Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001545.1 Length=359 Score E Sequences producing significant alignments: (Bits) Value seq429550 232 1e-58 seq106584 192 1e-46 seq175789 183 6e-44 seq392922 156 9e-36 >seq429550 Length=1993 Score = 232 bits (256), Expect = 1e-58 Identities = 251/333 (75%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 27 GGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATACATGTAGCACACGTAACCGCTGCAA 86 ||||||||||||||||| || || || ||||||||||||||||| |||| |||||||| Sbjct 1993 GGCAGGATGTTCACGTTAGGTGACGCTTTGGAATACATGTAGCAGGCGTAGCCGCTGCAG 1934 Query 87 AAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCATAGGGGTTGGTGTACGGCCCCGAG 146 | ||||||||||| ||||| ||||||||||||||||||| |||||| || ||||| ||| Sbjct 1933 TATCCGCAGAAGTTACACGGCCCCATCTGCGCGCCATAGGTGTTGGTATAGGGCCCGGAG 1874 Query 147 GTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCGACCTCGGCAGCGGCTTTCTGAAAC 206 || ||||| || ||||| | ||| || | || |||||| | || || | | |||| Sbjct 1873 GTGTTGGCGGAAGGCAGATCGTAAGGATGATAGCCGACCGACTCCGCCGCCTGCGCAAAC 1814 Query 207 AGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAGGGGAACGGGTTGGAGCGGTCCGGG 266 ||||| || ||| ||| ||||| | || ||||| | ||||| || || Sbjct 1813 AGCTGCGCCGAGTAGGTACGCTTCTGTGCGGGCAGCGGGAAGTTATCTGAGCGATCGGGC 1754 Query 267 GCATACGGGTTGCCACCGCGACCTTCGCCCACCAACTGGCCTTTGACGGTCCAGGCCTGG 326 ||| ||||||| || || | ||| ||| |||| || ||| |||| ||||||| | Sbjct 1753 GCAAACGGGTTACCGCCTTTATCTTTGCCGACCACCTTGCCCTTGATACTCCAGGCGCTG 1694 Query 327 CCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 359 || |||||||| |||||||||||||| | |||| Sbjct 1693 CCTGAGGTGCCAAAGACTTTTTCCGCCTTGTCG 1661 >seq106584 Length=1456 Score = 192 bits (212), Expect = 1e-46 Identities = 174/218 (80%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62 || || ||| |||| |||||||| |||||||| ||||| || || || |||||||||||| Sbjct 535 AACTTTGGCTCCTGACGCAGCGCAGGCAGGATATTCACATTGGGTGAGGCCTTGGAATAC 476 Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122 || ||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||| Sbjct 475 ATATAGCAGGCGTAACCGCTGCAGTAGCCGCAGAAGTTGCACGGTCCCATCTGCGCGCCA 416 Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182 |||| |||||| || || || |||||||| ||||| ||||| | ||| || | || || Sbjct 415 TAGGTGTTGGTATAAGGACCTGAGGTATTCGCCGAGGGCAGATCGTAAGGATGATAGCCT 356 Query 183 AC---CTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGA 217 || |||||| ||| | |||||||||||| || Sbjct 355 ACTGACTCGGC---GGCCTGGGCAAACAGCTGTGCTGA 321 >seq175789 Length=2295 Score = 183 bits (202), Expect = 6e-44 Identities = 253/353 (72%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62 || || ||| ||||||||||||| |||| || ||||| |||||||| |||||||||||| Sbjct 34 AACTTTGGCTCCTGGCGCAGCGCAGGCAAAATATTCACATTCGGCGATGCCTTGGAATAC 93 Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122 || || || |||| |||||||| | ||||||||||||||||| |||||||| ||||| Sbjct 94 ATATAACAGGCGTAGCCGCTGCAGTAGCCGCAGAAGTTGCACGGCCCCATCTGGGCGCCG 153 Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182 || | ||||| || || || ||||| || ||||||||||| | ||| || | ||||| Sbjct 154 TAAGTATTGGTATAGGGGCCAGAGGTGTTCGCCGACGGCAGATCGTAAGGGTGATAACCT 213 Query 183 AC---CTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCC 239 || |||| ||||| | ||||||||| || || ||| || |||| | Sbjct 214 ACGGACTCG---GCGGCCTGGGCAAACAGCTGAGCCGACCAGGTACGCTTTTGCGCGGGC 270 Query 240 AAGGGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACC 299 | || || || ||||| || || ||| | ||||| || || ||| ||| || Sbjct 271 AGTGGAAAGTTGTCAGAGCGATCGGGCGCAAAGGGGTTACCGCCTTTGTCTTTGCCGACG 330 Query 300 AACTGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGC 352 | || ||| | | ||||||| ||||||||||| || || ||||| || Sbjct 331 ACCTTGCCCTGAATACTCCAGGCACTACCGGAGGTGCCAAACACCTTTTCAGC 383 >seq392922 Length=1429 Score = 156 bits (172), Expect = 9e-36 Identities = 122/146 (84%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1 CGAAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAAT 60 ||||| |||| |||| ||||||||||||||||| | |||||||| |||||||||| Sbjct 146 CGAAGCGCGGCTCCTGCTTGAGCGCCGGCAGGATGTTGAGATTCGGCGAGGCCTTGGAAT 87 Query 61 ACATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGC 120 |||||||||| ||||| ||||||||| | |||||||||||||| || |||||||| | Sbjct 86 ACATGTAGCAGACGTAGCCGCTGCAATAGCCGCAGAAGTTGCAGGGCCCCATCTGGCAAC 27 Query 121 CATAGGGGTTGGTGTACGGCCCCGAG 146 | |||||||||||||| || |||||| Sbjct 26 CGTAGGGGTTGGTGTAGGGACCCGAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1040899839072