Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001416.1
Length=341
Score E
Sequences producing significant alignments: (Bits) Value
seq186571 352 6e-95
seq361699 273 4e-71
seq523534 199 8e-49
seq357491 172 1e-40
seq517749 89.7 1e-15
seq145246 78.8 2e-12
>seq186571
Length=3122
Score = 352 bits (390), Expect = 6e-95
Identities = 283/339 (83%), Gaps = 2/339 (1%)
Strand=Plus/Plus
Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60
||| || |||||| | | | ||||| || || ||||||||| ||||||| ||||||||
Sbjct 2394 CGATTTCAGCTTGTTGCCGATCGGCAGCAGCAGCAGGTTGGCGATGGCCACACCGTAGAT 2453
Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120
|||||| || ||||||||||| |||||||| |||| | |||||||| || |||||
Sbjct 2454 GGTGGCAACGAACGCCACGGCGATGCCGCTACCCAAGAGGCTGGGGTCGGCCAGATTGCC 2513
Query 121 CATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCC 180
|||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 2514 CATCACGTGGATCAAGCCCATGACCGCACCGATGATGCCGATGGTCGGTGCGTAGCCGCC 2573
Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240
||||| || |||| |||||||| | ||| ||||||||||||||||| ||||| ||||
Sbjct 2574 CATGCACTCGAAGAACTTGGCGGCCTGGATGTCGCGGCTTTCCTGGGT-GTAGAGGTCCA 2632
Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300
| || ||| |||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 2633 CCTCGAGAATGCTGCGAATGGCTTCCGGCTCGGCGCCGTCGACCAGCAGTTGCAGGCCCT 2692
Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCA-CGCCT 338
||||||| ||| ||||| ||| ||||||| | |||||
Sbjct 2693 TGCGCGCATAGGGGTCGGCTTCGCCATCGGCGACCGCCT 2731
>seq361699
Length=245
Score = 273 bits (302), Expect = 4e-71
Identities = 207/243 (85%), Gaps = 1/243 (0%)
Strand=Plus/Minus
Query 98 TGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGATCAGGCCCATCACCGCACCGATGATG 157
|||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 245 TGCGCCGGGTCGGCCAGGTTGCCCATGACGTGGATCAGGCCCATCACCGCGCCGATGATC 186
Query 158 CCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGG 217
||||||||||||||||||||||||||||| || |||||||||||||| | | || |||
Sbjct 185 CCGATGGTCGGCGCGTAGCCGCCCATGCTCTCGAAGACTTTGGCGGCCTGCAGGTCACGG 126
Query 218 CTTTCCTGGGTGGTAGAAATCCACTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCC 277
||||||||||| |||||||||||| | | |||||||| ||||| |||||||| ||
Sbjct 125 CTTTCCTGGGT-CAGGAAATCCACTTCAAGGATACTGCGAATGGCTTCGGGCTCGGCACC 67
Query 278 GTCCACCAGCAGTTGCAGGCCTTTGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCC 337
||| ||||||| |||| ||| |||||||||||| ||||||||| |||||||||| ||
Sbjct 66 GTCGACCAGCAACTGCAAGCCCTTGCGCGCGTAGGGATCGGGCTCGCCATCGGCCACCCC 7
Query 338 TTC 340
|||
Sbjct 6 TTC 4
>seq523534
Length=533
Score = 199 bits (220), Expect = 8e-49
Identities = 172/212 (81%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 91 GCCCAGTTGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGATCAGGCCCATCACCGCACC 150
|||||||||||| || |||||||| || ||| ||||||||||||||||||||||| ||
Sbjct 278 GCCCAGTTGCGAGGGATCGGCGAGATTCTGCATGACGTGGATCAGGCCCATCACCGCGCC 337
Query 151 GATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAAAGACTTTGGCGGCGTTGAT 210
|||||| || | || ||||| |||||||||||| |||| |||| ||||||||| |||
Sbjct 338 GATGATACCCACCGTGGGCGCATAGCCGCCCATGGCTTCATAGACCTTGGCGGCGGCGAT 397
Query 211 ATCGCGGCTTTCCTGGGTGGTAGAAATCCACTTCCCGAAGTCTGCGAATCGCTTCCGGCT 270
|||||| ||||| || ||||| ||||| || | | ||||| | ||||| ||||
Sbjct 398 GTCGCGGTCTTCCT-GGCCGTAGAGGTCCACCTCGAGGATGCTGCGCAGGGCTTCGGGCT 456
Query 271 CGGCGCCGTCCACCAGCAGTTGCAGGCCTTTG 302
||| |||||||||||||||||||||||| |||
Sbjct 457 CGGTGCCGTCCACCAGCAGTTGCAGGCCCTTG 488
Score = 143 bits (158), Expect = 5e-32
Identities = 115/139 (83%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60
|| |||||||||| | | || |||| ||||| ||||||||| | | || || |||||
Sbjct 119 CGCCTTGAGCTTGTTGCCGACGGGCAGCAACAGCAGGTTGGCGAAGCCGACCCCATAGAT 178
Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120
|||||||||||| |||||||| |||||||||||||||||||| || |||||||| ||
Sbjct 179 GGTGGCGACAAAGGCCACGGCGATGCCGCTGCCCAGTTGCGAGGGATCGGCGAGATTCTG 238
Query 121 CATCACGTGGATCAGGCCC 139
||| |||||||||||||||
Sbjct 239 CATGACGTGGATCAGGCCC 257
>seq357491
Length=477
Score = 172 bits (190), Expect = 1e-40
Identities = 142/172 (83%), Gaps = 1/172 (1%)
Strand=Plus/Plus
Query 169 CGCGTAGCCGCCCATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGT 228
||| ||||||||||||| || ||| |||||||| | |||||| ||||||||||||||
Sbjct 1 CGCATAGCCGCCCATGCACTCGTAGAACTTGGCGGCCTGGATATCACGGCTTTCCTGGGT 60
Query 229 GGTAGAAATCCACTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCA 288
| |||| ||| ||||| | | |||||||| ||||||||||| || ||||| |||||||
Sbjct 61 G-TAGAGATCGACTTCGAGGATGCTGCGAATGGCTTCCGGCTCAGCACCGTCGACCAGCA 119
Query 289 GTTGCAGGCCTTTGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340
|||||||||| |||||||||||| ||||||||| ||||||| || ||||
Sbjct 120 GTTGCAGGCCCTTGCGCGCGTAGGGATCGGGCTCGCCATCGGCGACCGCTTC 171
>seq517749
Length=210
Score = 89.7 bits (98), Expect = 1e-15
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 2 GACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATG 61
|| || |||||| | | | |||||||||| |||||||| ||||||| |||||||||
Sbjct 89 GATTTCAGCTTGTTGCCGATGGGCAACAACAAGAGGTTGGCGATGGCCACACCGTAGATG 30
Query 62 GTGGCGACAAACGCCACGGCAATGCCGCT 90
||||| || |||||||| |||||||||||
Sbjct 29 GTGGCAACGAACGCCACCGCAATGCCGCT 1
>seq145246
Length=3666
Score = 78.8 bits (86), Expect = 2e-12
Identities = 128/179 (72%), Gaps = 4/179 (2%)
Strand=Plus/Minus
Query 7 GAGCTTGCTCGCC-ACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATGGTGG 65
|||||||| |||| | |||| | | | | |||||| ||| || ||| ||| |||||
Sbjct 1585 GAGCTTGC-CGCCGATCGGCGCCCAGAAGAAGTTGGCGCTGAGCAGGCCCCAGAGGGTGG 1527
Query 66 CGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGG-TCGGCGAGGTTGCCCATC 124
|||| |||||| |||| || | ||| || | || ||| | | ||||||| | | |
Sbjct 1526 CGACGAACGCCGCGGCGATCATGTGGCCGAGCT-CGTCGGGCTTGTCGAGGTTCTCGAGC 1468
Query 125 ACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCAT 183
||||| | || | |||| |||| |||||||||||| |||||||||||| ||||
Sbjct 1467 ACGTGCGTGAGCGAGACGACCGTGCCGACGATGCCGATGGTGGGCGCGTAGCCGGCCAT 1409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 983602600224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |