Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001503.1 Length=170 Score E Sequences producing significant alignments: (Bits) Value seq330598 113 4e-23 seq141256 91.5 1e-16 seq65592 89.7 5e-16 >seq330598 Length=6496 Score = 113 bits (124), Expect = 4e-23 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 8 TTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCTGTGGCTG 67 ||||||||| ||||||||| ||||| ||||| ||||||||||| ||||| | |||||| Sbjct 3415 TTCTACAAAGCCGCCATGGGTGCCGGGATCAAACCGATCTGCGGGGCCGATATCTGGCTG 3356 Query 68 TCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCGATGAACGGTGTT 127 ||| | | ||| | | |||| |||||| |||||||||||||||| Sbjct 3355 GCCAGCGCCTATGAAGACGGCCCGCTGACCCGCATGACCCTGCTGGCGATGAACCCCAGG 3296 Query 128 GGTTACCGCAACCTCACCGAGCTGATTTCCCGTGGTT 164 || ||||||||||||||||||||| | || || |||| Sbjct 3295 GGCTACCGCAACCTCACCGAGCTGGTGTCGCGCGGTT 3259 >seq141256 Length=472 Score = 91.5 bits (100), Expect = 1e-16 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 25 GGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCTGTGGCTGTCCAA---CAAAGACCC 81 ||||||||| |||||||| ||| |||||||||| | |||||| || | ||| | Sbjct 472 GGGCGCCGGGATCAAGCCCATCGCCGGCGCCGACATCTGGCTGGCCGGTCGCGAAGGC-- 415 Query 82 GGACAACGCCCTGAGCCGCATCGGCCTGCTGGCGATGAACGGTGTTGGTTACCGCAACCT 141 ||| ||||||||||||| |||||||| ||||||| || || |||||||| Sbjct 414 -GACGCGCCCCTGAGCCGCATGACCCTGCTGGTCATGAACGCCAAGGGCTATCGCAACCT 356 Query 142 CACCGAGCTGATTTCCCGTGGTTTC 166 |||||| ||| | |||||||| ||| Sbjct 355 CACCGAACTGCTGTCCCGTGGATTC 331 >seq65592 Length=943 Score = 89.7 bits (98), Expect = 5e-16 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 8 TTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCTGTGGCTG 67 ||||||||| |||||||||||||| ||||| ||||||||||| |||||| | |||||| Sbjct 903 TTCTACAAAGCGGCCATGGGCGCCGGCATCAAACCGATCTGCGGTGCCGACATCTGGCTG 844 Query 68 TCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCGATGAACGGTGTT 127 ||| | || || | | |||| || || |||||| ||||||||| Sbjct 843 GCCAGCGCTTACGAAGATGGCCCGCTGACTCGTATGACCCTGCTCGCGATGAACCCCAAA 784 Query 128 GGTTACCGCAACCTCACCGAGCTGATTTCCCGTGGTT 164 || || |||||||| || || ||||| || || |||| Sbjct 783 GGCTATCGCAACCTGACGGAACTGATCTCGCGCGGTT 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442535073257