Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq75645 96.9 2e-18 seq423500 91.5 9e-17 seq315545 91.5 9e-17 seq357054 87.8 1e-15 seq309229 87.8 1e-15 seq227794 87.8 1e-15 seq326706 80.6 2e-13 seq395574 75.2 7e-12 seq434476 71.6 8e-11 seq420198 71.6 8e-11 seq186638 71.6 8e-11 seq162806 71.6 8e-11 seq123374 71.6 8e-11 seq47819 71.6 8e-11 >seq75645 Length=763 Score = 96.9 bits (106), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| |||| || || ||||||||| ||||||||||| |||||||||| Sbjct 391 TCCGAAGGC-CTCACTGAGCCGTT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 447 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||||||||| Sbjct 448 GGCAGGGACGTAAT-CAACGCAAGCT 472 Score = 86.0 bits (94), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 4/82 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| |||| || || ||||||||| ||||||||||| |||||||||| Sbjct 192 TCCGAAGGC-CTCACTGAGCCGTT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 248 Query 99 GGCAGGGACGTAATACAACGCA 120 |||||||||||||| |||| || Sbjct 249 GGCAGGGACGTAAT-CAACNCA 269 >seq423500 Length=222 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 152 TCCGAACGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 96 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||| |||||| |||| Sbjct 95 AGCAGGGACGTAAT-CAACGCGAGCT 71 >seq315545 Length=225 Score = 91.5 bits (100), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 95 CTCACTAATCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 152 Query 109 TAATACAACGCAAG 122 |||| ||| ||||| Sbjct 153 TAAT-CAATGCAAG 165 >seq357054 Length=661 Score = 87.8 bits (96), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | ||||| |||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 583 TCCGAAGGC-CTCACCAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 639 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 640 GGCAGGGACGTAAT 653 >seq309229 Length=7968 Score = 87.8 bits (96), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 3/72 (4%) Strand=Plus/Minus Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 3152 CTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT 3095 Query 113 ACAACGCAAGCT 124 || |||||||| Sbjct 3094 -CAGCGCAAGCT 3084 >seq227794 Length=868 Score = 87.8 bits (96), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 426 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 482 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 ||||||||| |||| |||||| |||| Sbjct 483 GGCAGGGACTTAAT-CAACGCGAGCT 507 >seq326706 Length=1165 Score = 80.6 bits (88), Expect = 2e-13 Identities = 56/61 (92%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1107 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1164 Query 109 T 109 | Sbjct 1165 T 1165 Score = 78.8 bits (86), Expect = 6e-13 Identities = 56/62 (90%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| || ||||||| | ||||||||||| |||||||||||||||||||| Sbjct 951 CTCACTGAGCCATT-CAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1008 Query 109 TA 110 || Sbjct 1009 TA 1010 >seq395574 Length=8698 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 2876 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 2819 Query 122 GCT 124 ||| Sbjct 2818 GCT 2816 >seq434476 Length=4099 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||| | |||||||||||||||||||||| | |||||| | Sbjct 487 TTCAATCGGTAGGA-GCGACGGGCAGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 430 Query 122 GCT 124 ||| Sbjct 429 GCT 427 >seq420198 Length=9626 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | | ||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1615 TTCAATCGGTAGGAGG-GACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1558 Query 122 GCT 124 ||| Sbjct 1557 GCT 1555 >seq186638 Length=10844 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | |||||||| || |||||||||||||||||||||| | |||||| | Sbjct 5022 TTCAATCGGTAGGA-GCGACGGGTGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 5079 Query 122 GCT 124 ||| Sbjct 5080 GCT 5082 >seq162806 Length=11544 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||| ||| | |||||| | Sbjct 1612 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGATGTAGT-CAACGCGA 1669 Query 122 GCT 124 ||| Sbjct 1670 GCT 1672 >seq123374 Length=60777 Score = 71.6 bits (78), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109 |||| | |||||| || |||||| | ||||||||||| ||||||||||||||||||| | Sbjct 54939 TCACCAGACCATTTAAT-CGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACAT 54996 Query 110 AATACAACGCAAGCT 124 | | |||||| |||| Sbjct 54997 AGT-CAACGCGAGCT 55010 >seq47819 Length=2235 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | ||||| | Sbjct 1129 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGTGA 1186 Query 122 GCT 124 ||| Sbjct 1187 GCT 1189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299317731860