Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001377.1
Length=151
Score E
Sequences producing significant alignments: (Bits) Value
seq32793 176 3e-42
seq425839 136 3e-30
seq207076 107 1e-21
seq278889 78.8 7e-13
seq464089 73.4 3e-11
>seq32793
Length=2133
Score = 176 bits (194), Expect = 3e-42
Identities = 123/140 (88%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 12 GAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTG 71
|| || ||||||||||| ||||||||||||||||||| | |||||| |||| |||||
Sbjct 762 GAGGACGCCATCGCCCAGGTGCGCGCCCAGGTCGGCAGCGCCAACGTGCTGCTGGGCCTC 703
Query 72 TCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAA 131
||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 702 TCCGGCGGCGTCGACTCCTCGGTGGTCGCGGCCCTGCTGCACAAGGCCATCGGCGACCAG 643
Query 132 CTGACCTGCGTGTTTGTCGA 151
||||||||||| || |||||
Sbjct 642 CTGACCTGCGTCTTCGTCGA 623
>seq425839
Length=316
Score = 136 bits (150), Expect = 3e-30
Identities = 114/140 (81%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 12 GAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTG 71
||||| ||||||||||| ||||| | ||||||||| | |||||| |||| ||||||
Sbjct 125 GAAGACGCCATCGCCCAGGTGCGTGAGCAGGTCGGCGACGCCAACGTGCTGCTGGGCCTG 184
Query 72 TCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAA 131
|||||||| || ||| |||||| || || || ||||||||| ||||||||||||||
Sbjct 185 TCCGGCGGTGTCGACAGCTCGGTGGTCGCCGCGCTGCTGCACCGCGCCATCGGCGACCAG 244
Query 132 CTGACCTGCGTGTTTGTCGA 151
||||||||||| || |||||
Sbjct 245 CTGACCTGCGTATTCGTCGA 264
>seq207076
Length=504
Score = 107 bits (118), Expect = 1e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 12 GAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTG 71
|||||| ||||||| ||||||| ||||||||| ||| | || | || ||||||
Sbjct 374 GAAGATCAGATCGCCCGCGTGCGCGAGCAGGTCGGCGAGGACGAAGTGATCCTGGGCCTG 315
Query 72 TCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGAC 128
||||| ||||| || |||||||| || || || ||||||||||||||||||||||||
Sbjct 314 TCCGGTGGCGTGGATTCCTCGGTGGTGGCCGCGCTGCTGCACAAGGCCATCGGCGAC 258
Score = 87.8 bits (96), Expect = 1e-15
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 81 GTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGC 140
|| || |||||||| || || || |||||||||||||||||||||||| | |||||||||
Sbjct 237 GTGGATTCCTCGGTGGTGGCCGCCCTGCTGCACAAGGCCATCGGCGACAAGCTGACCTGC 178
Query 141 GTGTTTGTCGA 151
||||| |||||
Sbjct 177 GTGTTCGTCGA 167
>seq278889
Length=10716
Score = 78.8 bits (86), Expect = 7e-13
Identities = 90/121 (74%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 31 TGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTGTCCGGCGGCGTTGACTCCT 90
|||| | ||||| || | |||||| || | || || ||||| ||||| || || || |
Sbjct 8370 TGCGTGAGCAGGTAGGAAATGACAAAGTTATCCTCGGTCTGTCTGGCGGTGTGGATTCAT 8429
Query 91 CGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCG 150
|||| ||| ||||||||| ||||| ||||||| ||||||||||||||||| |
Sbjct 8430 CGGTAACGGCGATGCTGCTGCACCGTGCCATTGGCGACCGTCTGACCTGCGTGTTTGTGG 8489
Query 151 A 151
|
Sbjct 8490 A 8490
>seq464089
Length=1699
Score = 73.4 bits (80), Expect = 3e-11
Identities = 91/121 (75%), Gaps = 4/121 (3%)
Strand=Plus/Minus
Query 33 CGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCGGCGTTGACTCCT 90
||||| ||||||||| | | ||| || ||| || |||||||||||||| |||||||
Sbjct 1586 CGCGCGCAGGTCGGCGACGCCCGCGTCATCTGC--GGGCTGTCCGGCGGCGTCGACTCCT 1529
Query 91 CGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCG 150
| || | ||||| ||| |||| || |||||||||| || || ||||| || ||||
Sbjct 1528 CCGTCGCCGCGGCCCTGGTGCAGCGCGCGGTCGGCGACCAGCTCACGTGCGTCTTCGTCG 1469
Query 151 A 151
|
Sbjct 1468 A 1468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385291973990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |