Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001545.1
Length=359
Score E
Sequences producing significant alignments: (Bits) Value
seq429550 232 1e-58
seq106584 192 1e-46
seq175789 183 6e-44
seq392922 156 9e-36
>seq429550
Length=1993
Score = 232 bits (256), Expect = 1e-58
Identities = 251/333 (75%), Gaps = 0/333 (0%)
Strand=Plus/Minus
Query 27 GGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATACATGTAGCACACGTAACCGCTGCAA 86
||||||||||||||||| || || || ||||||||||||||||| |||| ||||||||
Sbjct 1993 GGCAGGATGTTCACGTTAGGTGACGCTTTGGAATACATGTAGCAGGCGTAGCCGCTGCAG 1934
Query 87 AAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCATAGGGGTTGGTGTACGGCCCCGAG 146
| ||||||||||| ||||| ||||||||||||||||||| |||||| || ||||| |||
Sbjct 1933 TATCCGCAGAAGTTACACGGCCCCATCTGCGCGCCATAGGTGTTGGTATAGGGCCCGGAG 1874
Query 147 GTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCGACCTCGGCAGCGGCTTTCTGAAAC 206
|| ||||| || ||||| | ||| || | || |||||| | || || | | ||||
Sbjct 1873 GTGTTGGCGGAAGGCAGATCGTAAGGATGATAGCCGACCGACTCCGCCGCCTGCGCAAAC 1814
Query 207 AGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAGGGGAACGGGTTGGAGCGGTCCGGG 266
||||| || ||| ||| ||||| | || ||||| | ||||| || ||
Sbjct 1813 AGCTGCGCCGAGTAGGTACGCTTCTGTGCGGGCAGCGGGAAGTTATCTGAGCGATCGGGC 1754
Query 267 GCATACGGGTTGCCACCGCGACCTTCGCCCACCAACTGGCCTTTGACGGTCCAGGCCTGG 326
||| ||||||| || || | ||| ||| |||| || ||| |||| ||||||| |
Sbjct 1753 GCAAACGGGTTACCGCCTTTATCTTTGCCGACCACCTTGCCCTTGATACTCCAGGCGCTG 1694
Query 327 CCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 359
|| |||||||| |||||||||||||| | ||||
Sbjct 1693 CCTGAGGTGCCAAAGACTTTTTCCGCCTTGTCG 1661
>seq106584
Length=1456
Score = 192 bits (212), Expect = 1e-46
Identities = 174/218 (80%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62
|| || ||| |||| |||||||| |||||||| ||||| || || || ||||||||||||
Sbjct 535 AACTTTGGCTCCTGACGCAGCGCAGGCAGGATATTCACATTGGGTGAGGCCTTGGAATAC 476
Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122
|| ||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 475 ATATAGCAGGCGTAACCGCTGCAGTAGCCGCAGAAGTTGCACGGTCCCATCTGCGCGCCA 416
Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182
|||| |||||| || || || |||||||| ||||| ||||| | ||| || | || ||
Sbjct 415 TAGGTGTTGGTATAAGGACCTGAGGTATTCGCCGAGGGCAGATCGTAAGGATGATAGCCT 356
Query 183 AC---CTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGA 217
|| |||||| ||| | |||||||||||| ||
Sbjct 355 ACTGACTCGGC---GGCCTGGGCAAACAGCTGTGCTGA 321
>seq175789
Length=2295
Score = 183 bits (202), Expect = 6e-44
Identities = 253/353 (72%), Gaps = 6/353 (2%)
Strand=Plus/Plus
Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62
|| || ||| ||||||||||||| |||| || ||||| |||||||| ||||||||||||
Sbjct 34 AACTTTGGCTCCTGGCGCAGCGCAGGCAAAATATTCACATTCGGCGATGCCTTGGAATAC 93
Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122
|| || || |||| |||||||| | ||||||||||||||||| |||||||| |||||
Sbjct 94 ATATAACAGGCGTAGCCGCTGCAGTAGCCGCAGAAGTTGCACGGCCCCATCTGGGCGCCG 153
Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182
|| | ||||| || || || ||||| || ||||||||||| | ||| || | |||||
Sbjct 154 TAAGTATTGGTATAGGGGCCAGAGGTGTTCGCCGACGGCAGATCGTAAGGGTGATAACCT 213
Query 183 AC---CTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCC 239
|| |||| ||||| | ||||||||| || || ||| || |||| |
Sbjct 214 ACGGACTCG---GCGGCCTGGGCAAACAGCTGAGCCGACCAGGTACGCTTTTGCGCGGGC 270
Query 240 AAGGGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACC 299
| || || || ||||| || || ||| | ||||| || || ||| ||| ||
Sbjct 271 AGTGGAAAGTTGTCAGAGCGATCGGGCGCAAAGGGGTTACCGCCTTTGTCTTTGCCGACG 330
Query 300 AACTGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGC 352
| || ||| | | ||||||| ||||||||||| || || ||||| ||
Sbjct 331 ACCTTGCCCTGAATACTCCAGGCACTACCGGAGGTGCCAAACACCTTTTCAGC 383
>seq392922
Length=1429
Score = 156 bits (172), Expect = 9e-36
Identities = 122/146 (84%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 1 CGAAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAAT 60
||||| |||| |||| ||||||||||||||||| | |||||||| ||||||||||
Sbjct 146 CGAAGCGCGGCTCCTGCTTGAGCGCCGGCAGGATGTTGAGATTCGGCGAGGCCTTGGAAT 87
Query 61 ACATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGC 120
|||||||||| ||||| ||||||||| | |||||||||||||| || |||||||| |
Sbjct 86 ACATGTAGCAGACGTAGCCGCTGCAATAGCCGCAGAAGTTGCAGGGCCCCATCTGGCAAC 27
Query 121 CATAGGGGTTGGTGTACGGCCCCGAG 146
| |||||||||||||| || ||||||
Sbjct 26 CGTAGGGGTTGGTGTAGGGACCCGAG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1040899839072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |