Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001436.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq364769 232 7e-59 seq43493 223 4e-56 seq341626 217 2e-54 seq35964 181 1e-43 seq377734 125 8e-27 seq339205 113 5e-23 seq207838 109 6e-22 seq477654 98.7 1e-18 seq131643 95.1 1e-17 seq93049 86.0 7e-15 seq6808 80.6 3e-13 >seq364769 Length=2873 Score = 232 bits (256), Expect = 7e-59 Identities = 170/198 (86%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 ||||||| |||| |||||| | ||| |||| ||| ||| ||||||||||||| || || Sbjct 510 CGACCTTCTTGCCCGCCTTGAGGCGACGGCTGGCATTGCTGATCGCCAGCTCGGCGAGCT 569 Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120 | |||| | ||||| || |||||||||||||||||||||||||||||||||| || | Sbjct 570 GCTGGCCGAACTCCGGGTGGGCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACACCGG 629 Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCG 180 |||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 630 AGACGAAGGCCGAGGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGGCCGGAGAATTGCG 689 Query 181 GTTCCTGCATCTTCATCG 198 | |||||||||||||||| Sbjct 690 GCTCCTGCATCTTCATCG 707 >seq43493 Length=737 Score = 223 bits (246), Expect = 4e-56 Identities = 168/198 (85%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 ||||||| |||| |||||| | || |||| ||||||| ||||||||||||| || || Sbjct 78 CGACCTTCTTGCCCGCCTTGAGACGACGGCTGGCGTTGCTGATCGCCAGCTCGGCGAGCT 137 Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120 | |||| | |||||| || ||||||||||||||||||||||||||||||||||||| | Sbjct 138 GCTGGCCGAATTCCGGGTGGGCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCGG 197 Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCG 180 |||| || |||| |||||||| ||||||||||||||||||||||||||||| || || | Sbjct 198 AGACGAAGGCCGAAGCCTCGCGCGACGACAGGCGCTCCTTGGTCTGCCCGGAAAACTGAG 257 Query 181 GTTCCTGCATCTTCATCG 198 |||||||||||||||| Sbjct 258 CGTCCTGCATCTTCATCG 275 >seq341626 Length=1271 Score = 217 bits (240), Expect = 2e-54 Identities = 167/198 (84%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 ||||||| |||| ||||| | ||| |||| ||| ||| ||||||||||||| || || Sbjct 665 CGACCTTCTTGCCGGCCTTGAGGCGGCGGCTGGCATTGCTGATCGCCAGCTCGGCGAGCT 724 Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120 | |||| | ||||| || |||||||||||||||||||||||||||||||||| || | Sbjct 725 GCTGGCCGAACTCCGGGTGGGCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACACCGG 784 Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCG 180 |||| || |||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 785 AGACGAAGGCCGAGGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAACTGGG 844 Query 181 GTTCCTGCATCTTCATCG 198 |||||||||||||||| Sbjct 845 CGTCCTGCATCTTCATCG 862 >seq35964 Length=223 Score = 181 bits (200), Expect = 1e-43 Identities = 135/158 (85%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 41 GATCGCCAGCTCCGCCAGGGCCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAA 100 |||||||||||| || || | |||| | ||||| || ||||||||||||||||||| Sbjct 223 GATCGCCAGCTCGGCGAGCTGCTGGCCGAACTCCGGGTGGGCGTTGAGCCACAGGCTGAA 164 Query 101 GGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTT 160 |||||||||||||||||| ||||| || |||| |||||||| ||||||||||||||||| Sbjct 163 GGCGTCCTTGACCACGCCGGAGACGAAAGCCGAAGCCTCGCGCGACGACAGGCGCTCCTT 104 Query 161 GGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198 |||||||||||| || || | |||||||||||||||| Sbjct 103 GGTCTGCCCGGAAAACTGGGCGTCCTGCATCTTCATCG 66 >seq377734 Length=6277 Score = 125 bits (138), Expect = 8e-27 Identities = 150/200 (75%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 3 ACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCC 62 ||||||||| ||| || ||||| |||| || ||||||||| || ||||| | Sbjct 4300 ACCTTTTTGGCGGCCCGCATACGCCGCTGGGCGCTGGAGATCGCCAGTTCAGCCAG---C 4244 Query 63 AGGCC--CAGTTCCGGATGCTC--GTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCC 118 || | | || | ||||| || ||| ||||||||||| ||||| ||||| |||||||| Sbjct 4243 AGTTCTGCCGT-CTGGATGTTCTGGTTCAGCCACAGGCTAAAGGCATCCTTCACCACGCC 4185 Query 119 AGAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTG 178 || ||||| || || || || || ||||||||||| |||||||| |||| || || Sbjct 4184 CGACACAAAGGCGGCACACTGACGTGATGACAGGCGCTCTTTGGTCTGACCGGCAAACTG 4125 Query 179 CGGTTCCTGCATCTTCATCG 198 ||| ||||||||||||| || Sbjct 4124 CGGATCCTGCATCTTCACCG 4105 >seq339205 Length=499 Score = 113 bits (124), Expect = 5e-23 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 1 CGACCTTTTTGCTCGC-CTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGG 59 ||| || ||| |||| ||||| ||| || |||| | |||||| |||| || | Sbjct 219 CGATCTGTTT-CTCGGTCTTCAGACGCGCGCTGGCGCGATCGATCGCGAGCTGGGCGATC 277 Query 60 GCCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCA 119 | ||| || |||| |||| |||||||||||||||||| || || | | |||| Sbjct 278 TTCTCGCCGAGGTCCGTGTGCTGGTTGAGCCACAGGCTGAAAGCATCGTGCGCGGCGCCC 337 Query 120 GAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGC 179 ||| || |||| |||| ||| |||||||| |||||||||||||| |||||||| ||| Sbjct 338 TCGACGAAACCCGCGGCCTGGCGCGACGACAGCCGCTCCTTGGTCTGGCCGGAGAACTGC 397 Query 180 GGTTCCTGCATCTTCATCG 198 || || ||||||||||| Sbjct 398 GGATCGGTCATCTTCATCG 416 >seq207838 Length=369 Score = 109 bits (120), Expect = 6e-22 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 41 GATCGCCAGCTCCGCCAGGGCCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAA 100 ||||||||||| || | ||| || ||| ||||| |||||||||||||||||| Sbjct 198 GATCGCCAGCTGGGCGATCTGCAGTCCGGTCTCCACATGCTGGTTGAGCCACAGGCTGAA 257 Query 101 GGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTT 160 |||||| | | |||| || || | || |||| ||| || |||||||||||||| Sbjct 258 GGCGTCGTGCGCGGCGCCCTCGATGAAGCCGGCGGCCTGGCGCGAGGACAGGCGCTCCTT 317 Query 161 GGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198 ||||||||||||||| ||||| || |||||||| || Sbjct 318 GGTCTGCCCGGAGAACTGCGGGTCGGTCATCTTCAGCG 355 >seq477654 Length=271 Score = 98.7 bits (108), Expect = 1e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 ||||||| |||| |||||| | ||| |||| ||||||| |||||||||| || || || Sbjct 104 CGACCTTCTTGCCCGCCTTGAGGCGGCGGCTGGCGTTGCTGATCGCCAGTTCGGCGAGCT 45 Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCG 104 | |||| | |||||| || |||||||||| |||||||||||| Sbjct 44 GCTGGCCGAATTCCGGGTGAGCGTTGAGCCAAAGGCTGAAGGCG 1 >seq131643 Length=466 Score = 95.1 bits (104), Expect = 1e-17 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 97 TGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCT 156 ||||||| || || |||||||| ||||| |||||||| || |||||| || || |||| Sbjct 231 TGAAGGCATCTTTCACCACGCCGGAGACGAACGCCGCGCACTGGCGGGAGGAGAGACGCT 290 Query 157 CCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTT 193 | ||||||||||||| || ||||| |||||||| || Sbjct 291 CTTTGGTCTGCCCGGCAAACTGCGGATCCTGCATTTT 327 >seq93049 Length=1262 Score = 86.0 bits (94), Expect = 7e-15 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 84 TTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGG 143 || ||||||||||||||||| || ||||||||| | || || || || || || ||| Sbjct 811 TTCAGCCACAGGCTGAAGGCATCTTTGACCACGGCTGACACGAAGGCGGCGCACTGGCGT 752 Query 144 GACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198 || || | |||||| ||||| || |||| || || || |||||||| |||| || Sbjct 751 GAAGATAAGCGCTCTTTGGTTTGACCGGCAAACTGTGGATCCTGCATTTTCACCG 697 >seq6808 Length=231 Score = 80.6 bits (88), Expect = 3e-13 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 65 GCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGAC 124 |||||| ||| | || ||| ||| |||||||||||| || | | | |||| ||| Sbjct 37 GCCCAGCTCCACGTTCTGGTTCAGCAGCAGGCTGAAGGCATCGTGGGCGGCGCCTTCGAC 96 Query 125 AAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTC 184 || | || |||| ||| || |||||||| ||||||||||| ||| ||| ||||| || Sbjct 97 GAAACCGGCGGCCTGGCGCGAGGACAGGCGTTCCTTGGTCTGGCCGCTGAACTGCGGATC 156 Query 185 CTGCATCTTCATCG 198 |||||||| || Sbjct 157 GGTCATCTTCAGCG 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531678829021