Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001464.1 Length=239 Score E Sequences producing significant alignments: (Bits) Value seq253394 141 1e-31 seq112664 138 1e-30 >seq253394 Length=839 Score = 141 bits (156), Expect = 1e-31 Identities = 143/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 21 CTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGAAGTT 80 |||| |||||||| | |||||||||||||| || ||||| | |||| ||||||||| Sbjct 785 CTTGCCTTGCAGCAGATCGTTGGCCAGGTTGCGCACGTCACCCAGGTTGTTGAAGAAGTT 726 Query 81 GTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATTGGCTT 140 | |||||| |||||| || || |||| ||||||||| ||||||| ||||| Sbjct 725 GCTCACGCCGGTCTGCACGAAGCCGGGCGTGAAACGCTGATAGCCTTGGGCGACCGGCTT 666 Query 141 GAGGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTTTCCCA 200 ||||||||||||||| | ||| |||||||| |||||| |||||||| || |||||| Sbjct 665 GAGGGCATAGGTGTCCAGGGTATCGTTGAACACGAAGATCTTGCGGTTGAAGCCTTCCCA 606 Query 201 CGGGTC 206 || || Sbjct 605 GGGATC 600 >seq112664 Length=4250 Score = 138 bits (152), Expect = 1e-30 Identities = 166/225 (74%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 1 TCGACGCCTGCATTGAGCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCA 60 || ||||| || | | ||| |||| || || | ||||||||||||||||||||||| Sbjct 3268 TCCACGCCGGCGTCGTGCGCCTTGCCCTGGAGGAGATTGTTGGCCAGGTTGCCGACATCG 3327 Query 61 CCGATGTTGCGGAAGAAGTTGTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGA 120 |||| ||||||||| | ||||| || ||| | || || || || || || | | Sbjct 3328 CCGACGTTGCGGAATACATTGTGCACACCGGTTTCCAGGAACTGCGGTGTCACCGCCCGG 3387 Query 121 TAGCCCTGGGCGATTGGCTTGAGGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATG 180 || |||||||| | |||||||||||| ||||| || ||||| ||||||||| |||| | Sbjct 3388 TACCCCTGGGCCAGTGGCTTGAGGGCGTAGGTATCGACGGTATCGTTGAAGCGAAAGACG 3447 Query 181 GGGCGGTTGACGCTTTCCCACGGGTCATCTTCCGAGGCCGCTTGG 225 || ||||||| ||||| ||| ||||||| ||||| ||| Sbjct 3448 GGACGGTTGAACGACTCCCAGGGG---TCTTCCGTTGCCGCCTGG 3489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 662210757104