3e-49
Identities = 168/204 (82%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 1 CGAGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGAGCGTG 60
||||||| || ||||| |||||||| ||||||||||| || | | || || || || |
Sbjct 186 CGAGGAAGGGACCGTCGTAGCCGTGACAGAACTGCAGCACCCGCGGTTCGGCGGAACGCG 245
Query 61 TCATAAGGGTCCA-CGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAG 119
||||| | ||| | || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 246 TCATACG---CCAGCCCCCTCCTTGACCACCAGGATGTCTTCCATGATCAGGTACTGCAG 302
Query 120 GTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACG 179
|| ||||| |||||||||| ||| ||||| | |||||||||| ||| | ||| || ||
Sbjct 303 ATCCGAGCCGAAGAACATGTTCAGGGCGTCGGTGGGCGAGCAGACCATGGGTTCACCGCG 362
Query 180 GCGGTTGAGCGAGGTGTTCAGGGA 203
|||||||||||||||||| |||||
Sbjct 363 GCGGTTGAGCGAGGTGTTGAGGGA 386
>seq117254
Length=589
Score = 143 bits (158), Expect = 6e-32
Identities = 117/142 (82%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 59 TGTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCA 118
||||||| ||| ||||||||||||||| || | ||||||||||| ||||| ||||
Sbjct 448 TGTCATACCATTCCTTGCCGTCCTTGACCACGAGCACATCTTCCATGATGAGGTACTGCA 507
Query 119 GGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCAC 178
| || ||||| ||||||||| || |||||| |||| ||||||||||||| ||||| |
Sbjct 508 GATCCGAGCCGTAGAACATGTTCAACGCGTCGGTCGGTGAGCAGATCATCGGCTCGCCGC 567
Query 179 GGCGGTTGAGCGAGGTGTTCAG 200
|||||||||||||||| |||||
Sbjct 568 GGCGGTTGAGCGAGGTATTCAG 589
Score = 141 bits (156), Expect = 2e-31
Identities = 157/209 (75%), Gaps = 18/209 (9%)
Strand=Plus/Plus
Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACG------------TGGCGATCA 50
|| || || |||||||||| |||||||||||||| || |||| |||
Sbjct 192 AGAAAAGGGCCGTCATAGCTATGGCAGAACTGCAGAACCCAGCGCTGCGTTTGGCCATCT 251
Query 51 GCCG----AG-CG-TGTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCAT 104
||| || || ||||||| ||| ||||||||||||||| || | ||||||||
Sbjct 252 GCCTGCTCAGACGCTGTCATACCATTCCTTGCCGTCCTTGACCACGAGCACATCTTCCAT 311
Query 105 GATCAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGAT 164
||| ||||| ||||| || ||||| ||||||||| || |||||| |||| ||||||||
Sbjct 312 GATGAGGTACTGCAGATCCGAGCCGTAGAACATGTTCAACGCGTCGGTCGGTGAGCAGAT 371
Query 165 CATCGCTTCGCCACGGCGGTTGAGCGAGG 193
||||| ||||| ||||||||||||||||
Sbjct 372 CATCGGCTCGCCGCGGCGGTTGAGCGAGG 400
>seq37078
Length=551
Score = 111 bits (122), Expect = 4e-22
Identities = 116/153 (76%), Gaps = 6/153 (4%)
Strand=Plus/Minus
Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCG------AG 56
|| ||||| |||||||||| || ||||||||||| || || || | || |
Sbjct 153 AGAAACGGACCGTCATAGCTATGACAGAACTGCAGCACCCAACGCTCTGACGGCTCACAC 94
Query 57 CGTGTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTG 116
| | ||| | ||| | ||||||||| |||||| |||||||||||||||||||| ||
Sbjct 93 AGGGGCATGTGCTTCCTTGTCGTCCTTGATCACCAGAATGTCTTCCATGATCAGGTACTG 34
Query 117 CAGGTCGGAGCCAAAGAACATGTCCAGCGCGTC 149
|||||| ||||| |||||||||| || ||||||
Sbjct 33 CAGGTCCGAGCCGAAGAACATGTTCAACGCGTC 1
>seq484581
Length=621
Score = 102 bits (112), Expect = 2e-19
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 79 TCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCCAAAGAACATG 138
|||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 551 TCCTTGACCACCAGAATGTCTTCCATGATCAGGTACTGCAGGTCCGAGCCGAAGAACATG 610
Query 139 TCCAGCGCGTC 149
| || ||||||
Sbjct 611 TTCAACGCGTC 621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1206425195744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |