Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001435.1
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
seq256701 248 3e-63
seq493848 224 4e-56
seq203259 205 3e-50
seq487937 150 6e-34
seq160808 105 2e-20
>seq256701
Length=1678
Score = 248 bits (274), Expect = 3e-63
Identities = 193/230 (84%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60
|| ||||||||||||||||| ||||| || ||||| ||||| |||||||||||||||||
Sbjct 231 TCCATGTACGGCGGTGGTTTCGCCACCGTGCCGGCCTACCTCGCCGACCTGTTCGGTACC 172
Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120
||||||||||| || || |||||||||||||| ||||||||||| || || ||||||||
Sbjct 171 CAGATGGTCGGCGCCATTCACGGTCGCCTGCTCACCGCCTGGGCCGCCGCCGGCGTCTTC 112
Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180
|| |||||| |||| ||||| ||||| ||||||||||||||||| || | |||||
Sbjct 111 GGTCCGGTGCTGGTCAACTACCTGCGCGAGTATCAGTTGAGCATGGGTATCCCCCGCGCC 52
Query 181 GCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGG 230
|| || ||||||||| |||||||||| || || ||||||||||||||
Sbjct 51 CAGGTGTACGACATCACCCTGTACATCCTGGCCGGTCTGCTGGTGCTGGG 2
>seq493848
Length=1463
Score = 224 bits (248), Expect = 4e-56
Identities = 263/350 (75%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60
|||||||||||||| || || ||||| || ||||| || || ||||| |||||||| ||
Sbjct 353 TCGATGTACGGCGGCGGCTTCGCCACCGTGCCGGCGTATCTTGCCGATCTGTTCGGCACC 412
Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120
||| ||||| ||||||||||| |||||||||||||||||||| | || ||| || |
Sbjct 413 CAGCACGTCGGCGCGATCCACGGCCGCCTGCTGACCGCCTGGGCGACCGCCGGCATCCTC 472
Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180
|||||| | | | ||| |||| ||||| ||| ||||| ||||| || ||
Sbjct 473 GGCCCGTTCGTCATCGGCTACATGCGCGAGTACCAGCTGAGCCTCGGC-ATGCCGCCGTC 531
Query 181 GC-GGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTG 239
|| || ||| ||| ||| ||||||||||||| ||| ||||||||||||| | |||||
Sbjct 532 GCAGGTCTACAACACCACGATGTACATCCTCGCCGGCATGCTGGTGCTGGGCCTGATCTG 591
Query 240 CAACCTGCTGGTGCGTCCGGTGGCCGACAAGTACTTCATGACCGACGCCGAACTGGCCGC 299
||||||||||||||| ||||| | |||||||||||| | || ||||||||
Sbjct 592 CAACCTGCTGGTGCGCCCGGTCAACCCGAAGTACTTCATGTCGCCCGAGGAACTGGCGCA 651
Query 300 CGAGCAAGC-GCTGGGGCATGACAAAGGCGCCGACGCCAGCACGTCCCTG 348
|||| |||| ||||| ||| || || | || || | | ||| ||| |||
Sbjct 652 CGAG-AAGCAGCTGGCGCACGAGAAGGTCGACGCCTCGGGCAAGTCGCTG 700
>seq203259
Length=634
Score = 205 bits (226), Expect = 3e-50
Identities = 139/156 (89%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60
|| ||||||||||| ||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 156 TCCATGTACGGCGGCGGTTTCGCGACCGTTCCGGCTTACCTGGCCGACCTGTTCGGCACC 97
Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 96 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCCTTCGCCGGCGTGCTG 37
Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAG 156
||||||||| |||| ||||| |||||||||||||||
Sbjct 36 GGCCCGGTGCTGGTCAACTACCTGCGTGAGTATCAG 1
>seq487937
Length=238
Score = 150 bits (166), Expect = 6e-34
Identities = 165/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60
|||||||||||||| || || ||||| || ||||| || || ||||| |||||||| ||
Sbjct 23 TCGATGTACGGCGGCGGCTTCGCCACCGTGCCGGCGTATCTCGCCGATCTGTTCGGCACC 82
Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120
||| ||||| ||||||||||| || ||||||||||||||||| | || ||| || |
Sbjct 83 CAGCACGTCGGCGCGATCCACGGCCGGCTGCTGACCGCCTGGGCGACCGCCGGCATCCTC 142
Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180
|||||| || || | ||| |||| ||| ||||| ||||| ||||| || ||
Sbjct 143 GGCCCGCTGGTGATCGGCTACATGCGCGAGCATCAGCTGAGCCTCGGC-ATGCCGCCGTC 201
Query 181 GC-GGCCTATGACATCACCTTGTACATCCTCGCTGGC 216
|| || ||| ||| ||| ||||||||||||| |||
Sbjct 202 GCAGGTCTACAACACCACGATGTACATCCTCGCCGGC 238
>seq160808
Length=292
Score = 105 bits (116), Expect = 2e-20
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 18 TTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACGCAGATGGTCGGTGCGAT 77
||| || || ||||||| || || |||||| | ||||| |||||| | ||||| |||||
Sbjct 1 TTTCGCTACCATTCCGGCCTATCTCGCCGACATCTTCGGCACGCAGTTCGTCGGCGCGAT 60
Query 78 CCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTGGGCCCGGTGTTGGTGAA 137
||||||||| |||||||| ||||||||| | || ||| || | || || || | || ||
Sbjct 61 CCACGGTCGTCTGCTGACGGCCTGGGCAACAGCCGGCATCGTCGGTCCAGTCGTCGTCAA 120
Query 138 CTATCTGCGTGAG 150
||| | ||||||
Sbjct 121 CTACATCCGTGAG 133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1766664864480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |