Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001436.1
Length=198
Score E
Sequences producing significant alignments: (Bits) Value
seq364769 232 7e-59
seq43493 223 4e-56
seq341626 217 2e-54
seq35964 181 1e-43
seq377734 125 8e-27
seq339205 113 5e-23
seq207838 109 6e-22
seq477654 98.7 1e-18
seq131643 95.1 1e-17
seq93049 86.0 7e-15
seq6808 80.6 3e-13
>seq364769
Length=2873
Score = 232 bits (256), Expect = 7e-59
Identities = 170/198 (86%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60
||||||| |||| |||||| | ||| |||| ||| ||| ||||||||||||| || ||
Sbjct 510 CGACCTTCTTGCCCGCCTTGAGGCGACGGCTGGCATTGCTGATCGCCAGCTCGGCGAGCT 569
Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120
| |||| | ||||| || |||||||||||||||||||||||||||||||||| || |
Sbjct 570 GCTGGCCGAACTCCGGGTGGGCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACACCGG 629
Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCG 180
|||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 630 AGACGAAGGCCGAGGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGGCCGGAGAATTGCG 689
Query 181 GTTCCTGCATCTTCATCG 198
| ||||||||||||||||
Sbjct 690 GCTCCTGCATCTTCATCG 707
>seq43493
Length=737
Score = 223 bits (246), Expect = 4e-56
Identities = 168/198 (85%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60
||||||| |||| |||||| | || |||| ||||||| ||||||||||||| || ||
Sbjct 78 CGACCTTCTTGCCCGCCTTGAGACGACGGCTGGCGTTGCTGATCGCCAGCTCGGCGAGCT 137
Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120
| |||| | |||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct 138 GCTGGCCGAATTCCGGGTGGGCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCGG 197
Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCG 180
|||| || |||| |||||||| ||||||||||||||||||||||||||||| || || |
Sbjct 198 AGACGAAGGCCGAAGCCTCGCGCGACGACAGGCGCTCCTTGGTCTGCCCGGAAAACTGAG 257
Query 181 GTTCCTGCATCTTCATCG 198
||||||||||||||||
Sbjct 258 CGTCCTGCATCTTCATCG 275
>seq341626
Length=1271
Score = 217 bits (240), Expect = 2e-54
Identities = 167/198 (84%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60
||||||| |||| ||||| | ||| |||| ||| ||| ||||||||||||| || ||
Sbjct 665 CGACCTTCTTGCCGGCCTTGAGGCGGCGGCTGGCATTGCTGATCGCCAGCTCGGCGAGCT 724
Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120
| |||| | ||||| || |||||||||||||||||||||||||||||||||| || |
Sbjct 725 GCTGGCCGAACTCCGGGTGGGCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACACCGG 784
Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCG 180
|||| || |||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 785 AGACGAAGGCCGAGGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAACTGGG 844
Query 181 GTTCCTGCATCTTCATCG 198
||||||||||||||||
Sbjct 845 CGTCCTGCATCTTCATCG 862
>seq35964
Length=223
Score = 181 bits (200), Expect = 1e-43
Identities = 135/158 (85%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 41 GATCGCCAGCTCCGCCAGGGCCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAA 100
|||||||||||| || || | |||| | ||||| || |||||||||||||||||||
Sbjct 223 GATCGCCAGCTCGGCGAGCTGCTGGCCGAACTCCGGGTGGGCGTTGAGCCACAGGCTGAA 164
Query 101 GGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTT 160
|||||||||||||||||| ||||| || |||| |||||||| |||||||||||||||||
Sbjct 163 GGCGTCCTTGACCACGCCGGAGACGAAAGCCGAAGCCTCGCGCGACGACAGGCGCTCCTT 104
Query 161 GGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198
|||||||||||| || || | ||||||||||||||||
Sbjct 103 GGTCTGCCCGGAAAACTGGGCGTCCTGCATCTTCATCG 66
>seq377734
Length=6277
Score = 125 bits (138), Expect = 8e-27
Identities = 150/200 (75%), Gaps = 8/200 (4%)
Strand=Plus/Minus
Query 3 ACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCC 62
||||||||| ||| || ||||| |||| || ||||||||| || ||||| |
Sbjct 4300 ACCTTTTTGGCGGCCCGCATACGCCGCTGGGCGCTGGAGATCGCCAGTTCAGCCAG---C 4244
Query 63 AGGCC--CAGTTCCGGATGCTC--GTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCC 118
|| | | || | ||||| || ||| ||||||||||| ||||| ||||| ||||||||
Sbjct 4243 AGTTCTGCCGT-CTGGATGTTCTGGTTCAGCCACAGGCTAAAGGCATCCTTCACCACGCC 4185
Query 119 AGAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTG 178
|| ||||| || || || || || ||||||||||| |||||||| |||| || ||
Sbjct 4184 CGACACAAAGGCGGCACACTGACGTGATGACAGGCGCTCTTTGGTCTGACCGGCAAACTG 4125
Query 179 CGGTTCCTGCATCTTCATCG 198
||| ||||||||||||| ||
Sbjct 4124 CGGATCCTGCATCTTCACCG 4105
>seq339205
Length=499
Score = 113 bits (124), Expect = 5e-23
Identities = 146/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 1 CGACCTTTTTGCTCGC-CTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGG 59
||| || ||| |||| ||||| ||| || |||| | |||||| |||| || |
Sbjct 219 CGATCTGTTT-CTCGGTCTTCAGACGCGCGCTGGCGCGATCGATCGCGAGCTGGGCGATC 277
Query 60 GCCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCA 119
| ||| || |||| |||| |||||||||||||||||| || || | | ||||
Sbjct 278 TTCTCGCCGAGGTCCGTGTGCTGGTTGAGCCACAGGCTGAAAGCATCGTGCGCGGCGCCC 337
Query 120 GAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGC 179
||| || |||| |||| ||| |||||||| |||||||||||||| |||||||| |||
Sbjct 338 TCGACGAAACCCGCGGCCTGGCGCGACGACAGCCGCTCCTTGGTCTGGCCGGAGAACTGC 397
Query 180 GGTTCCTGCATCTTCATCG 198
|| || |||||||||||
Sbjct 398 GGATCGGTCATCTTCATCG 416
>seq207838
Length=369
Score = 109 bits (120), Expect = 6e-22
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 41 GATCGCCAGCTCCGCCAGGGCCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAA 100
||||||||||| || | ||| || ||| ||||| ||||||||||||||||||
Sbjct 198 GATCGCCAGCTGGGCGATCTGCAGTCCGGTCTCCACATGCTGGTTGAGCCACAGGCTGAA 257
Query 101 GGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTT 160
|||||| | | |||| || || | || |||| ||| || ||||||||||||||
Sbjct 258 GGCGTCGTGCGCGGCGCCCTCGATGAAGCCGGCGGCCTGGCGCGAGGACAGGCGCTCCTT 317
Query 161 GGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198
||||||||||||||| ||||| || |||||||| ||
Sbjct 318 GGTCTGCCCGGAGAACTGCGGGTCGGTCATCTTCAGCG 355
>seq477654
Length=271
Score = 98.7 bits (108), Expect = 1e-18
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60
||||||| |||| |||||| | ||| |||| ||||||| |||||||||| || || ||
Sbjct 104 CGACCTTCTTGCCCGCCTTGAGGCGGCGGCTGGCGTTGCTGATCGCCAGTTCGGCGAGCT 45
Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCG 104
| |||| | |||||| || |||||||||| ||||||||||||
Sbjct 44 GCTGGCCGAATTCCGGGTGAGCGTTGAGCCAAAGGCTGAAGGCG 1
>seq131643
Length=466
Score = 95.1 bits (104), Expect = 1e-17
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 97 TGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCT 156
||||||| || || |||||||| ||||| |||||||| || |||||| || || ||||
Sbjct 231 TGAAGGCATCTTTCACCACGCCGGAGACGAACGCCGCGCACTGGCGGGAGGAGAGACGCT 290
Query 157 CCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTT 193
| ||||||||||||| || ||||| |||||||| ||
Sbjct 291 CTTTGGTCTGCCCGGCAAACTGCGGATCCTGCATTTT 327
>seq93049
Length=1262
Score = 86.0 bits (94), Expect = 7e-15
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 84 TTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGG 143
|| ||||||||||||||||| || ||||||||| | || || || || || || |||
Sbjct 811 TTCAGCCACAGGCTGAAGGCATCTTTGACCACGGCTGACACGAAGGCGGCGCACTGGCGT 752
Query 144 GACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198
|| || | |||||| ||||| || |||| || || || |||||||| |||| ||
Sbjct 751 GAAGATAAGCGCTCTTTGGTTTGACCGGCAAACTGTGGATCCTGCATTTTCACCG 697
>seq6808
Length=231
Score = 80.6 bits (88), Expect = 3e-13
Identities = 98/134 (73%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 65 GCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGAC 124
|||||| ||| | || ||| ||| |||||||||||| || | | | |||| |||
Sbjct 37 GCCCAGCTCCACGTTCTGGTTCAGCAGCAGGCTGAAGGCATCGTGGGCGGCGCCTTCGAC 96
Query 125 AAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTC 184
|| | || |||| ||| || |||||||| ||||||||||| ||| ||| ||||| ||
Sbjct 97 GAAACCGGCGGCCTGGCGCGAGGACAGGCGTTCCTTGGTCTGGCCGCTGAACTGCGGATC 156
Query 185 CTGCATCTTCATCG 198
|||||||| ||
Sbjct 157 GGTCATCTTCAGCG 170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531678829021
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