Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001416.1 Length=341 Score E Sequences producing significant alignments: (Bits) Value seq186571 352 6e-95 seq361699 273 4e-71 seq523534 199 8e-49 seq357491 172 1e-40 seq517749 89.7 1e-15 seq145246 78.8 2e-12 >seq186571 Length=3122 Score = 352 bits (390), Expect = 6e-95 Identities = 283/339 (83%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60 ||| || |||||| | | | ||||| || || ||||||||| ||||||| |||||||| Sbjct 2394 CGATTTCAGCTTGTTGCCGATCGGCAGCAGCAGCAGGTTGGCGATGGCCACACCGTAGAT 2453 Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120 |||||| || ||||||||||| |||||||| |||| | |||||||| || ||||| Sbjct 2454 GGTGGCAACGAACGCCACGGCGATGCCGCTACCCAAGAGGCTGGGGTCGGCCAGATTGCC 2513 Query 121 CATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCC 180 |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 2514 CATCACGTGGATCAAGCCCATGACCGCACCGATGATGCCGATGGTCGGTGCGTAGCCGCC 2573 Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240 ||||| || |||| |||||||| | ||| ||||||||||||||||| ||||| |||| Sbjct 2574 CATGCACTCGAAGAACTTGGCGGCCTGGATGTCGCGGCTTTCCTGGGT-GTAGAGGTCCA 2632 Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300 | || ||| |||||||| |||||||||||||||||||| ||||||||||||||||| | Sbjct 2633 CCTCGAGAATGCTGCGAATGGCTTCCGGCTCGGCGCCGTCGACCAGCAGTTGCAGGCCCT 2692 Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCA-CGCCT 338 ||||||| ||| ||||| ||| ||||||| | ||||| Sbjct 2693 TGCGCGCATAGGGGTCGGCTTCGCCATCGGCGACCGCCT 2731 >seq361699 Length=245 Score = 273 bits (302), Expect = 4e-71 Identities = 207/243 (85%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 98 TGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGATCAGGCCCATCACCGCACCGATGATG 157 |||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 245 TGCGCCGGGTCGGCCAGGTTGCCCATGACGTGGATCAGGCCCATCACCGCGCCGATGATC 186 Query 158 CCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGG 217 ||||||||||||||||||||||||||||| || |||||||||||||| | | || ||| Sbjct 185 CCGATGGTCGGCGCGTAGCCGCCCATGCTCTCGAAGACTTTGGCGGCCTGCAGGTCACGG 126 Query 218 CTTTCCTGGGTGGTAGAAATCCACTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCC 277 ||||||||||| |||||||||||| | | |||||||| ||||| |||||||| || Sbjct 125 CTTTCCTGGGT-CAGGAAATCCACTTCAAGGATACTGCGAATGGCTTCGGGCTCGGCACC 67 Query 278 GTCCACCAGCAGTTGCAGGCCTTTGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCC 337 ||| ||||||| |||| ||| |||||||||||| ||||||||| |||||||||| || Sbjct 66 GTCGACCAGCAACTGCAAGCCCTTGCGCGCGTAGGGATCGGGCTCGCCATCGGCCACCCC 7 Query 338 TTC 340 ||| Sbjct 6 TTC 4 >seq523534 Length=533 Score = 199 bits (220), Expect = 8e-49 Identities = 172/212 (81%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 91 GCCCAGTTGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGATCAGGCCCATCACCGCACC 150 |||||||||||| || |||||||| || ||| ||||||||||||||||||||||| || Sbjct 278 GCCCAGTTGCGAGGGATCGGCGAGATTCTGCATGACGTGGATCAGGCCCATCACCGCGCC 337 Query 151 GATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAAAGACTTTGGCGGCGTTGAT 210 |||||| || | || ||||| |||||||||||| |||| |||| ||||||||| ||| Sbjct 338 GATGATACCCACCGTGGGCGCATAGCCGCCCATGGCTTCATAGACCTTGGCGGCGGCGAT 397 Query 211 ATCGCGGCTTTCCTGGGTGGTAGAAATCCACTTCCCGAAGTCTGCGAATCGCTTCCGGCT 270 |||||| ||||| || ||||| ||||| || | | ||||| | ||||| |||| Sbjct 398 GTCGCGGTCTTCCT-GGCCGTAGAGGTCCACCTCGAGGATGCTGCGCAGGGCTTCGGGCT 456 Query 271 CGGCGCCGTCCACCAGCAGTTGCAGGCCTTTG 302 ||| |||||||||||||||||||||||| ||| Sbjct 457 CGGTGCCGTCCACCAGCAGTTGCAGGCCCTTG 488 Score = 143 bits (158), Expect = 5e-32 Identities = 115/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60 || |||||||||| | | || |||| ||||| ||||||||| | | || || ||||| Sbjct 119 CGCCTTGAGCTTGTTGCCGACGGGCAGCAACAGCAGGTTGGCGAAGCCGACCCCATAGAT 178 Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120 |||||||||||| |||||||| |||||||||||||||||||| || |||||||| || Sbjct 179 GGTGGCGACAAAGGCCACGGCGATGCCGCTGCCCAGTTGCGAGGGATCGGCGAGATTCTG 238 Query 121 CATCACGTGGATCAGGCCC 139 ||| ||||||||||||||| Sbjct 239 CATGACGTGGATCAGGCCC 257 >seq357491 Length=477 Score = 172 bits (190), Expect = 1e-40 Identities = 142/172 (83%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 169 CGCGTAGCCGCCCATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGT 228 ||| ||||||||||||| || ||| |||||||| | |||||| |||||||||||||| Sbjct 1 CGCATAGCCGCCCATGCACTCGTAGAACTTGGCGGCCTGGATATCACGGCTTTCCTGGGT 60 Query 229 GGTAGAAATCCACTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCA 288 | |||| ||| ||||| | | |||||||| ||||||||||| || ||||| ||||||| Sbjct 61 G-TAGAGATCGACTTCGAGGATGCTGCGAATGGCTTCCGGCTCAGCACCGTCGACCAGCA 119 Query 289 GTTGCAGGCCTTTGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340 |||||||||| |||||||||||| ||||||||| ||||||| || |||| Sbjct 120 GTTGCAGGCCCTTGCGCGCGTAGGGATCGGGCTCGCCATCGGCGACCGCTTC 171 >seq517749 Length=210 Score = 89.7 bits (98), Expect = 1e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 2 GACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATG 61 || || |||||| | | | |||||||||| |||||||| ||||||| ||||||||| Sbjct 89 GATTTCAGCTTGTTGCCGATGGGCAACAACAAGAGGTTGGCGATGGCCACACCGTAGATG 30 Query 62 GTGGCGACAAACGCCACGGCAATGCCGCT 90 ||||| || |||||||| ||||||||||| Sbjct 29 GTGGCAACGAACGCCACCGCAATGCCGCT 1 >seq145246 Length=3666 Score = 78.8 bits (86), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 7 GAGCTTGCTCGCC-ACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATGGTGG 65 |||||||| |||| | |||| | | | | |||||| ||| || ||| ||| ||||| Sbjct 1585 GAGCTTGC-CGCCGATCGGCGCCCAGAAGAAGTTGGCGCTGAGCAGGCCCCAGAGGGTGG 1527 Query 66 CGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGG-TCGGCGAGGTTGCCCATC 124 |||| |||||| |||| || | ||| || | || ||| | | ||||||| | | | Sbjct 1526 CGACGAACGCCGCGGCGATCATGTGGCCGAGCT-CGTCGGGCTTGTCGAGGTTCTCGAGC 1468 Query 125 ACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCAT 183 ||||| | || | |||| |||| |||||||||||| |||||||||||| |||| Sbjct 1467 ACGTGCGTGAGCGAGACGACCGTGCCGACGATGCCGATGGTGGGCGCGTAGCCGGCCAT 1409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983602600224