Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001569.1
Length=509
Score E
Sequences producing significant alignments: (Bits) Value
seq379411 329 1e-87
seq268228 277 5e-72
seq410408 214 5e-53
seq162326 141 3e-31
>seq379411
Length=5935
Score = 329 bits (364), Expect = 1e-87
Identities = 323/409 (79%), Gaps = 11/409 (3%)
Strand=Plus/Plus
Query 1 CGACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACC-GCAC 59
||| || ||||| || ||| |||||| | |||||||||||||||||||||||| || |
Sbjct 1653 CGATGGGCGTCCCTCTCCGGTGCTGGGCACCCGTGGCGGCCTGTACCCGGAGACCAGCGC 1712
Query 60 TGATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTG 119
|| || | |||||||| || ||||||||| |||| |||||||| || || || |
Sbjct 1713 C-ATCAGCGTATCGGGCCAGGACGTACTGCCCAAGCTGCAAGCCCAGGCCGAGGCGGCCG 1771
Query 120 TGCGTTTGTTGGGCTTTACGCCGAC---CAACTCG--CCAGGCGTACCACAACTGACCGT 174
|||| || ||||||| || ||| | ||| | | | ||| ||||| |||||| |
Sbjct 1772 TGCGCCTGCTGGGCTTCACCCCGTCGGCCAATGCCTACAACGCG--CCACAGCTGACCCT 1829
Query 175 GACCCTGGCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTC 234
||||||||||||||| || ||||||||||||||||| || ||||| || ||||| ||
Sbjct 1830 GACCCTGGCCGAGCTCAAGTACCAGTCGCCCAAAGAGGGTCTGTACGTCACCGAAGCCAA 1889
Query 235 CATCGGCGCCACCTTCAAGTCTGACGT-CAGTGCCGGCACCCGCCGTTACAGTGGCCGCT 293
||| ||||| |||| ||||||| ||| | ||| ||||||||||| |||||||
Sbjct 1890 CATGACCGCCAGCTTCCGCGCTGACGTGCAG-AACAGCAATCGCCGTTACAGCGGCCGCT 1948
Query 294 ACGCCGCCTCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGC 353
||| |||||||| |||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 1949 ACGGTGCCTCGCTGAACCAGCGTTTCGGCATGGCGCCGAACCAGGAAACCAATACCAAGC 2008
Query 354 TGGTCAGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCC 402
|||||||||||||| | |||||||| ||||||||| |||||||||||
Sbjct 2009 TGGTCAGCGACGTGTTGAGCGATGCACTGACCCGCGCCTTCAAGGACCC 2057
Score = 178 bits (196), Expect = 4e-42
Identities = 130/151 (86%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 275 CGCCGTTACAGTGGCCGCTACGCCGCCTCGCTCAACCAGCGTTTCGGCATGTCGCCCAAC 334
||||||||||| |||||||||| |||||||| |||||||||||||||||| |||| |||
Sbjct 2096 CGCCGTTACAGCGGCCGCTACGGTGCCTCGCTGAACCAGCGTTTCGGCATGGCGCCGAAC 2155
Query 335 CAGGAAACCAACACCAAGCTGGTCAGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTC 394
||||||||||| ||||||||||||||||||||| | |||||||| ||||||||| |||
Sbjct 2156 CAGGAAACCAATACCAAGCTGGTCAGCGACGTGTTGAGCGATGCACTGACCCGCGCCTTC 2215
Query 395 AAGGACCCAAGCATCGGCCAACTGCTCAGCG 425
|||||||| | | | || || | |||||||
Sbjct 2216 AAGGACCCGACCCTGGGACAGATCCTCAGCG 2246
>seq268228
Length=1951
Score = 277 bits (306), Expect = 5e-72
Identities = 330/440 (75%), Gaps = 11/440 (3%)
Strand=Plus/Minus
Query 1 CGACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACC-GCAC 59
||| || ||||| || ||| |||||| | || || ||||||||||| || ||| || |
Sbjct 1894 CGATGGACGTCCTTCTCCGGTACTGGGCACCCGCGGTGGCCTGTACCCTGAAACCAGCGC 1835
Query 60 TGATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTG 119
||| || ||||||| || | ||||||||| ||||||| ||||| ||||| ||||
Sbjct 1834 -GATCAGCGTTTCCGGCCAAGACATTCTGCCCAAGCTGCAGGCTCAGGCCGAAGCGGCTG 1776
Query 120 TGCGTTTGTTGGGCTTTACGCCGAC-CAACTCGCC----AGGCGTACCACAACTGACCGT 174
|||| |||||||||| ||||| | | | |||| | ||| || || ||||| |
Sbjct 1775 TGCGCCTGTTGGGCTTCACGCCCTCGCCAAACGCCTATAACGCG--CCGCAGTTGACCCT 1718
Query 175 GACCCTGGCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTC 234
||||||||||||||| ||||| ||||| ||||| || ||| |||| || ||||| ||
Sbjct 1717 GACCCTGGCCGAGCTGAAATATCAGTCACCCAAGGAAGGCATGTACGTCACCGAAGCCGA 1658
Query 235 CATCGGCGCCACCTTCAAGTCTGACGT-CAGTGCCGGCACCCGCCGTTACAGTGGCCGCT 293
||| |||| |||| | || || ||| | | || || |||||||| |||||||
Sbjct 1657 CATGACTGCCAGCTTCGGAGCCGATGTGCAGAACAG-CAATCGTCGTTACAGCGGCCGCT 1599
Query 294 ACGCCGCCTCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGC 353
||| ||| ||| | |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1598 ACGGCGCTTCGTTGAACCAGCGTTTCGGCATGGCGCCGAACCAGGAAACCAACACCAAGC 1539
Query 354 TGGTCAGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCC 413
||||||| || ||||| ||||| || || ||||| ||||||||||| | | | || |
Sbjct 1538 TGGTCAGTGATGTGCTGAGCGACGCGCTCACCCGTGCATTCAAGGACCCGACCCTGGGGC 1479
Query 414 AACTGCTCAGCGCGCAATAA 433
| | |||| || || |||
Sbjct 1478 AGATCCTCAACGGTCAGTAA 1459
>seq410408
Length=424
Score = 214 bits (236), Expect = 5e-53
Identities = 262/356 (74%), Gaps = 9/356 (3%)
Strand=Plus/Plus
Query 76 CCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTGCGTTTGTTGGGCTT 135
|||||| ||| | || ||| |||||||| | || || || || || | |||||||
Sbjct 39 CCAGGACGTGATTCCTAAGCTGCAGGCCGAAGCCGAGAAGGCGGTCCGCCAGATGGGCTT 98
Query 136 TACGCCGAC---CAACTCG---CCAGGCGTACCACAACTGACCGTGACCCTGGCCGAGCT 189
|| ||| | ||| | || |||| || || |||||| ||||||||||||||||
Sbjct 99 CACCCCGTCGCCCAATGCCGGCCCTGGCGCGCCCCAGCTGACCCTGACCCTGGCCGAGCT 158
Query 190 TAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTCCATCGGCGCCACCTT 249
|| |||||||||||||| || ||||| || |||| | | ||| ||| ||||
Sbjct 159 GAACTACCAGTCGCCCAAGGAG---CTGTACGTCACCGCCTCCGACGTCGCCGCGGCCTT 215
Query 250 CAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCCTCGCTCAA 309
| || ||||| | | || ||| | ||| | |||||||||| |||| |||||
Sbjct 216 CCAGGTCGACGTGCGCAACAGCCAGCGCGGCTACCGCGGCCGCTACGGCGCCAGCCTCAA 275
Query 310 CCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTCAGCGACGTGCT 369
|||||||||||||||| |||||||| || |||||||||||||||||||||| |||||
Sbjct 276 CCAGCGTTTCGGCATGGCGCCCAACGCCGAGGCCAACACCAAGCTGGTCAGCGATGTGCT 335
Query 370 CAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTGCTCAGCG 425
||||||||||||||||| |||||||||| || | | | | ||| |||||||||
Sbjct 336 GAGCGATGCCCTGACCCGGGTGTTCAAGGATCCGACCGTGGTCCAGGTGCTCAGCG 391
>seq162326
Length=281
Score = 141 bits (156), Expect = 3e-31
Identities = 203/280 (73%), Gaps = 7/280 (3%)
Strand=Plus/Minus
Query 32 CGTGGCGGCCTGTACCCGGAGACC-GCACTGATTTCGGTGACCGGCCAGGATGTGCTGCC 90
|| ||||| ||||| ||||||||| || | || || | |||||||| ||||||||
Sbjct 278 CGCGGCGGTCTGTATCCGGAGACCAGCGCC-ATCAGCGTATCGGGCCAGGACGTGCTGCC 220
Query 91 CAAGTTGCAGGCCCAGGCTGAAGCTGCTGTGCGTTTGTTGGGCTTTACGCCGAC---CAA 147
|||| ||||||| ||||| || || || || || || ||||||| || ||| | |||
Sbjct 219 CAAGCTGCAGGCTCAGGCCGAGGCAGCCGTACGCCTGCTGGGCTTCACCCCGTCGGCCAA 160
Query 148 CTCGCCAGGCGTACCACAACTGACCGTGACCCTGGCCGAGCTTAAATACCAGTCGCCCAA 207
| || || ||| ||||| |||| ||||||||||| || || |||||||||||
Sbjct 159 TGCCTATAACGCCCCGCAATTGACCCTGACTCTGGCCGAGCTGAAGTATCAGTCGCCCAA 100
Query 208 AGACGGCCTGTATGTGACCGAGGCTTCCATCGGCGCCACCTTCAAGTCTGACGT-CAGTG 266
|| |||||||| |||||||| || ||| ||||| |||| | ||||| |||
Sbjct 99 GGAAGGCCTGTACGTGACCGAAGCCGACATGACCGCCAGCTTCCGTGCCGACGTGCAG-A 41
Query 267 CCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCCTCGCT 306
| ||| ||| |||||||| ||||| || | || |||||
Sbjct 40 ACAGCAACCGTCGTTACAGCGGCCGTTATGGTGCTTCGCT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1518376829472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |