Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001377.1 Length=151 Score E Sequences producing significant alignments: (Bits) Value seq32793 176 3e-42 seq425839 136 3e-30 seq207076 107 1e-21 seq278889 78.8 7e-13 seq464089 73.4 3e-11 >seq32793 Length=2133 Score = 176 bits (194), Expect = 3e-42 Identities = 123/140 (88%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 12 GAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTG 71 || || ||||||||||| ||||||||||||||||||| | |||||| |||| ||||| Sbjct 762 GAGGACGCCATCGCCCAGGTGCGCGCCCAGGTCGGCAGCGCCAACGTGCTGCTGGGCCTC 703 Query 72 TCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAA 131 ||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 702 TCCGGCGGCGTCGACTCCTCGGTGGTCGCGGCCCTGCTGCACAAGGCCATCGGCGACCAG 643 Query 132 CTGACCTGCGTGTTTGTCGA 151 ||||||||||| || ||||| Sbjct 642 CTGACCTGCGTCTTCGTCGA 623 >seq425839 Length=316 Score = 136 bits (150), Expect = 3e-30 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 12 GAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTG 71 ||||| ||||||||||| ||||| | ||||||||| | |||||| |||| |||||| Sbjct 125 GAAGACGCCATCGCCCAGGTGCGTGAGCAGGTCGGCGACGCCAACGTGCTGCTGGGCCTG 184 Query 72 TCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAA 131 |||||||| || ||| |||||| || || || ||||||||| |||||||||||||| Sbjct 185 TCCGGCGGTGTCGACAGCTCGGTGGTCGCCGCGCTGCTGCACCGCGCCATCGGCGACCAG 244 Query 132 CTGACCTGCGTGTTTGTCGA 151 ||||||||||| || ||||| Sbjct 245 CTGACCTGCGTATTCGTCGA 264 >seq207076 Length=504 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 12 GAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTG 71 |||||| ||||||| ||||||| ||||||||| ||| | || | || |||||| Sbjct 374 GAAGATCAGATCGCCCGCGTGCGCGAGCAGGTCGGCGAGGACGAAGTGATCCTGGGCCTG 315 Query 72 TCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGAC 128 ||||| ||||| || |||||||| || || || |||||||||||||||||||||||| Sbjct 314 TCCGGTGGCGTGGATTCCTCGGTGGTGGCCGCGCTGCTGCACAAGGCCATCGGCGAC 258 Score = 87.8 bits (96), Expect = 1e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 81 GTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGC 140 || || |||||||| || || || |||||||||||||||||||||||| | ||||||||| Sbjct 237 GTGGATTCCTCGGTGGTGGCCGCCCTGCTGCACAAGGCCATCGGCGACAAGCTGACCTGC 178 Query 141 GTGTTTGTCGA 151 ||||| ||||| Sbjct 177 GTGTTCGTCGA 167 >seq278889 Length=10716 Score = 78.8 bits (86), Expect = 7e-13 Identities = 90/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 31 TGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTGTCCGGCGGCGTTGACTCCT 90 |||| | ||||| || | |||||| || | || || ||||| ||||| || || || | Sbjct 8370 TGCGTGAGCAGGTAGGAAATGACAAAGTTATCCTCGGTCTGTCTGGCGGTGTGGATTCAT 8429 Query 91 CGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCG 150 |||| ||| ||||||||| ||||| ||||||| ||||||||||||||||| | Sbjct 8430 CGGTAACGGCGATGCTGCTGCACCGTGCCATTGGCGACCGTCTGACCTGCGTGTTTGTGG 8489 Query 151 A 151 | Sbjct 8490 A 8490 >seq464089 Length=1699 Score = 73.4 bits (80), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 33 CGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCGGCGTTGACTCCT 90 ||||| ||||||||| | | ||| || ||| || |||||||||||||| ||||||| Sbjct 1586 CGCGCGCAGGTCGGCGACGCCCGCGTCATCTGC--GGGCTGTCCGGCGGCGTCGACTCCT 1529 Query 91 CGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCG 150 | || | ||||| ||| |||| || |||||||||| || || ||||| || |||| Sbjct 1528 CCGTCGCCGCGGCCCTGGTGCAGCGCGCGGTCGGCGACCAGCTCACGTGCGTCTTCGTCG 1469 Query 151 A 151 | Sbjct 1468 A 1468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385291973990