Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001589.1
Length=431
Score E
Sequences producing significant alignments: (Bits) Value
seq216645 242 9e-62
seq378107 212 2e-52
seq410735 183 8e-44
>seq216645
Length=1544
Score = 242 bits (268), Expect = 9e-62
Identities = 248/324 (77%), Gaps = 0/324 (0%)
Strand=Plus/Minus
Query 108 GCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGG 167
|||||||| || || | || || || |||| || ||||| |||| ||| ||||
Sbjct 1196 GCTGATGCCGCTCGGAGTTCGTATCTTTCTGGCCTACTTCCTGTTCGTCGGGCTGTCCGG 1137
Query 168 CTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGA 227
|| |||||||| | ||| |||||| | || |||||||| ||||||||||| ||||||||
Sbjct 1136 CTGGTTCGTGCTGAGCACGGTGATGGACGAGATCCGCCCGGGCGTGCGCCAGTCCACCGA 1077
Query 228 AGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAA 287
||||| |||| || ||||| |||||||||| | | |||||| || || |
Sbjct 1076 GGAAACCCTGGTCGATACCGCACACCTGCTGGCGGTGCTGTTGCGTGAGGAGGTGCGCGA 1017
Query 288 CGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAGCC 347
|||| ||||| |||| | || |||||||||||||||||| || ||| ||||||||
Sbjct 1016 CGGCCGCCTCGCCCAGGGGCAACTGCCCGAATTGCTCAAGGCCTACGGCCAGCGCCAGCC 957
Query 348 GGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGA 407
|| ||| |||||||||| || |||| || ||||||||||| ||||||||||| |||||
Sbjct 956 CGGCGCGCAGATCTGGGGCGTGGCGAAGAATCAGGTCAACCACCGCATCTACGTCACCGA 897
Query 408 CGCCAAGGGCAGGGTATTGCTCGA 431
|||||| |||| |||||||||||
Sbjct 896 CGCCAACGGCATCGTATTGCTCGA 873
Score = 75.2 bits (82), Expect = 3e-11
Identities = 65/81 (80%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60
||| ||||||||||||||||||||| |||||| | || ||| | | ||||||||
Sbjct 1328 CGACAGCCATATCAAGAGCCTGCGCGCCAAGCTGCGCCAGGTCGCGCCCCAGGCCGAGCC 1269
Query 61 GATCCAGACCCATCGCGGCCT 81
|||||||||||| ||||| ||
Sbjct 1268 GATCCAGACCCACCGCGGGCT 1248
>seq378107
Length=288
Score = 212 bits (234), Expect = 2e-52
Identities = 205/261 (79%), Gaps = 2/261 (1%)
Strand=Plus/Minus
Query 148 CTGTTTATCGGCCTGACCGGCTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCC 207
||||| |||| || |||||| |||||||| | ||| |||||| | || |||||||||
Sbjct 261 CTGTTCGTCGGGTTGTCCGGCTGGTTCGTGCTGAGCACGGTGATGGATGAGATCCGCCCC 202
Query 208 GGCGTGCGCCAATCCACCGAAGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATC 267
||||||||||| |||||||| || || |||| || ||||| ||||| |||| | |
Sbjct 201 GGCGTGCGCCAGTCCACCGAGGAGACCCTGGTCGATACCGCGCACCTGTTGGCGGTGCTG 142
Query 268 CTGCGTGCAGACGTTAAAAACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAG 327
||||| | |||||| | ||| |||||||||| | || | |||||| |||||||||
Sbjct 141 CTGCGCGAAGACGTGCGCGATGGCCGCCTCGGCCAGGGGCAGTTGCCCGAGTTGCTCAAG 82
Query 328 GCTTATGG-CAGTCGCCAGCCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAA 386
|| || || ||| |||||||| || ||| |||||||||| || |||| |||||||||||
Sbjct 81 GCCTACGGGCAG-CGCCAGCCCGGTGCGCAGATCTGGGGCGTGGCGAAGAACCAGGTCAA 23
Query 387 CCATCGCATCTACGTGACCGA 407
||| ||||||||||| |||||
Sbjct 22 CCACCGCATCTACGTCACCGA 2
>seq410735
Length=2348
Score = 183 bits (202), Expect = 8e-44
Identities = 212/283 (75%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 108 GCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGG 167
|||||||| || || | || || ||||||| || ||||| | || || ||||
Sbjct 1791 GCTGATGCCGCTCGGAGTCCGTATATTCCTGGCCTACTTCCTGTTCGTAGGACTCTCCGG 1850
Query 168 CTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGA 227
|| |||||||| | || |||||| | || || || |||||||||||||| ||||||||
Sbjct 1851 CTGGTTCGTGCTGAGTACGGTGATGGACGAGATTCGTCCCGGCGTGCGCCAGTCCACCGA 1910
Query 228 AGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAA 287
||||| |||| |||||||| |||||||||| | | ||||| | |||||| |
Sbjct 1911 GGAAACCCTGGTCGACACCGCGCACCTGCTGGCGGTGTTGCTGCGCGAAGACGTACGCGA 1970
Query 288 CGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGG-CAGTCGCCAGC 346
||| ||||| |||| | || ||||||||||||||| ||||| || ||| |||||||
Sbjct 1971 TGGCCGCCTCGCCCAGGGGCAACTGCCCGAATTGCTCAAAGCTTACGGTCAG-CGCCAGC 2029
Query 347 CGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCA 389
| || ||| |||||||||| || |||| || |||||||||||
Sbjct 2030 CCGGTGCGCAGATCTGGGGCGTGGCGAAGAATCAGGTCAACCA 2072
Score = 140 bits (154), Expect = 8e-31
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 108 GCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGG 167
|||||||| || || | || || ||||||| || ||||| | || ||| ||||
Sbjct 1553 GCTGATGCCGCTCGGAGTCCGTATATTCCTGGCCTACTTCCTGTTCGTAGGACTGTCCGG 1612
Query 168 CTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGA 227
|| |||||||| | || |||||| | || || || |||||||||||||| ||||||||
Sbjct 1613 CTGGTTCGTGCTGAGTACGGTGATGGACGAGATTCGTCCCGGCGTGCGCCAGTCCACCGA 1672
Query 228 AGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAA 287
||||| |||| || ||||| |||||||||| | | | ||||| | |||||| |
Sbjct 1673 GGAAACCCTGGTCGATACCGCGCACCTGCTGGCGGTATTGCTGCGCGAAGACGTACGCGA 1732
Query 288 CGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGC 329
||| ||||| |||| | || ||||||||||||||||||
Sbjct 1733 TGGCCGCCTCGCCCAGGGGCAACTGCCCGAATTGCTCAAGGC 1774
Score = 89.7 bits (98), Expect = 1e-15
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 340 CGCCAGCCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTAC 399
|||||||| || ||| |||||||||| || |||| || ||||||||||| || ||||||
Sbjct 2086 CGCCAGCCCGGTGCGCAGATCTGGGGCGTGGCGAAGAATCAGGTCAACCACCGTATCTAC 2145
Query 400 GTGACCGACGCCAAGGGCAGGGTATTGCTCGA 431
|| ||||||||||| || | || |||||||
Sbjct 2146 GTCACCGACGCCAACGGTATCGTGCTGCTCGA 2177
Score = 78.8 bits (86), Expect = 2e-12
Identities = 64/78 (82%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60
||| ||||||||||||||||||||| |||||| | || ||| | | ||||||||
Sbjct 1320 CGACAGCCATATCAAGAGCCTGCGCGCCAAGCTGCGTCAGGTCGCGCCCCAGGCCGAGCC 1379
Query 61 GATCCAGACCCATCGCGG 78
||||||||||||||||||
Sbjct 1380 GATCCAGACCCATCGCGG 1397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1270088794464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |