Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001589.1 Length=431 Score E Sequences producing significant alignments: (Bits) Value seq216645 242 9e-62 seq378107 212 2e-52 seq410735 183 8e-44 >seq216645 Length=1544 Score = 242 bits (268), Expect = 9e-62 Identities = 248/324 (77%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 108 GCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGG 167 |||||||| || || | || || || |||| || ||||| |||| ||| |||| Sbjct 1196 GCTGATGCCGCTCGGAGTTCGTATCTTTCTGGCCTACTTCCTGTTCGTCGGGCTGTCCGG 1137 Query 168 CTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGA 227 || |||||||| | ||| |||||| | || |||||||| ||||||||||| |||||||| Sbjct 1136 CTGGTTCGTGCTGAGCACGGTGATGGACGAGATCCGCCCGGGCGTGCGCCAGTCCACCGA 1077 Query 228 AGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAA 287 ||||| |||| || ||||| |||||||||| | | |||||| || || | Sbjct 1076 GGAAACCCTGGTCGATACCGCACACCTGCTGGCGGTGCTGTTGCGTGAGGAGGTGCGCGA 1017 Query 288 CGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAGCC 347 |||| ||||| |||| | || |||||||||||||||||| || ||| |||||||| Sbjct 1016 CGGCCGCCTCGCCCAGGGGCAACTGCCCGAATTGCTCAAGGCCTACGGCCAGCGCCAGCC 957 Query 348 GGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGA 407 || ||| |||||||||| || |||| || ||||||||||| ||||||||||| ||||| Sbjct 956 CGGCGCGCAGATCTGGGGCGTGGCGAAGAATCAGGTCAACCACCGCATCTACGTCACCGA 897 Query 408 CGCCAAGGGCAGGGTATTGCTCGA 431 |||||| |||| ||||||||||| Sbjct 896 CGCCAACGGCATCGTATTGCTCGA 873 Score = 75.2 bits (82), Expect = 3e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60 ||| ||||||||||||||||||||| |||||| | || ||| | | |||||||| Sbjct 1328 CGACAGCCATATCAAGAGCCTGCGCGCCAAGCTGCGCCAGGTCGCGCCCCAGGCCGAGCC 1269 Query 61 GATCCAGACCCATCGCGGCCT 81 |||||||||||| ||||| || Sbjct 1268 GATCCAGACCCACCGCGGGCT 1248 >seq378107 Length=288 Score = 212 bits (234), Expect = 2e-52 Identities = 205/261 (79%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 148 CTGTTTATCGGCCTGACCGGCTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCC 207 ||||| |||| || |||||| |||||||| | ||| |||||| | || ||||||||| Sbjct 261 CTGTTCGTCGGGTTGTCCGGCTGGTTCGTGCTGAGCACGGTGATGGATGAGATCCGCCCC 202 Query 208 GGCGTGCGCCAATCCACCGAAGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATC 267 ||||||||||| |||||||| || || |||| || ||||| ||||| |||| | | Sbjct 201 GGCGTGCGCCAGTCCACCGAGGAGACCCTGGTCGATACCGCGCACCTGTTGGCGGTGCTG 142 Query 268 CTGCGTGCAGACGTTAAAAACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAG 327 ||||| | |||||| | ||| |||||||||| | || | |||||| ||||||||| Sbjct 141 CTGCGCGAAGACGTGCGCGATGGCCGCCTCGGCCAGGGGCAGTTGCCCGAGTTGCTCAAG 82 Query 328 GCTTATGG-CAGTCGCCAGCCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAA 386 || || || ||| |||||||| || ||| |||||||||| || |||| ||||||||||| Sbjct 81 GCCTACGGGCAG-CGCCAGCCCGGTGCGCAGATCTGGGGCGTGGCGAAGAACCAGGTCAA 23 Query 387 CCATCGCATCTACGTGACCGA 407 ||| ||||||||||| ||||| Sbjct 22 CCACCGCATCTACGTCACCGA 2 >seq410735 Length=2348 Score = 183 bits (202), Expect = 8e-44 Identities = 212/283 (75%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 108 GCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGG 167 |||||||| || || | || || ||||||| || ||||| | || || |||| Sbjct 1791 GCTGATGCCGCTCGGAGTCCGTATATTCCTGGCCTACTTCCTGTTCGTAGGACTCTCCGG 1850 Query 168 CTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGA 227 || |||||||| | || |||||| | || || || |||||||||||||| |||||||| Sbjct 1851 CTGGTTCGTGCTGAGTACGGTGATGGACGAGATTCGTCCCGGCGTGCGCCAGTCCACCGA 1910 Query 228 AGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAA 287 ||||| |||| |||||||| |||||||||| | | ||||| | |||||| | Sbjct 1911 GGAAACCCTGGTCGACACCGCGCACCTGCTGGCGGTGTTGCTGCGCGAAGACGTACGCGA 1970 Query 288 CGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGG-CAGTCGCCAGC 346 ||| ||||| |||| | || ||||||||||||||| ||||| || ||| ||||||| Sbjct 1971 TGGCCGCCTCGCCCAGGGGCAACTGCCCGAATTGCTCAAAGCTTACGGTCAG-CGCCAGC 2029 Query 347 CGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCA 389 | || ||| |||||||||| || |||| || ||||||||||| Sbjct 2030 CCGGTGCGCAGATCTGGGGCGTGGCGAAGAATCAGGTCAACCA 2072 Score = 140 bits (154), Expect = 8e-31 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 108 GCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGG 167 |||||||| || || | || || ||||||| || ||||| | || ||| |||| Sbjct 1553 GCTGATGCCGCTCGGAGTCCGTATATTCCTGGCCTACTTCCTGTTCGTAGGACTGTCCGG 1612 Query 168 CTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGA 227 || |||||||| | || |||||| | || || || |||||||||||||| |||||||| Sbjct 1613 CTGGTTCGTGCTGAGTACGGTGATGGACGAGATTCGTCCCGGCGTGCGCCAGTCCACCGA 1672 Query 228 AGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAA 287 ||||| |||| || ||||| |||||||||| | | | ||||| | |||||| | Sbjct 1673 GGAAACCCTGGTCGATACCGCGCACCTGCTGGCGGTATTGCTGCGCGAAGACGTACGCGA 1732 Query 288 CGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGC 329 ||| ||||| |||| | || |||||||||||||||||| Sbjct 1733 TGGCCGCCTCGCCCAGGGGCAACTGCCCGAATTGCTCAAGGC 1774 Score = 89.7 bits (98), Expect = 1e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 340 CGCCAGCCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTAC 399 |||||||| || ||| |||||||||| || |||| || ||||||||||| || |||||| Sbjct 2086 CGCCAGCCCGGTGCGCAGATCTGGGGCGTGGCGAAGAATCAGGTCAACCACCGTATCTAC 2145 Query 400 GTGACCGACGCCAAGGGCAGGGTATTGCTCGA 431 || ||||||||||| || | || ||||||| Sbjct 2146 GTCACCGACGCCAACGGTATCGTGCTGCTCGA 2177 Score = 78.8 bits (86), Expect = 2e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60 ||| ||||||||||||||||||||| |||||| | || ||| | | |||||||| Sbjct 1320 CGACAGCCATATCAAGAGCCTGCGCGCCAAGCTGCGTCAGGTCGCGCCCCAGGCCGAGCC 1379 Query 61 GATCCAGACCCATCGCGG 78 |||||||||||||||||| Sbjct 1380 GATCCAGACCCATCGCGG 1397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1270088794464