Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq75645 96.9 2e-18
seq423500 91.5 9e-17
seq315545 91.5 9e-17
seq357054 87.8 1e-15
seq309229 87.8 1e-15
seq227794 87.8 1e-15
seq326706 80.6 2e-13
seq395574 75.2 7e-12
seq434476 71.6 8e-11
seq420198 71.6 8e-11
seq186638 71.6 8e-11
seq162806 71.6 8e-11
seq123374 71.6 8e-11
seq47819 71.6 8e-11
>seq75645
Length=763
Score = 96.9 bits (106), Expect = 2e-18
Identities = 76/86 (88%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||||| | |||||| |||| || || ||||||||| ||||||||||| ||||||||||
Sbjct 391 TCCGAAGGC-CTCACTGAGCCGTT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 447
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||| |||||||||||
Sbjct 448 GGCAGGGACGTAAT-CAACGCAAGCT 472
Score = 86.0 bits (94), Expect = 4e-15
Identities = 71/82 (87%), Gaps = 4/82 (5%)
Strand=Plus/Plus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||||| | |||||| |||| || || ||||||||| ||||||||||| ||||||||||
Sbjct 192 TCCGAAGGC-CTCACTGAGCCGTT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 248
Query 99 GGCAGGGACGTAATACAACGCA 120
|||||||||||||| |||| ||
Sbjct 249 GGCAGGGACGTAAT-CAACNCA 269
>seq423500
Length=222
Score = 91.5 bits (100), Expect = 9e-17
Identities = 75/86 (87%), Gaps = 4/86 (5%)
Strand=Plus/Minus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||||| | |||||| ||||||| || ||||||||| ||||||||||| ||||||||||
Sbjct 152 TCCGAACGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 96
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
||||||||||||| |||||| ||||
Sbjct 95 AGCAGGGACGTAAT-CAACGCGAGCT 71
>seq315545
Length=225
Score = 91.5 bits (100), Expect = 9e-17
Identities = 67/74 (91%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 95 CTCACTAATCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 152
Query 109 TAATACAACGCAAG 122
|||| ||| |||||
Sbjct 153 TAAT-CAATGCAAG 165
>seq357054
Length=661
Score = 87.8 bits (96), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||||| | ||||| |||||||| || ||||||||| ||||||||||| ||||||||||
Sbjct 583 TCCGAAGGC-CTCACCAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 639
Query 99 GGCAGGGACGTAAT 112
||||||||||||||
Sbjct 640 GGCAGGGACGTAAT 653
>seq309229
Length=7968
Score = 87.8 bits (96), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 3/72 (4%)
Strand=Plus/Minus
Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112
|||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 3152 CTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT 3095
Query 113 ACAACGCAAGCT 124
|| ||||||||
Sbjct 3094 -CAGCGCAAGCT 3084
>seq227794
Length=868
Score = 87.8 bits (96), Expect = 1e-15
Identities = 74/86 (86%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||||| | |||||||| |||| || ||||||||| ||||||||||| ||||||||||
Sbjct 426 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 482
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
||||||||| |||| |||||| ||||
Sbjct 483 GGCAGGGACTTAAT-CAACGCGAGCT 507
>seq326706
Length=1165
Score = 80.6 bits (88), Expect = 2e-13
Identities = 56/61 (92%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1107 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1164
Query 109 T 109
|
Sbjct 1165 T 1165
Score = 78.8 bits (86), Expect = 6e-13
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| || ||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 951 CTCACTGAGCCATT-CAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1008
Query 109 TA 110
||
Sbjct 1009 TA 1010
>seq395574
Length=8698
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 2876 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 2819
Query 122 GCT 124
|||
Sbjct 2818 GCT 2816
>seq434476
Length=4099
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||| | |||||||||||||||||||||| | |||||| |
Sbjct 487 TTCAATCGGTAGGA-GCGACGGGCAGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 430
Query 122 GCT 124
|||
Sbjct 429 GCT 427
>seq420198
Length=9626
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | | ||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 1615 TTCAATCGGTAGGAGG-GACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1558
Query 122 GCT 124
|||
Sbjct 1557 GCT 1555
>seq186638
Length=10844
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | |||||||| || |||||||||||||||||||||| | |||||| |
Sbjct 5022 TTCAATCGGTAGGA-GCGACGGGTGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 5079
Query 122 GCT 124
|||
Sbjct 5080 GCT 5082
>seq162806
Length=11544
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||| ||| | |||||| |
Sbjct 1612 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGATGTAGT-CAACGCGA 1669
Query 122 GCT 124
|||
Sbjct 1670 GCT 1672
>seq123374
Length=60777
Score = 71.6 bits (78), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109
|||| | |||||| || |||||| | ||||||||||| ||||||||||||||||||| |
Sbjct 54939 TCACCAGACCATTTAAT-CGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACAT 54996
Query 110 AATACAACGCAAGCT 124
| | |||||| ||||
Sbjct 54997 AGT-CAACGCGAGCT 55010
>seq47819
Length=2235
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | ||||| |
Sbjct 1129 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGTGA 1186
Query 122 GCT 124
|||
Sbjct 1187 GCT 1189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 299317731860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |