Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001569.1 Length=509 Score E Sequences producing significant alignments: (Bits) Value seq379411 329 1e-87 seq268228 277 5e-72 seq410408 214 5e-53 seq162326 141 3e-31 >seq379411 Length=5935 Score = 329 bits (364), Expect = 1e-87 Identities = 323/409 (79%), Gaps = 11/409 (3%) Strand=Plus/Plus Query 1 CGACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACC-GCAC 59 ||| || ||||| || ||| |||||| | |||||||||||||||||||||||| || | Sbjct 1653 CGATGGGCGTCCCTCTCCGGTGCTGGGCACCCGTGGCGGCCTGTACCCGGAGACCAGCGC 1712 Query 60 TGATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTG 119 || || | |||||||| || ||||||||| |||| |||||||| || || || | Sbjct 1713 C-ATCAGCGTATCGGGCCAGGACGTACTGCCCAAGCTGCAAGCCCAGGCCGAGGCGGCCG 1771 Query 120 TGCGTTTGTTGGGCTTTACGCCGAC---CAACTCG--CCAGGCGTACCACAACTGACCGT 174 |||| || ||||||| || ||| | ||| | | | ||| ||||| |||||| | Sbjct 1772 TGCGCCTGCTGGGCTTCACCCCGTCGGCCAATGCCTACAACGCG--CCACAGCTGACCCT 1829 Query 175 GACCCTGGCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTC 234 ||||||||||||||| || ||||||||||||||||| || ||||| || ||||| || Sbjct 1830 GACCCTGGCCGAGCTCAAGTACCAGTCGCCCAAAGAGGGTCTGTACGTCACCGAAGCCAA 1889 Query 235 CATCGGCGCCACCTTCAAGTCTGACGT-CAGTGCCGGCACCCGCCGTTACAGTGGCCGCT 293 ||| ||||| |||| ||||||| ||| | ||| ||||||||||| ||||||| Sbjct 1890 CATGACCGCCAGCTTCCGCGCTGACGTGCAG-AACAGCAATCGCCGTTACAGCGGCCGCT 1948 Query 294 ACGCCGCCTCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGC 353 ||| |||||||| |||||||||||||||||| |||| |||||||||||||| ||||||| Sbjct 1949 ACGGTGCCTCGCTGAACCAGCGTTTCGGCATGGCGCCGAACCAGGAAACCAATACCAAGC 2008 Query 354 TGGTCAGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCC 402 |||||||||||||| | |||||||| ||||||||| ||||||||||| Sbjct 2009 TGGTCAGCGACGTGTTGAGCGATGCACTGACCCGCGCCTTCAAGGACCC 2057 Score = 178 bits (196), Expect = 4e-42 Identities = 130/151 (86%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 275 CGCCGTTACAGTGGCCGCTACGCCGCCTCGCTCAACCAGCGTTTCGGCATGTCGCCCAAC 334 ||||||||||| |||||||||| |||||||| |||||||||||||||||| |||| ||| Sbjct 2096 CGCCGTTACAGCGGCCGCTACGGTGCCTCGCTGAACCAGCGTTTCGGCATGGCGCCGAAC 2155 Query 335 CAGGAAACCAACACCAAGCTGGTCAGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTC 394 ||||||||||| ||||||||||||||||||||| | |||||||| ||||||||| ||| Sbjct 2156 CAGGAAACCAATACCAAGCTGGTCAGCGACGTGTTGAGCGATGCACTGACCCGCGCCTTC 2215 Query 395 AAGGACCCAAGCATCGGCCAACTGCTCAGCG 425 |||||||| | | | || || | ||||||| Sbjct 2216 AAGGACCCGACCCTGGGACAGATCCTCAGCG 2246 >seq268228 Length=1951 Score = 277 bits (306), Expect = 5e-72 Identities = 330/440 (75%), Gaps = 11/440 (3%) Strand=Plus/Minus Query 1 CGACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACC-GCAC 59 ||| || ||||| || ||| |||||| | || || ||||||||||| || ||| || | Sbjct 1894 CGATGGACGTCCTTCTCCGGTACTGGGCACCCGCGGTGGCCTGTACCCTGAAACCAGCGC 1835 Query 60 TGATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTG 119 ||| || ||||||| || | ||||||||| ||||||| ||||| ||||| |||| Sbjct 1834 -GATCAGCGTTTCCGGCCAAGACATTCTGCCCAAGCTGCAGGCTCAGGCCGAAGCGGCTG 1776 Query 120 TGCGTTTGTTGGGCTTTACGCCGAC-CAACTCGCC----AGGCGTACCACAACTGACCGT 174 |||| |||||||||| ||||| | | | |||| | ||| || || ||||| | Sbjct 1775 TGCGCCTGTTGGGCTTCACGCCCTCGCCAAACGCCTATAACGCG--CCGCAGTTGACCCT 1718 Query 175 GACCCTGGCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTC 234 ||||||||||||||| ||||| ||||| ||||| || ||| |||| || ||||| || Sbjct 1717 GACCCTGGCCGAGCTGAAATATCAGTCACCCAAGGAAGGCATGTACGTCACCGAAGCCGA 1658 Query 235 CATCGGCGCCACCTTCAAGTCTGACGT-CAGTGCCGGCACCCGCCGTTACAGTGGCCGCT 293 ||| |||| |||| | || || ||| | | || || |||||||| ||||||| Sbjct 1657 CATGACTGCCAGCTTCGGAGCCGATGTGCAGAACAG-CAATCGTCGTTACAGCGGCCGCT 1599 Query 294 ACGCCGCCTCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGC 353 ||| ||| ||| | |||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 1598 ACGGCGCTTCGTTGAACCAGCGTTTCGGCATGGCGCCGAACCAGGAAACCAACACCAAGC 1539 Query 354 TGGTCAGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCC 413 ||||||| || ||||| ||||| || || ||||| ||||||||||| | | | || | Sbjct 1538 TGGTCAGTGATGTGCTGAGCGACGCGCTCACCCGTGCATTCAAGGACCCGACCCTGGGGC 1479 Query 414 AACTGCTCAGCGCGCAATAA 433 | | |||| || || ||| Sbjct 1478 AGATCCTCAACGGTCAGTAA 1459 >seq410408 Length=424 Score = 214 bits (236), Expect = 5e-53 Identities = 262/356 (74%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 76 CCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTGCGTTTGTTGGGCTT 135 |||||| ||| | || ||| |||||||| | || || || || || | ||||||| Sbjct 39 CCAGGACGTGATTCCTAAGCTGCAGGCCGAAGCCGAGAAGGCGGTCCGCCAGATGGGCTT 98 Query 136 TACGCCGAC---CAACTCG---CCAGGCGTACCACAACTGACCGTGACCCTGGCCGAGCT 189 || ||| | ||| | || |||| || || |||||| |||||||||||||||| Sbjct 99 CACCCCGTCGCCCAATGCCGGCCCTGGCGCGCCCCAGCTGACCCTGACCCTGGCCGAGCT 158 Query 190 TAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTCCATCGGCGCCACCTT 249 || |||||||||||||| || ||||| || |||| | | ||| ||| |||| Sbjct 159 GAACTACCAGTCGCCCAAGGAG---CTGTACGTCACCGCCTCCGACGTCGCCGCGGCCTT 215 Query 250 CAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCCTCGCTCAA 309 | || ||||| | | || ||| | ||| | |||||||||| |||| ||||| Sbjct 216 CCAGGTCGACGTGCGCAACAGCCAGCGCGGCTACCGCGGCCGCTACGGCGCCAGCCTCAA 275 Query 310 CCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTCAGCGACGTGCT 369 |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||| Sbjct 276 CCAGCGTTTCGGCATGGCGCCCAACGCCGAGGCCAACACCAAGCTGGTCAGCGATGTGCT 335 Query 370 CAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTGCTCAGCG 425 ||||||||||||||||| |||||||||| || | | | | ||| ||||||||| Sbjct 336 GAGCGATGCCCTGACCCGGGTGTTCAAGGATCCGACCGTGGTCCAGGTGCTCAGCG 391 >seq162326 Length=281 Score = 141 bits (156), Expect = 3e-31 Identities = 203/280 (73%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 32 CGTGGCGGCCTGTACCCGGAGACC-GCACTGATTTCGGTGACCGGCCAGGATGTGCTGCC 90 || ||||| ||||| ||||||||| || | || || | |||||||| |||||||| Sbjct 278 CGCGGCGGTCTGTATCCGGAGACCAGCGCC-ATCAGCGTATCGGGCCAGGACGTGCTGCC 220 Query 91 CAAGTTGCAGGCCCAGGCTGAAGCTGCTGTGCGTTTGTTGGGCTTTACGCCGAC---CAA 147 |||| ||||||| ||||| || || || || || || ||||||| || ||| | ||| Sbjct 219 CAAGCTGCAGGCTCAGGCCGAGGCAGCCGTACGCCTGCTGGGCTTCACCCCGTCGGCCAA 160 Query 148 CTCGCCAGGCGTACCACAACTGACCGTGACCCTGGCCGAGCTTAAATACCAGTCGCCCAA 207 | || || ||| ||||| |||| ||||||||||| || || ||||||||||| Sbjct 159 TGCCTATAACGCCCCGCAATTGACCCTGACTCTGGCCGAGCTGAAGTATCAGTCGCCCAA 100 Query 208 AGACGGCCTGTATGTGACCGAGGCTTCCATCGGCGCCACCTTCAAGTCTGACGT-CAGTG 266 || |||||||| |||||||| || ||| ||||| |||| | ||||| ||| Sbjct 99 GGAAGGCCTGTACGTGACCGAAGCCGACATGACCGCCAGCTTCCGTGCCGACGTGCAG-A 41 Query 267 CCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCCTCGCT 306 | ||| ||| |||||||| ||||| || | || ||||| Sbjct 40 ACAGCAACCGTCGTTACAGCGGCCGTTATGGTGCTTCGCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1518376829472