Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001383.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
seq320802 118 4e-24
seq378836 104 8e-20
seq102571 89.7 2e-15
seq268621 84.2 7e-14
>seq320802
Length=305
Score = 118 bits (130), Expect = 4e-24
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 90 TGACGAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCAC 149
|||||||||||||| | || ||| |||||||||| || || || | | || || || |
Sbjct 251 TGACGAAGTTCTGCACGGTCAGGCCGGCCATCTGGCTCAGGTAGCTCAGGGTGGCTTCGC 192
Query 150 CGCTGTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGG 209
|||||| | |||||||||||| ||| | ||||||| ||||||| || || ||| |
Sbjct 191 CGCTGTAGGCCTGCCAGTTGGTGTTGCCGACGAAACTGGCGGCGGTGTTGAAGGCCAGCG 132
Query 210 TCCATTCCTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAG 249
|||| || |||||||||| |||||||||||| || ||
Sbjct 131 TCCACTCGACGCCCGGCAGGCCTTGCGGGTTCAGGGGCAG 92
>seq378836
Length=1701
Score = 104 bits (114), Expect = 8e-20
Identities = 165/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 94 GAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACCGCT 153
|||||||||| | |||||| | ||||||||||| |||| | | | || ||| ||||
Sbjct 862 GAAGTTCTGCACGGTGAGGCCCGCCATCTGACTGAGATGGCTGAGCGTCGTCTCGCCGCC 803
Query 154 GTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCC- 212
|| | |||||||||| || ||||||| ||| ||||| || || || | | || | |
Sbjct 802 GTAGCTCTGCCAGTTCGTGTTGGTCACGAACGACACGGCCGTGTTGAA-GGCGAGATGCG 744
Query 213 -ATTCCTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAATA 271
| | | ||||| | ||||||||||||||| ||| || | || | ||| |
Sbjct 743 GAGACAT-GCCCGAGAACCCTTGCGGGTTCAGCGGCAGGAAGGCCTGGAGGCGCAGCAGC 685
Query 272 GAGAACAGCAGCAGGAAGCCGGCGAGGTTGAATGCGAGCAAGGCCAGCATGTA 324
| |||| ||||||||||| || |||||| ||||||| ||| ||| ||||
Sbjct 684 AGGTACAGGAGCAGGAAGCCCGCCGCGTTGAAGGCGAGCATGGCGAGCGTGTA 632
>seq102571
Length=228
Score = 89.7 bits (98), Expect = 2e-15
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 91 GACGAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACC 150
|| |||||||||| |||| ||| || ||||||| || | ||| | | | |||||
Sbjct 28 GAGGAAGTTCTGCACCGTCAGGCCGACCATCTGGCTAAAGTAACTCAGCGTGCTTTCACC 87
Query 151 GCTGTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGT 210
| | | ||||||||||||||| | | || ||||| || || || | |||| ||||
Sbjct 88 GGCATAGGATTGCCAGTTGGTATTGCTGACAAAGCTGACCGCAGTGTTGAGCGCC-AGGT 146
Query 211 -CCATTCCTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAA 269
||| |||| |||||||| |||||||||||||| ||| |||||| | | ||| |
Sbjct 147 GCCAGGAGAGGCCTGGCAGGTTCTGCGGGTTCAGCGGCAGGATGCCTTGCAGCATCAGCA 206
Query 270 TAGAGAACAGCAG 282
| ||||||||
Sbjct 207 GGGCAAACAGCAG 219
>seq268621
Length=13406
Score = 84.2 bits (92), Expect = 7e-14
Identities = 116/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 91 GACGAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACC 150
|| |||||||||| |||| ||| | |||||||||| | ||| | | || ||||||
Sbjct 175 GAGGAAGTTCTGCACCGTAAGGCCCACCATCTGACTGAAATAGCTCAGGGTGCTCTCACC 116
Query 151 GCTGTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGT 210
||||| | |||||||||||| ||||| | || |||| |||||| || | ||| || |
Sbjct 115 GCTGTAGGACTGCCAGTTGGTGTTGGTGACAAAGCTGATGGCGGTGTTGAGTGCC-AGAT 57
Query 211 -CCATTCCTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAG 249
||| | |||| ||||| | || || || ||||| ||
Sbjct 56 GCCAGCTCAGGCCAGGCAGCTGCTGTGGATTAAGCGGCAG 17
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1683902186144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |