Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001383.1 Length=561 Score E Sequences producing significant alignments: (Bits) Value seq320802 118 4e-24 seq378836 104 8e-20 seq102571 89.7 2e-15 seq268621 84.2 7e-14 >seq320802 Length=305 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 90 TGACGAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCAC 149 |||||||||||||| | || ||| |||||||||| || || || | | || || || | Sbjct 251 TGACGAAGTTCTGCACGGTCAGGCCGGCCATCTGGCTCAGGTAGCTCAGGGTGGCTTCGC 192 Query 150 CGCTGTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGG 209 |||||| | |||||||||||| ||| | ||||||| ||||||| || || ||| | Sbjct 191 CGCTGTAGGCCTGCCAGTTGGTGTTGCCGACGAAACTGGCGGCGGTGTTGAAGGCCAGCG 132 Query 210 TCCATTCCTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAG 249 |||| || |||||||||| |||||||||||| || || Sbjct 131 TCCACTCGACGCCCGGCAGGCCTTGCGGGTTCAGGGGCAG 92 >seq378836 Length=1701 Score = 104 bits (114), Expect = 8e-20 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 94 GAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACCGCT 153 |||||||||| | |||||| | ||||||||||| |||| | | | || ||| |||| Sbjct 862 GAAGTTCTGCACGGTGAGGCCCGCCATCTGACTGAGATGGCTGAGCGTCGTCTCGCCGCC 803 Query 154 GTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCC- 212 || | |||||||||| || ||||||| ||| ||||| || || || | | || | | Sbjct 802 GTAGCTCTGCCAGTTCGTGTTGGTCACGAACGACACGGCCGTGTTGAA-GGCGAGATGCG 744 Query 213 -ATTCCTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAATA 271 | | | ||||| | ||||||||||||||| ||| || | || | ||| | Sbjct 743 GAGACAT-GCCCGAGAACCCTTGCGGGTTCAGCGGCAGGAAGGCCTGGAGGCGCAGCAGC 685 Query 272 GAGAACAGCAGCAGGAAGCCGGCGAGGTTGAATGCGAGCAAGGCCAGCATGTA 324 | |||| ||||||||||| || |||||| ||||||| ||| ||| |||| Sbjct 684 AGGTACAGGAGCAGGAAGCCCGCCGCGTTGAAGGCGAGCATGGCGAGCGTGTA 632 >seq102571 Length=228 Score = 89.7 bits (98), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 91 GACGAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACC 150 || |||||||||| |||| ||| || ||||||| || | ||| | | | ||||| Sbjct 28 GAGGAAGTTCTGCACCGTCAGGCCGACCATCTGGCTAAAGTAACTCAGCGTGCTTTCACC 87 Query 151 GCTGTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGT 210 | | | ||||||||||||||| | | || ||||| || || || | |||| |||| Sbjct 88 GGCATAGGATTGCCAGTTGGTATTGCTGACAAAGCTGACCGCAGTGTTGAGCGCC-AGGT 146 Query 211 -CCATTCCTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAA 269 ||| |||| |||||||| |||||||||||||| ||| |||||| | | ||| | Sbjct 147 GCCAGGAGAGGCCTGGCAGGTTCTGCGGGTTCAGCGGCAGGATGCCTTGCAGCATCAGCA 206 Query 270 TAGAGAACAGCAG 282 | |||||||| Sbjct 207 GGGCAAACAGCAG 219 >seq268621 Length=13406 Score = 84.2 bits (92), Expect = 7e-14 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 91 GACGAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACC 150 || |||||||||| |||| ||| | |||||||||| | ||| | | || |||||| Sbjct 175 GAGGAAGTTCTGCACCGTAAGGCCCACCATCTGACTGAAATAGCTCAGGGTGCTCTCACC 116 Query 151 GCTGTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGT 210 ||||| | |||||||||||| ||||| | || |||| |||||| || | ||| || | Sbjct 115 GCTGTAGGACTGCCAGTTGGTGTTGGTGACAAAGCTGATGGCGGTGTTGAGTGCC-AGAT 57 Query 211 -CCATTCCTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAG 249 ||| | |||| ||||| | || || || ||||| || Sbjct 56 GCCAGCTCAGGCCAGGCAGCTGCTGTGGATTAAGCGGCAG 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1683902186144