Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001435.1 Length=587 Score E Sequences producing significant alignments: (Bits) Value seq256701 248 3e-63 seq493848 224 4e-56 seq203259 205 3e-50 seq487937 150 6e-34 seq160808 105 2e-20 >seq256701 Length=1678 Score = 248 bits (274), Expect = 3e-63 Identities = 193/230 (84%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 || ||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||||| Sbjct 231 TCCATGTACGGCGGTGGTTTCGCCACCGTGCCGGCCTACCTCGCCGACCTGTTCGGTACC 172 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 ||||||||||| || || |||||||||||||| ||||||||||| || || |||||||| Sbjct 171 CAGATGGTCGGCGCCATTCACGGTCGCCTGCTCACCGCCTGGGCCGCCGCCGGCGTCTTC 112 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180 || |||||| |||| ||||| ||||| ||||||||||||||||| || | ||||| Sbjct 111 GGTCCGGTGCTGGTCAACTACCTGCGCGAGTATCAGTTGAGCATGGGTATCCCCCGCGCC 52 Query 181 GCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGG 230 || || ||||||||| |||||||||| || || |||||||||||||| Sbjct 51 CAGGTGTACGACATCACCCTGTACATCCTGGCCGGTCTGCTGGTGCTGGG 2 >seq493848 Length=1463 Score = 224 bits (248), Expect = 4e-56 Identities = 263/350 (75%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||||||||| || || ||||| || ||||| || || ||||| |||||||| || Sbjct 353 TCGATGTACGGCGGCGGCTTCGCCACCGTGCCGGCGTATCTTGCCGATCTGTTCGGCACC 412 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 ||| ||||| ||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 413 CAGCACGTCGGCGCGATCCACGGCCGCCTGCTGACCGCCTGGGCGACCGCCGGCATCCTC 472 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180 |||||| | | | ||| |||| ||||| ||| ||||| ||||| || || Sbjct 473 GGCCCGTTCGTCATCGGCTACATGCGCGAGTACCAGCTGAGCCTCGGC-ATGCCGCCGTC 531 Query 181 GC-GGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTG 239 || || ||| ||| ||| ||||||||||||| ||| ||||||||||||| | ||||| Sbjct 532 GCAGGTCTACAACACCACGATGTACATCCTCGCCGGCATGCTGGTGCTGGGCCTGATCTG 591 Query 240 CAACCTGCTGGTGCGTCCGGTGGCCGACAAGTACTTCATGACCGACGCCGAACTGGCCGC 299 ||||||||||||||| ||||| | |||||||||||| | || |||||||| Sbjct 592 CAACCTGCTGGTGCGCCCGGTCAACCCGAAGTACTTCATGTCGCCCGAGGAACTGGCGCA 651 Query 300 CGAGCAAGC-GCTGGGGCATGACAAAGGCGCCGACGCCAGCACGTCCCTG 348 |||| |||| ||||| ||| || || | || || | | ||| ||| ||| Sbjct 652 CGAG-AAGCAGCTGGCGCACGAGAAGGTCGACGCCTCGGGCAAGTCGCTG 700 >seq203259 Length=634 Score = 205 bits (226), Expect = 3e-50 Identities = 139/156 (89%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 || ||||||||||| ||||| || || ||||||||||||||||||||||||||||| || Sbjct 156 TCCATGTACGGCGGCGGTTTCGCGACCGTTCCGGCTTACCTGGCCGACCTGTTCGGCACC 97 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 |||||||||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct 96 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCCTTCGCCGGCGTGCTG 37 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAG 156 ||||||||| |||| ||||| ||||||||||||||| Sbjct 36 GGCCCGGTGCTGGTCAACTACCTGCGTGAGTATCAG 1 >seq487937 Length=238 Score = 150 bits (166), Expect = 6e-34 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||||||||| || || ||||| || ||||| || || ||||| |||||||| || Sbjct 23 TCGATGTACGGCGGCGGCTTCGCCACCGTGCCGGCGTATCTCGCCGATCTGTTCGGCACC 82 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 ||| ||||| ||||||||||| || ||||||||||||||||| | || ||| || | Sbjct 83 CAGCACGTCGGCGCGATCCACGGCCGGCTGCTGACCGCCTGGGCGACCGCCGGCATCCTC 142 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180 |||||| || || | ||| |||| ||| ||||| ||||| ||||| || || Sbjct 143 GGCCCGCTGGTGATCGGCTACATGCGCGAGCATCAGCTGAGCCTCGGC-ATGCCGCCGTC 201 Query 181 GC-GGCCTATGACATCACCTTGTACATCCTCGCTGGC 216 || || ||| ||| ||| ||||||||||||| ||| Sbjct 202 GCAGGTCTACAACACCACGATGTACATCCTCGCCGGC 238 >seq160808 Length=292 Score = 105 bits (116), Expect = 2e-20 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 18 TTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACGCAGATGGTCGGTGCGAT 77 ||| || || ||||||| || || |||||| | ||||| |||||| | ||||| ||||| Sbjct 1 TTTCGCTACCATTCCGGCCTATCTCGCCGACATCTTCGGCACGCAGTTCGTCGGCGCGAT 60 Query 78 CCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTGGGCCCGGTGTTGGTGAA 137 ||||||||| |||||||| ||||||||| | || ||| || | || || || | || || Sbjct 61 CCACGGTCGTCTGCTGACGGCCTGGGCAACAGCCGGCATCGTCGGTCCAGTCGTCGTCAA 120 Query 138 CTATCTGCGTGAG 150 ||| | |||||| Sbjct 121 CTACATCCGTGAG 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1766664864480